128 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Khan N, Muge E, Mulaa FJ, Wamalwa B, von Bergen M, Jehmlich N, Wick LY. Mycelial nutrient transfer promotes bacterial co-metabolic organochlorine pesticide degradation in nutrient-deprived environments. The Isme Journal. PMID 36707614 DOI: 10.1038/s41396-023-01371-7  0.341
2022 Geesink P, Taubert M, Jehmlich N, von Bergen M, Küsel K. Bacterial Necromass Is Rapidly Metabolized by Heterotrophic Bacteria and Supports Multiple Trophic Levels of the Groundwater Microbiome. Microbiology Spectrum. e0043722. PMID 35699474 DOI: 10.1128/spectrum.00437-22  0.321
2021 Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, et al. The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiome. 9: 243. PMID 34930457 DOI: 10.1186/s40168-021-01176-w  0.572
2021 Fernandes MLP, Bastida F, Jehmlich N, Martinović T, Větrovský T, Baldrian P, Delgado-Baquerizo M, Starke R. Functional soil mycobiome across ecosystems. Journal of Proteomics. 252: 104428. PMID 34818587 DOI: 10.1016/j.jprot.2021.104428  0.628
2021 Starke R, Fernandes MLP, Morais DK, Odriozola I, Baldrian P, Jehmlich N. Explorative Meta-Analysis of 417 Extant Archaeal Genomes to Predict Their Contribution to the Total Microbiome Functionality. Microorganisms. 9. PMID 33668634 DOI: 10.3390/microorganisms9020381  0.59
2021 Starke R, Siles JA, Fernandes MLP, Schallert K, Benndorf D, Plaza C, Jehmlich N, Delgado-Baquerizo M, Bastida F. The structure and function of soil archaea across biomes. Journal of Proteomics. 237: 104147. PMID 33582288 DOI: 10.1016/j.jprot.2021.104147  0.452
2021 Starke R, Schäpe SS, Jehmlich N, von Bergen M. Protein stable isotope probing with H O differentiated cold stress response at permissive temperatures from general growth at optimal conditions in Escherichia coli K12. Rapid Communications in Mass Spectrometry : Rcm. 35: e8941. PMID 32885498 DOI: 10.1002/Rcm.8941  0.524
2020 Lohmann P, Benk S, Gleixner G, Potthast K, Michalzik B, Jehmlich N, Bergen MV. Seasonal Patterns of Dominant Microbes Involved in Central Nutrient Cycles in the Subsurface. Microorganisms. 8. PMID 33143231 DOI: 10.3390/microorganisms8111694  0.71
2020 Schäpe SS, Krause JL, Masanetz RK, Riesbeck S, Starke R, Rolle-Kampczyk U, Eberlein C, Heipieper HJ, Herberth G, von Bergen M, Jehmlich N. Environmentally Relevant Concentration of Bisphenol S Shows Slight Effects on SIHUMIx. Microorganisms. 8. PMID 32961728 DOI: 10.3390/microorganisms8091436  0.408
2020 Krause JL, Haange SB, Schäpe SS, Engelmann B, Rolle-Kampczyk U, Fritz-Wallace K, Wang Z, Jehmlich N, Türkowsky D, Schubert K, Pöppe J, Bote K, Rösler U, Herberth G, von Bergen M. The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro. The Science of the Total Environment. 745: 140932. PMID 32731069 DOI: 10.1016/J.Scitotenv.2020.140932  0.378
2020 Ananbeh H, Merlos Rodrigo MA, Jelinkova P, Strmiska V, Splichal Z, Jehmlich N, Michalkova H, Stojanović M, Voberkova S, Adam V, Moulick A. Soil protein as a potential antimicrobial agent against methicillin -resistant Staphylococcus aureus. Environmental Research. 188: 109320. PMID 32540568 DOI: 10.1016/J.Envres.2020.109320  0.35
2020 Starke R, Oliphant K, Jehmlich N, Schäpe SS, Sachsenberg T, Kohlbacher O, Allen-Vercoe E, von Bergen M. Corrigendum to Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities. Journal of Proteomics. 224: 103829. PMID 32467047 DOI: 10.1016/J.Jprot.2020.103829  0.526
2020 Meyer-Cifuentes I, Gruhl S, Haange SB, Lünsmann V, Jehmlich N, Bergen MV, Heipieper HJ, Müller JA. Benzylsuccinate Synthase is Post-Transcriptionally Regulated in the Toluene-Degrading Denitrifier sp. Strain 15-1. Microorganisms. 8. PMID 32392861 DOI: 10.3390/microorganisms8050681  0.708
