| Year |
Citation |
Score |
| 2024 |
Liu J, Yashiro Y, Sakaguchi Y, Suzuki T, Tomita K. Substrate specificity of Mycobacterium tuberculosis tRNA terminal nucleotidyltransferase toxin MenT3. Nucleic Acids Research. PMID 38485701 DOI: 10.1093/nar/gkae177 |
0.355 |
|
| 2023 |
Yamashita S, Tomita K. Mechanism of U6 snRNA oligouridylation by human TUT1. Nature Communications. 14: 4686. PMID 37563152 DOI: 10.1038/s41467-023-40420-9 |
0.796 |
|
| 2023 |
Nagato Y, Yamashita S, Ohashi A, Furukawa H, Takai K, Tomita K, Tomikawa C. Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria. Journal of Biochemistry. PMID 37261968 DOI: 10.1093/jb/mvad043 |
0.765 |
|
| 2023 |
Ju J, Aoyama T, Yashiro Y, Yamashita S, Kuroyanagi H, Tomita K. Structure of the Caenorhabditis elegans m6A methyltransferase METT10 that regulates SAM homeostasis. Nucleic Acids Research. 51: 2434-2446. PMID 36794723 DOI: 10.1093/nar/gkad081 |
0.815 |
|
| 2022 |
Ohira T, Minowa K, Sugiyama K, Yamashita S, Sakaguchi Y, Miyauchi K, Noguchi R, Kaneko A, Orita I, Fukui T, Tomita K, Suzuki T. Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance. Nature. PMID 35477761 DOI: 10.1038/s41586-022-04677-2 |
0.8 |
|
| 2022 |
Wang J, Yashiro Y, Sakaguchi Y, Suzuki T, Tomita K. Mechanistic insights into tRNA cleavage by a contact-dependent growth inhibitor protein and translation factors. Nucleic Acids Research. PMID 35411396 DOI: 10.1093/nar/gkac228 |
0.821 |
|
| 2021 |
Yashiro Y, Zhang C, Sakaguchi Y, Suzuki T, Tomita K. Molecular basis of glycyl-tRNA acetylation by TacT from Salmonella Typhimurium. Cell Reports. 37: 110130. PMID 34936863 DOI: 10.1016/j.celrep.2021.110130 |
0.801 |
|
| 2020 |
Yashiro Y, Sakaguchi Y, Suzuki T, Tomita K. Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli. Nature Communications. 11: 5438. PMID 33116145 DOI: 10.1038/s41467-020-19281-z |
0.803 |
|
| 2020 |
Kurimoto R, Chiba T, Ito Y, Matsushima T, Yano Y, Miyata K, Yashiro Y, Suzuki T, Tomita K, Asahara H. The tRNA pseudouridine synthase TruB1 regulates the maturation of let-7 miRNA. The Embo Journal. e104708. PMID 32926445 DOI: 10.15252/Embj.2020104708 |
0.791 |
|
| 2020 |
Zhang C, Yashiro Y, Sakaguchi Y, Suzuki T, Tomita K. Substrate specificities of Escherichia coli ItaT that acetylates aminoacyl-tRNAs. Nucleic Acids Research. PMID 32501503 DOI: 10.1093/Nar/Gkaa487 |
0.798 |
|
| 2020 |
Aoyama T, Yamashita S, Tomita K. Mechanistic insights into m6A modification of U6 snRNA by human METTL16. Nucleic Acids Research. 48: 5157-5168. PMID 32266935 DOI: 10.1093/Nar/Gkaa227 |
0.823 |
|
| 2020 |
Abe T, Nagai R, Shimazaki S, Kondo S, Nishimura S, Sakaguchi Y, Suzuki T, Imataka H, Tomita K, Takeuchi-Tomita N. in vitro yeast reconstituted translation system reveals function of eIF5A for synthesis of long polypeptide. Journal of Biochemistry. PMID 32053170 DOI: 10.1093/Jb/Mvaa022 |
0.396 |
|
| 2020 |
Liu Y, Martinez A, Yamashita S, Tomita K. Crystal structure of human cytoplasmic tRNAHis-specific 5'-monomethylphosphate capping enzyme. Nucleic Acids Research. PMID 31919512 DOI: 10.2210/Pdb6L8U/Pdb |
0.825 |
|
| 2019 |
Yamashita S, Nagaike T, Tomita K. Crystal structure of the Lin28-interacting module of human terminal uridylyltransferase that regulates let-7 expression. Nature Communications. 10: 1960. PMID 31036859 DOI: 10.1038/S41467-019-09966-5 |
0.802 |
|
| 2019 |
Yashiro Y, Yamashita S, Tomita K. Crystal Structure of the Enterohemorrhagic Escherichia coli AtaT-AtaR Toxin-Antitoxin Complex. Structure (London, England : 1993). 27: 476-484.e3. PMID 30612860 DOI: 10.2210/Pdb6Ajn/Pdb |