2020 Krause JL, Schäpe SS, Schattenberg F, Müller S, Ackermann G, Rolle-Kampczyk UE, Jehmlich N, Pierzchalski A, von Bergen M, Herberth G. The Activation of Mucosal-Associated Invariant T (MAIT) Cells Is Affected by Microbial Diversity and Riboflavin Utilization . Frontiers in Microbiology. 11: 755. PMID 32390989 DOI: 10.3389/Fmicb.2020.00755  0.363
2020 Rohwerder T, Rohde MT, Jehmlich N, Purswani J. Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction. Frontiers in Microbiology. 11: 691. PMID 32351493 DOI: 10.3389/Fmicb.2020.00691  0.339
2020 Starke R, Oliphant K, Jehmlich N, Schäpe SS, Sachsenberg T, Kohlbacher O, Allen-Vercoe E, von Bergen M. Tracing incorporation of heavy water into proteins for species-specific metabolic activity in complex communities. Journal of Proteomics. 222: 103791. PMID 32335296 DOI: 10.1016/J.Jprot.2020.103791  0.583
2020 Lohmann P, Schäpe SS, Haange SB, Oliphant K, Allen-Vercoe E, Jehmlich N, Von Bergen M. Function is what counts: how microbial community complexity affects species, proteome and pathway coverage in metaproteomics. Expert Review of Proteomics. 17: 163-173. PMID 32174200 DOI: 10.1080/14789450.2020.1738931  0.364
2020 Kipping L, Holzscheck N, Maurer F, Muszynski S, Noll M, Jehmlich N. Microbial metaproteome data from decayed beech dead wood. Data in Brief. 29: 105285. PMID 32123712 DOI: 10.1016/J.Dib.2020.105285  0.414
2020 Starke R, Capek P, Morais D, Jehmlich N, Baldrian P. Explorative Meta-Analysis of 377 Extant Fungal Genomes Predicted a Total Mycobiome Functionality of 42.4 Million KEGG Functions. Frontiers in Microbiology. 11: 143. PMID 32117162 DOI: 10.3389/Fmicb.2020.00143  0.625
2020 Farag MA, Abdelwareth A, Sallam IE, El Shorbagi M, Jehmlich N, Fritz-Wallace K, Serena Schäpe S, Rolle-Kampczyk U, Ehrlich A, Wessjohann LA, von Bergen M. Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model. Journal of Advanced Research. 23: 47-59. PMID 32071791 DOI: 10.1016/J.Jare.2020.01.001  0.329
2020 Krause JL, Schaepe SS, Fritz-Wallace K, Engelmann B, Rolle-Kampczyk U, Kleinsteuber S, Schattenberg F, Liu Z, Mueller S, Jehmlich N, Von Bergen M, Herberth G. Following the community development of SIHUMIx - a new intestinal model for bioreactor use. Gut Microbes. 1-14. PMID 31918607 DOI: 10.1080/19490976.2019.1702431  0.634
2020 Mendler A, Geier F, Haange SB, Pierzchalski A, Krause JL, Nijenhuis I, Froment J, Jehmlich N, Berger U, Ackermann G, Rolle-Kampczyk U, von Bergen M, Herberth G. Mucosal-associated invariant T-Cell (MAIT) activation is altered by chlorpyrifos- and glyphosate-treated commensal gut bacteria. Journal of Immunotoxicology. 17: 10-20. PMID 31909636 DOI: 10.1080/1547691X.2019.1706672  0.33
2019 Starke R, Capek P, Morais D, Callister SJ, Jehmlich N. The total microbiome functions in bacteria and fungi. Journal of Proteomics. 213: 103623. PMID 31863929 DOI: 10.1016/J.Jprot.2019.103623  0.712
2019 Petruschke H, Anders J, Stadler PF, Jehmlich N, von Bergen M. Enrichment and identification of small proteins in a simplified human gut microbiome. Journal of Proteomics. 103604. PMID 31841667 DOI: 10.1016/J.Jprot.2019.103604  0.444
2019 Buettner C, von Bergen M, Jehmlich N, Noll M. Pseudomonas spp. are key players in agricultural biogas substrate degradation. Scientific Reports. 9: 12871. PMID 31492882 DOI: 10.1038/S41598-019-49313-8  0.357
2019 Anselmann SEL, Löffler C, Stärk HJ, Jehmlich N, von Bergen M, Brüls T, Boll M. The class II benzoyl-coenzyme A reductase complex from the sulfate-reducing Desulfosarcina cetonica. Environmental Microbiology. 21: 4241-4252. PMID 31430028 DOI: 10.1111/1462-2920.14784  0.301
2019 Bastida F, García C, Fierer N, Eldridge DJ, Bowker MA, Abades S, Alfaro FD, Asefaw Berhe A, Cutler NA, Gallardo A, García-Velázquez L, Hart SC, Hayes PE, Hernández T, Hseu ZY, ... Jehmlich N, et al. Global ecological predictors of the soil priming effect. Nature Communications. 10: 3481. PMID 31375717 DOI: 10.1038/S41467-019-11472-7  0.329
2019 Taubert M, Grob C, Crombie A, Howat AM, Burns OJ, Weber M, Lott C, Kaster AK, Vollmers J, Jehmlich N, von Bergen M, Chen Y, Murrell JC. Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy. Environmental Microbiology. PMID 31267680 DOI: 10.1111/1462-2920.14728  0.334
2019 Geiger RA, Junghare M, Mergelsberg M, Ebenau-Jehle C, Jesenofsky VJ, Jehmlich N, von Bergen M, Schink B, Boll M. Enzymes involved in phthalate degradation in sulphate-reducing bacteria. Environmental Microbiology. PMID 31087742 DOI: 10.1111/1462-2920.14681  0.377
2019 Starke R, Jehmlich N, Alfaro T, Dohnalkova A, Capek P, Bell SL, Hofmockel KS. Incomplete cell disruption of resistant microbes. Scientific Reports. 9: 5618. PMID 30948770 DOI: 10.1038/S41598-019-42188-9  0.665
2019 Reina R, Kellner H, Hess J, Jehmlich N, García-Romera I, Aranda E, Hofrichter M, Liers C. Genome and secretome of Chondrostereum purpureum correspond to saprotrophic and phytopathogenic life styles. Plos One. 14: e0212769. PMID 30822315 DOI: 10.1371/Journal.Pone.0212769  0.318
2019 Haange SB, Jehmlich N, Hoffmann M, Weber K, Lehmann J, von Bergen M, Slanina U. Disease Development Is Accompanied by Changes in Bacterial Protein Abundance and Functions in a Refined Model of Dextran Sulfate Sodium (DSS)-Induced Colitis. Journal of Proteome Research. 18: 1774-1786. PMID 30767541 DOI: 10.1021/Acs.Jproteome.8B00974  0.354
2019 Bastida F, López-Mondéjar R, Baldrian P, Andrés-Abellán M, Jehmlich N, Torres IF, García C, López-Serrano FR. When drought meets forest management: Effects on the soil microbial community of a Holm oak forest ecosystem. The Science of the Total Environment. 662: 276-286. PMID 30690362 DOI: 10.1016/J.Scitotenv.2019.01.233  0.575
2019 Starke R, Jehmlich N, Bastida F. Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics. Journal of Proteomics. 198: 50-58. PMID 30445181 DOI: 10.1016/J.Jprot.2018.11.011  0.487
2019 Bastida F, Jehmlich N, Martínez-Navarro J, Bayona V, García C, Moreno JL. The effects of struvite and sewage sludge on plant yield and the microbial community of a semiarid Mediterranean soil Geoderma. 337: 1051-1057. DOI: 10.1016/J.Geoderma.2018.10.046  0.313
2018 Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, ... Jehmlich N, et al. Expanding the use of spectral libraries in proteomics. Journal of Proteome Research. PMID 30270626 DOI: 10.1021/Acs.Jproteome.8B00485  0.307
2018 Herbst FA, Jehmlich N, von Bergen M, Schmidt F. Sulfur-S and S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses. Methods in Molecular Biology (Clifton, N.J.). 1841: 163-174. PMID 30259486 DOI: 10.1007/978-1-4939-8695-8_12  0.329
2018 Malik AA, Puissant J, Buckeridge KM, Goodall T, Jehmlich N, Chowdhury S, Gweon HS, Peyton JM, Mason KE, van Agtmaal M, Blaud A, Clark IM, Whitaker J, Pywell RF, Ostle N, et al. Land use driven change in soil pH affects microbial carbon cycling processes. Nature Communications. 9: 3591. PMID 30181597 DOI: 10.1038/S41467-018-05980-1  0.304
2018 Lechner U, Türkowsky D, Dinh TTH, Al-Fathi H, Schwoch S, Franke S, Gerlach MS, Koch M, von Bergen M, Jehmlich N, Dang TCH. Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill. Microbial Biotechnology. PMID 30117290 DOI: 10.1111/1751-7915.13301  0.357