0.785 |
|
| 2018 |
Yashiro Y, Tomita K. Function and Regulation of Human Terminal Uridylyltransferases. Frontiers in Genetics. 9: 538. PMID 30483311 DOI: 10.3389/Fgene.2018.00538 |
0.835 |
|
| 2018 |
Taniguchi T, Miyauchi K, Sakaguchi Y, Yamashita S, Soma A, Tomita K, Suzuki T. Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis. Nature Chemical Biology. PMID 30150682 DOI: 10.1038/S41589-018-0119-Z |
0.783 |
|
| 2018 |
Tomita K, Liu Y. Human BCDIN3D Is a Cytoplasmic tRNA-Specific 5'-Monophosphate Methyltransferase. Frontiers in Genetics. 9: 305. PMID 30127802 DOI: 10.3389/Fgene.2018.00305 |
0.436 |
|
| 2017 |
Yamashita S, Takagi Y, Nagaike T, Tomita K. Crystal structures of U6 snRNA-specific terminal uridylyltransferase. Nature Communications. 8: 15788. PMID 28589955 DOI: 10.1038/Ncomms15788 |
0.806 |
|
| 2017 |
Kawasaki S, Fujita Y, Nagaike T, Tomita K, Saito H. Synthetic mRNA devices that detect endogenous proteins and distinguish mammalian cells. Nucleic Acids Research. PMID 28525643 DOI: 10.1093/Nar/Gkx298 |
0.763 |
|
| 2017 |
Martinez A, Yamashita S, Nagaike T, Sakaguchi Y, Suzuki T, Tomita K. Human BCDIN3D monomethylates cytoplasmic histidine transfer RNA. Nucleic Acids Research. PMID 28119416 DOI: 10.1093/Nar/Gkx051 |
0.799 |
|
| 2017 |
Tomita K. A possible link between specific transfer RNA methylation and tumorigenic phenotype of breast cancer Rna & Disease. 4. DOI: 10.14800/Rd.1530 |
0.313 |
|
| 2016 |
Mannen T, Yamashita S, Tomita K, Goshima N, Hirose T. The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL. The Journal of Cell Biology. 214: 45-59. PMID 27377249 DOI: 10.1083/Jcb.201601024 |
0.8 |
|
| 2016 |
Yamashita S, Tomita K. Mechanism of 3'-Matured tRNA Discrimination from 3'-Immature tRNA by Class-II CCA-Adding Enzyme. Structure (London, England : 1993). 24: 918-25. PMID 27133023 DOI: 10.1016/J.Str.2016.03.022 |
0.811 |
|
| 2015 |
Yamashita S, Martinez A, Tomita K. Measurement of Acceptor-TΨC Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure (London, England : 1993). 23: 830-42. PMID 25914059 DOI: 10.1016/J.Str.2015.03.013 |
0.803 |
|
| 2014 |
Tomita K. Structures and functions of Qβ replicase: translation factors beyond protein synthesis. International Journal of Molecular Sciences. 15: 15552-70. PMID 25184952 DOI: 10.3390/Ijms150915552 |
0.506 |
|
| 2014 |
Takeshita D, Yamashita S, Tomita K. Molecular insights into replication initiation by Qβ replicase using ribosomal protein S1. Nucleic Acids Research. 42: 10809-22. PMID 25122749 DOI: 10.1093/Nar/Gku745 |
0.822 |
|
| 2014 |
Tomita K, Takeshita D. [Mechanism of RNA polymerization by Qbeta replicase]. Seikagaku. the Journal of Japanese Biochemical Society. 86: 391-4. PMID 25073378 |
0.78 |
|
| 2014 |
Tomita K, Yamashita S. Molecular mechanisms of template-independent RNA polymerization by tRNA nucleotidyltransferases. Frontiers in Genetics. 5: 36. PMID 24596576 DOI: 10.3389/Fgene.2014.00036 |
0.827 |
|
| 2014 |
Yamashita S, Takeshita D, Tomita K. Translocation and rotation of tRNA during template-independent RNA polymerization by tRNA nucleotidyltransferase. Structure (London, England : 1993). 22: 315-25. PMID 24389024 DOI: 10.1016/J.Str.2013.12.002 |
0.806 |
|
| 2012 |
Takeshita D, Yamashita S, Tomita K. Mechanism for template-independent terminal adenylation activity of Qβ replicase. Structure (London, England : 1993). 20: 1661-9. PMID 22884418 DOI: 10.1016/J.Str.2012.07.004 |
0.823 |
|
| 2012 |
Tomita K. [Mechanism of template-independent RNA polymerization]. Seikagaku. the Journal of Japanese Biochemical Society. 84: 355-9. PMID 22746058 |
0.356 |
|
| 2012 |
Takeshita D, Tomita K. Molecular basis for RNA polymerization by Qβ replicase. Nature Structural & Molecular Biology. 19: 229-37. PMID 22245970 DOI: 10.1038/Nsmb.2204 |
0.808 |
|
| 2012 |
Takeshita D, Tomita K. 3C1022 Non-canonical functions of translational factors as RNA replication cofactors(Nucleic Acids,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52. DOI: 10.2142/Biophys.52.S61_1 |
0.4 |
|
| 2011 |
Toh Y, Takeshita D, Nagaike T, Numata T, Tomita K. Mechanism for the alteration of the substrate specificities of template-independent RNA polymerases. Structure (London, England : 1993). 19: 232-43. PMID 21300291 DOI: 10.1016/J.Str.2010.12.006 |
0.812 |
|
| 2010 |
Takeshita D, Tomita K. Assembly of Q{beta} viral RNA polymerase with host translational elongation factors EF-Tu and -Ts. Proceedings of the National Academy of Sciences of the United States of America. 107: 15733-8. PMID 20798060 DOI: 10.1073/Pnas.1006559107 |
0.807 |
|
| 2009 |
Toh Y, Takeshita D, Numata T, Fukai S, Nureki O, Tomita K. Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme. The Embo Journal. 28: 3353-65. PMID 19745807 DOI: 10.1038/Emboj.2009.260 |
0.785 |
|
| 2009 |
Watanabe K, Toh Y, Tomita K. [Molecular basis for peptide-bond formation by an aminoacyl-tRNA protein transferase]. Seikagaku. the Journal of Japanese Biochemical Society. 81: 294-8. PMID 19462836 |
0.761 |
|
| 2009 |
Osawa T, Ito K, Inanaga H, Nureki O, Tomita K, Numata T. Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon. Structure (London, England : 1993). 17: 713-24. PMID 19446527 DOI: 10.1016/J.Str.2009.03.013 |
0.458 |
|
| 2008 |
Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O, Tomita K. Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme. The Embo Journal. 27: 1944-52. PMID 18583961 DOI: 10.1038/Emboj.2008.124 |
0.783 |
|
| 2007 |
Tomita K, Numata T, Fukai T, Nureki S, Ishitani R, Nureki O. Animated crystallography of genetic code translation. Nucleic Acids Symposium Series (2004). 101-2. PMID 18029606 DOI: 10.1093/nass/nrm051 |
0.412 |
|
| 2007 |
Watanabe K, Toh Y, Suto K, Shimizu Y, Oka N, Wada T, Tomita K. Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase. Nature. 449: 867-71. PMID 17891155 DOI: 10.1038/Nature06167 |
0.775 |
|
| 2006 |
Suto K, Shimizu Y, Watanabe K, Ueda T, Fukai S, Nureki O, Tomita K. Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog. The Embo Journal. 25: 5942-50. PMID 17110926 DOI: 10.1038/Sj.Emboj.7601433 |
0.411 |
|
| 2006 |
Tomita K, Ishitani R, Fukai S, Nureki O. Complete crystallographic analysis of the dynamics of CCA sequence addition. Nature. 443: 956-60. PMID 17051158 DOI: 10.1038/Nature05204 |
0.553 |
|
| 2004 |
Tomita K, Fukai S, Ishitani R, Ueda T, Takeuchi N, Vassylyev DG, Nureki O. Structural basis for template-independent RNA polymerization. Nature. 430: 700-4. PMID 15295603 DOI: 10.1038/Nature02712 |
0.571 |
|
| 2003 |
Okabe M, Tomita K, Ishitani R, Ishii R, Takeuchi N, Arisaka F, Nureki O, Yokoyama S. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. The Embo Journal. 22: 5918-27. PMID 14592988 DOI: 10.1093/Emboj/Cdg563 |
0.433 |
|
| 2002 |
Li F, Xiong Y, Wang J, Cho HD, Tomita K, Weiner AM, Steitz TA. Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP. Cell. 111: 815-24. PMID 12526808 DOI: 10.1016/S0092-8674(02)01115-7 |
0.623 |
|
| 2002 |