2018 Türkowsky D, Lohmann P, Mühlenbrink M, Schubert T, Adrian L, Goris T, Jehmlich N, von Bergen M. Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene. Journal of Proteomics. PMID 29879467 DOI: 10.1016/J.Jprot.2018.05.018  0.38
2018 Bastida F, Crowther TW, Prieto I, Routh D, García C, Jehmlich N. Climate shapes the protein abundance of dominant soil bacteria. The Science of the Total Environment. 640: 18-21. PMID 29852443 DOI: 10.1016/J.Scitotenv.2018.05.288  0.348
2018 Cerdó T, Ruiz A, Acuña I, Jáuregui R, Jehmlich N, Haange SB, von Bergen M, Suárez A, Campoy C. Gut microbial functional maturation and succession during human early life. Environmental Microbiology. 20: 2160-2177. PMID 29687552 DOI: 10.1111/1462-2920.14235  0.415
2018 Türkowsky D, Esken J, Goris T, Schubert T, Diekert G, Jehmlich N, von Bergen M. A Retentive Memory of Tetrachloroethene Respiration in Sulfurospirillum halorespirans - involved Proteins and a possible link to Acetylation of a Two-Component Regulatory System. Journal of Proteomics. PMID 29617628 DOI: 10.1016/J.Jprot.2018.03.030  0.332
2018 Wintsche B, Jehmlich N, Popp D, Harms H, Kleinsteuber S. Metabolic Adaptation of Methanogens in Anaerobic Digesters Upon Trace Element Limitation. Frontiers in Microbiology. 9: 405. PMID 29593674 DOI: 10.3389/Fmicb.2018.00405  0.645
2018 Türkowsky D, Jehmlich N, Diekert G, Adrian L, von Bergen M, Goris T. An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research. Fems Microbiology Ecology. PMID 29390082 DOI: 10.1093/Femsec/Fiy013  0.367
2018 Taubert M, Stöckel S, Geesink P, Girnus S, Jehmlich N, von Bergen M, Rösch P, Popp J, Küsel K. Tracking active groundwater microbes with D O labelling to understand their ecosystem function. Environmental Microbiology. 20: 369-384. PMID 29194923 DOI: 10.1111/1462-2920.14010  0.38
2018 Chupani L, Niksirat H, Lünsmann V, Haange SB, von Bergen M, Jehmlich N, Zuskova E. Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles. The Science of the Total Environment. 613: 62-71. PMID 28898813 DOI: 10.1016/J.Scitotenv.2017.08.129  0.326
2018 Ros M, Blaya J, Baldrian P, Bastida F, Richnow HH, Jehmlich N, Pascual JA. In vitro elucidation of suppression effects of composts to soil-borne pathogen Phytophthora nicotianae on pepper plants using 16S amplicon sequencing and metaproteomics Renewable Agriculture and Food Systems. 35: 206-214. DOI: 10.1017/S1742170518000467  0.578
2017 Bastida F, Jehmlich N, Torres IF, García C. The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers. The Science of the Total Environment. 619: 707-711. PMID 29156289 DOI: 10.1016/J.Scitotenv.2017.11.134  0.323
2017 Pinaud L, Ferrari ML, Friedman R, Jehmlich N, von Bergen M, Phalipon A, Sansonetti PJ, Campbell-Valois FX. Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome. Plos One. 12: e0186920. PMID 29073283 DOI: 10.1371/Journal.Pone.0186920  0.381
2017 Warnke M, Jacoby C, Jung T, Agne M, Mergelsberg M, Starke R, Jehmlich N, von Bergen M, Richnow HH, Brüls T, Boll M. A patchwork pathway for oxygenase-independent degradation of side chain containing steroids. Environmental Microbiology. PMID 28940833 DOI: 10.1111/1462-2920.13933  0.499
2017 Starke R, Bastida F, Abadía J, García C, Nicolás E, Jehmlich N. Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach. Scientific Reports. 7: 10221. PMID 28860535 DOI: 10.1038/S41598-017-09973-W  0.493
2017 Bastida F, Torres IF, Andrés-Abellán M, Baldrian P, López-Mondéjar R, Větrovský T, Richnow HH, Starke R, Ondoño S, García C, López-Serrano FR, Jehmlich N. Differential sensitivity of total and active soil microbial communities to drought and forest management. Global Change Biology. PMID 28614633 DOI: 10.1111/Gcb.13790  0.649
2017 Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M. Metabolic in vivo labelling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high fat and normal chow diet. Journal of Proteome Research. PMID 28252966 DOI: 10.1021/Acs.Jproteome.6B00973  0.601
2017 Taubert M, Grob C, Howat AM, Burns OJ, Pratscher J, Jehmlich N, von Bergen M, Richnow HH, Chen Y, Colin Murrell J. Methylamine as a Nitrogen Source for Microorganisms from a Coastal Marine Environment. Environmental Microbiology. PMID 28244196 DOI: 10.1111/1462-2920.13709  0.349
2017 Kiebist J, Schmidtke KU, Zimmermann J, Kellner H, Jehmlich N, Ullrich R, Zänder D, Hofrichter M, Scheibner K. A peroxygenase from Chaetomium globosum catalyzes the selective oxygenation of testosterone. Chembiochem : a European Journal of Chemical Biology. PMID 28103392 DOI: 10.1002/Cbic.201600677  0.356
2017 Chupani L, Zusková E, Niksirat H, Panáček A, Lünsmann V, Haange SB, von Bergen M, Jehmlich N. Effects of chronic dietary exposure of zinc oxide nanoparticles on the serum protein profile of juvenile common carp (Cyprinus carpio L.). The Science of the Total Environment. 579: 1504-1511. PMID 27916310 DOI: 10.1016/J.Scitotenv.2016.11.154  0.317
2016 Jehmlich N, Müller M, Meyer S, Tischer A, Potthast K, Michalzik B, von Bergen M. Proteome data on the microbial microbiome of grasshopper feces. Data in Brief. 9: 1147-1154. PMID 27995170 DOI: 10.1016/J.Dib.2016.11.033  0.356
2016 Starke R, Müller M, Gaspar M, Marz M, Küsel K, Totsche KU, von Bergen M, Jehmlich N. Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer. Journal of Proteomics. PMID 27838466 DOI: 10.1016/J.Jprot.2016.11.003  0.512
2016 Malik AA, Chowdhury S, Schlager V, Oliver A, Puissant J, Vazquez PG, Jehmlich N, von Bergen M, Griffiths RI, Gleixner G. Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling. Frontiers in Microbiology. 7: 1247. PMID 27555839 DOI: 10.3389/Fmicb.2016.01247  0.318
2016 Bastida F, Torres IF, Moreno JL, Baldrian P, Ondoño S, Ruiz-Navarro A, Hernández T, Richnow HH, Starke R, García C, Jehmlich N. The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon-availability in Mediterranean semiarid soils. Molecular Ecology. PMID 27481114 DOI: 10.1111/Mec.13783  0.677
2016 Goris T, Schiffmann CL, Gadkari J, Adrian L, von Bergen M, Diekert G, Jehmlich N. Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. Data in Brief. 8: 637-42. PMID 27437436 DOI: 10.1016/J.Dib.2016.06.022  0.364
2016 Ebenau-Jehle C, Mergelsberg M, Fischer S, Brüls T, Jehmlich N, von Bergen M, Boll M. An unusual strategy for the anoxic biodegradation of phthalate. The Isme Journal. PMID 27392087 DOI: 10.1038/Ismej.2016.91  0.369
2016 Jehmlich N, Stegmaier P, Golatowski C, Salazar MG, Rischke C, Henke M, Völker U. Proteome data of whole saliva which are associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy. Data in Brief. 8: 501-5. PMID 27358911 DOI: 10.1016/J.Dib.2016.05.053  0.3
2016 Bastida F, Jehmlich N. It's all about functionality: How can metaproteomics help us to discuss the attributes of ecological relevance in soil? Journal of Proteomics. 144: 159-161. PMID 27265322 DOI: 10.1016/J.Jprot.2016.06.002  0.352
2016 Haange SB, Jehmlich N. Proteomic interrogation of the gut microbiota: potential clinical impact. Expert Review of Proteomics. 13: 535-7. PMID 27187145 DOI: 10.1080/14789450.2016.1190652  0.369