Tomita K, Weiner AM. Closely related CC- and A-adding enzymes collaborate to construct and repair the 3'-terminal CCA of tRNA in Synechocystis sp. and Deinococcus radiodurans. The Journal of Biological Chemistry. 277: 48192-8. PMID 12370185 DOI: 10.1074/Jbc.M207527200 |
0.578 |
|
| 2002 |
Tomita K, Yokobori S, Oshima T, Ueda T, Watanabe K. The cephalopod Loligo bleekeri mitochondrial genome: multiplied noncoding regions and transposition of tRNA genes. Journal of Molecular Evolution. 54: 486-500. PMID 11956687 DOI: 10.1007/S00239-001-0039-4 |
0.544 |
|
| 2002 |
Fey J, Weil JH, Tomita K, Cosset A, Dietrich A, Small I, Marechal-Drouard L. Role of editing in plant mitochondrial transfer RNAs Gene. 286: 21-24. PMID 11943456 DOI: 10.1016/S0378-1119(01)00817-4 |
0.427 |
|
| 2002 |
Cho HD, Tomita K, Suzuki T, Weiner AM. U2 small nuclear RNA is a substrate for the CCA-adding enzyme (tRNA nucleotidyltransferase). The Journal of Biological Chemistry. 277: 3447-55. PMID 11700323 DOI: 10.1074/Jbc.M109559200 |
0.657 |
|
| 2001 |
Tomita K, Weiner AM. Collaboration between CC- and A-adding enzymes to build and repair the 3'-terminal CCA of tRNA in Aquifex aeolicus. Science (New York, N.Y.). 294: 1334-6. PMID 11701927 DOI: 10.1126/Science.1063816 |
0.655 |
|
| 2001 |
Fey J, Weil JH, Tomita K, Cosset A, Dietrich A, Small I, Maréchal-Drouard L. Editing of plant mitochondrial transfer RNAs. Acta Biochimica Polonica. 48: 383-389. DOI: 10.18388/Abp.2001_3923 |
0.429 |
|
| 2000 |
Tomita K, Ogawa T, Uozumi T, Watanabe K, Masaki H. A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops Proceedings of the National Academy of Sciences of the United States of America. 97: 8278-8283. PMID 10880568 DOI: 10.1073/Pnas.140213797 |
0.661 |
|
| 2000 |
Fey J, Tomita K, Bergdoll M, Maréchal-Drouard L. Evolutionary and functional aspects of C-to-U editing at position 28 of tRNA(Cys)(GCA) in plant mitochondria. Rna. 6: 470-474. PMID 10786838 DOI: 10.1017/S1355838200992380 |
0.388 |
|
| 1999 |
Tomita K, Ueda T, Ishiwa S, Crain PF, McCloskey JA, Watanabe K. Codon reading patterns in Drosophila melanogaster mitochondria based on their tRNA sequences: a unique wobble rule in animal mitochondria. Nucleic Acids Research. 27: 4291-7. PMID 10518623 DOI: 10.1093/Nar/27.21.4291 |
0.391 |
|
| 1999 |
Ogawa T, Tomita K, Ueda T, Watanabe K, Uozumi T, Masaki H. A Cytotoxic Ribonuclease Targeting Specific Transfer RNA Anticodons Science. 283: 2097-2100. PMID 10092236 DOI: 10.1126/Science.283.5410.2097 |
0.449 |
|
| 1999 |
Tomita K, Ueda T, Watanabe K. The presence of pseudouridine in the anticodon alters the genetic code: A possible mechanism for assignment of the AAA lysine codon as asparagine in echinoderm mitochondria Nucleic Acids Research. 27: 1683-1689. PMID 10076000 DOI: 10.1093/Nar/27.7.1683 |
0.395 |
|
| 1998 |
Tomita K, Ueda T, Watanabe K. 7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNASerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria Biochimica Et Biophysica Acta. 1399: 78-82. PMID 9714749 DOI: 10.1016/S0167-4781(98)00099-2 |
0.602 |
|
| 1996 |
Tomita K, Ueda T, Watanabe K. Two nucleotides 5′-adjacent to the anticodon of rat cytoplasmic tRNAAsp are not edited Biochimie. 78: 1001-1006. PMID 9150878 DOI: 10.1016/S0300-9084(97)86723-5 |
0.619 |
|
| 1996 |
Tomita K, Ueda T, Watanabe K. RNA Editing in the Acceptor Stem of Squid Mitochondrial tRNATyr Nucleic Acids Research. 24: 4987-4991. PMID 9016670 DOI: 10.1093/Nar/24.24.4987 |
0.632 |
|
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