2016 Lünsmann V, Kappelmeyer U, Taubert A, Nijenhuis I, von Bergen M, Heipieper HJ, Müller JA, Jehmlich N. Aerobic toluene degraders in the rhizosphere of a constructed wetland model show diurnal polyhydroxyalkanoate metabolism. Applied and Environmental Microbiology. PMID 27129963 DOI: 10.1128/Aem.00493-16  0.365
2016 Jehmlich N, Vogt C, Lünsmann V, Richnow HH, von Bergen M. Protein-SIP in environmental studies. Current Opinion in Biotechnology. 41: 26-33. PMID 27116035 DOI: 10.1016/J.Copbio.2016.04.010  0.645
2016 Men Y, Han P, Helbling DE, Jehmlich N, Herbold C, Gulde R, Onnis-Hayden A, Gu AZ, Johnson DR, Wagner M, Fenner K. Biotransformation of two pharmaceuticals by the ammonia-oxidizing archaeon Nitrososphaera gargensis. Environmental Science & Technology. PMID 27046099 DOI: 10.1021/Acs.Est.5B06016  0.321
2016 Schiffmann CL, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M, Jehmlich N. Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. Data in Brief. 7: 253-6. PMID 26958645 DOI: 10.1016/J.Dib.2016.02.037  0.602
2016 Starke R, Keller A, Jehmlich N, Vogt C, Richnow HH, Kleinsteuber S, von Bergen M, Seifert J. Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene. Microbial Ecology. PMID 26846217 DOI: 10.1007/S00248-016-0731-Y  0.799
2016 Oberbach A, Adams V, Schlichting N, Heinrich M, Kullnick Y, Lehmann S, Lehmann S, Feder S, Correia JC, Mohr FW, Völker U, Jehmlich N. Proteome profiles of HDL particles of patients with chronic heart failure are associated with immune response and also include bacteria proteins. Clinica Chimica Acta; International Journal of Clinical Chemistry. 453: 114-22. PMID 26688386 DOI: 10.1016/J.Cca.2015.12.005  0.341
2016 Starke R, Kermer R, Ullmann-Zeunert L, Baldwin IT, Seifert J, Bastida F, von Bergen M, Jehmlich N. Bacteria dominate the short-term assimilation of plant-derived N in soil Soil Biology and Biochemistry. 96: 30-38. DOI: 10.1016/J.Soilbio.2016.01.009  0.68
2015 Herbst FA, Lünsmann V, Kjeldal H, Jehmlich N, Tholey A, von Bergen M, Nielsen JL, Hettich RL, Seifert J, Nielsen PH. Enhancing Metaproteomics - The value of models and defined environmental microbial systems. Proteomics. PMID 26621789 DOI: 10.1002/Pmic.201500305  0.612
2015 Lünsmann V, Kappelmeyer U, Benndorf R, Martinez-Lavanchy PM, Taubert A, Adrian L, Duarte M, Pieper DH, von Bergen M, Müller JA, Heipieper HJ, Jehmlich N. In-situ Protein-SIP highlights Burkholderiaceae as key players degrading toluene by para ring hydroxylation in a constructed wetland model. Environmental Microbiology. PMID 26616584 DOI: 10.1111/1462-2920.13133  0.431
2015 Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, Bergen MV, Rattei T, Bendinger B, Nielsen PH, et al. Complete nitrification by Nitrospira bacteria. Nature. PMID 26610024 DOI: 10.1038/Nature16461  0.323
2015 Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G. Proteomics of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. Scientific Reports. 5: 13794. PMID 26387727 DOI: 10.1038/Srep13794  0.618
2015 Hartwig S, Thomas C, Krumova N, Quitzke V, Türkowsky D, Jehmlich N, Adrian L, Sawers RG. Heterologous Complementation Studies in Escherichia coli with the Hyp Accessory Protein Machinery from Chloroflexi Provide Insight into [NiFe]-Hydrogenase Large Subunit Recognition by the HypC Protein Family. Microbiology (Reading, England). PMID 26364315 DOI: 10.1099/Mic.0.000177  0.329
2015 Bastida F, Jehmlich N, Lima K, Morris BE, Richnow HH, Hernández T, von Bergen M, García C. The ecological and physiological responses of the microbial community from a semiarid soil to hydrocarbon contamination and its bioremediation using compost amendment. Journal of Proteomics. PMID 26225916 DOI: 10.1016/J.Jprot.2015.07.023  0.362
2015 Depke M, Michalik S, Rabe A, Surmann K, Brinkmann L, Jehmlich N, Bernhardt J, Hecker M, Wollscheid B, Sun Z, Moritz RL, Völker U, Schmidt F. A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies. Proteomics. PMID 26224020 DOI: 10.1002/Pmic.201500091  0.355
2015 Palatinszky M, Herbold C, Jehmlich N, Pogoda M, Han P, von Bergen M, Lagkouvardos I, Karst SM, Galushko A, Koch H, Berry D, Daims H, Wagner M. Cyanate as an energy source for nitrifiers. Nature. 524: 105-8. PMID 26222031 DOI: 10.1038/Nature14856  0.319
2015 Aeberhard L, Banhart S, Fischer M, Jehmlich N, Rose L, Koch S, Laue M, Renard BY, Schmidt F, Heuer D. The Proteome of the Isolated Chlamydia trachomatis Containing Vacuole Reveals a Complex Trafficking Platform Enriched for Retromer Components. Plos Pathogens. 11: e1004883. PMID 26042774 DOI: 10.1371/Journal.Ppat.1004883  0.327
2015 Grob C, Taubert M, Howat AM, Burns OJ, Dixon JL, Richnow HH, Jehmlich N, von Bergen M, Chen Y, Murrell JC. Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph. Environmental Microbiology. PMID 26033676 DOI: 10.1111/1462-2920.12935  0.405
2015 Schaubeck M, Clavel T, Calasan J, Lagkouvardos I, Haange SB, Jehmlich N, Basic M, Dupont A, Hornef M, Bergen MV, Bleich A, Haller D. Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence. Gut. PMID 25887379 DOI: 10.1136/Gutjnl-2015-309333  0.7
2015 Kümmel S, Herbst FA, Bahr A, Duarte M, Pieper DH, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow HH, Vogt C. Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers. Fems Microbiology Ecology. 91. PMID 25764566 DOI: 10.1093/Femsec/Fiv006  0.733
2015 Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O. MetaProSIP: automated inference of stable isotope incorporation rates in proteins for functional metaproteomics. Journal of Proteome Research. 14: 619-27. PMID 25412983 DOI: 10.1021/Pr500245W  0.662
2015 Pöritz M, Schiffmann CL, Hause G, Heinemann U, Seifert J, Jehmlich N, von Bergen M, Nijenhuis I, Lechner U. Dehalococcoides mccartyi strain DCMB5 Respires a broad spectrum of chlorinated aromatic compounds. Applied and Environmental Microbiology. 81: 587-96. PMID 25381236 DOI: 10.1128/Aem.02597-14  0.586
2015 Schaubeck M, Clavel T, Lagkouvardos I, Calasan J, Haange S, Jehmlich N, Bergen Mv, Basic M, Bleich A, Haller D. Transmissive Crohn's disease-like ileitis is caused by functional dysbiosis in the intestinal microbiota independent of inflammation-driven Paneth cell failure Journal of Crohns & Colitis. DOI: 10.1093/Ecco-Jcc/Jju027.001  0.703
2015 Schaubeck M, Clavel T, Lagkouvardos I, Calasan J, Haange S, Jehmlich N, Bergen Mv, Basic M, Bleich A, Haller D. 266 Transmissive Crohn's Disease-Like Ileitis Is Caused by Functional Dysbiosis in the Intestinal Microbiota Independent of Inflammation-Driven Paneth Cell Failure Gastroenterology. 148. DOI: 10.1016/S0016-5085(15)30211-0  0.703
2015 Bastida F, García C, von Bergen M, Moreno JL, Richnow HH, Jehmlich N. Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study Applied Soil Ecology. 93: 65-67. DOI: 10.1016/J.Apsoil.2015.04.006  0.404
2014 Reina R, Kellner H, Jehmlich N, Ullrich R, García-Romera I, Aranda E, Liers C. Differences in the secretion pattern of oxidoreductases from Bjerkandera adusta induced by a phenolic olive mill extract. Fungal Genetics and Biology : Fg & B. 72: 99-105. PMID 25069088 DOI: 10.1016/J.Fgb.2014.07.009  0.371
2014 Jehmlich N, Golatowski C, Murr A, Salazar G, Dhople VM, Hammer E, Völker U. Comparative evaluation of peptide desalting methods for salivary proteome analysis. Clinica Chimica Acta; International Journal of Clinical Chemistry. 434: 16-20. PMID 24751662 DOI: 10.1016/J.Cca.2014.04.003  0.315
2014 Schiffmann CL, Jehmlich N, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M. Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. Journal of Proteomics. 98: 59-64. PMID 24374378 DOI: 10.1016/J.Jprot.2013.12.009  0.652
2014 Schiffmann C, Hansen R, Baumann S, Kublik A, Nielsen PH, Adrian L, von Bergen M, Jehmlich N, Seifert J. Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM). Analytical and Bioanalytical Chemistry. 406: 283-91. PMID 24220761 DOI: 10.1007/S00216-013-7451-7  0.615
2014 Bastida F, Jehmlich N, Ondoño S, Bergen Mv, García C, Moreno JL. Characterization of the microbial community in biological soil crusts dominated by Fulgensia desertorum (Tomin) Poelt and Squamarina cartilaginea (With.) P. James and in the underlying soil Soil Biology & Biochemistry. 76: 70-79. DOI: 10.1016/J.Soilbio.2014.05.004  0.751
2013 Carabajal M, Kellner H, Levin L, Jehmlich N, Hofrichter M, Ullrich R. The secretome of Trametes versicolor grown on tomato juice medium and purification of the secreted oxidoreductases including a versatile peroxidase. Journal of Biotechnology. 168: 15-23. PMID 23948257 DOI: 10.1016/J.Jbiotec.2013.08.007  0.362
2013 Salazar MG, Jehmlich N, Murr A, Dhople VM, Holtfreter B, Hammer E, Völker U, Kocher T. Identification of periodontitis associated changes in the proteome of whole human saliva by mass spectrometric analysis. Journal of Clinical Periodontology. 40: 825-32. PMID 23790309 DOI: 10.1111/Jcpe.12130  0.361
2013 von Bergen M, Jehmlich N, Taubert M, Vogt C, Bastida F, Herbst FA, Schmidt F, Richnow HH, Seifert J. Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology. The Isme Journal. 7: 1877-85. PMID 23677009 DOI: 10.1038/Ismej.2013.78  0.768
2013 Seifert J, Herbst FA, Halkjaer Nielsen P, Planes FJ, Jehmlich N, Ferrer M, von Bergen M. Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities. Proteomics. 13: 2786-804. PMID 23625762 DOI: 10.1002/Pmic.201200566  0.643
2013 Herbst FA, Taubert M, Jehmlich N, Behr T, Schmidt F, von Bergen M, Seifert J. Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation. Molecular & Cellular Proteomics : McP. 12: 2060-9. PMID 23603340 DOI: 10.1074/Mcp.M112.025627  0.645
2013 Feig MA, Hammer E, Völker U, Jehmlich N. In-depth proteomic analysis of the human cerumen-a potential novel diagnostically relevant biofluid. Journal of Proteomics. 83: 119-29. PMID 23517718 DOI: 10.1016/J.Jprot.2013.03.004  0.32
2013 Golatowski C, Salazar MG, Dhople VM, Hammer E, Kocher T, Jehmlich N, Völker U. Comparative evaluation of saliva collection methods for proteome analysis. Clinica Chimica Acta; International Journal of Clinical Chemistry. 419: 42-6. PMID 23384500 DOI: 10.1016/J.Cca.2013.01.013  0.335
2013 Jehmlich N, Dinh KH, Gesell-Salazar M, Hammer E, Steil L, Dhople VM, Schurmann C, Holtfreter B, Kocher T, Völker U. Quantitative analysis of the intra- and inter-subject variability of the whole salivary proteome. Journal of Periodontal Research. 48: 392-403. PMID 23164135 DOI: 10.1111/Jre.12025  0.308
2012 Nghi do H, Bittner B, Kellner H, Jehmlich N, Ullrich R, Pecyna MJ, Nousiainen P, Sipilä J, Huong le M, Hofrichter M, Liers C. The wood rot ascomycete Xylaria polymorpha produces a novel GH78 glycoside hydrolase that exhibits α-L-rhamnosidase and feruloyl esterase activities and releases hydroxycinnamic acids from lignocelluloses. Applied and Environmental Microbiology. 78: 4893-901. PMID 22544251 DOI: 10.1128/Aem.07588-11  0.317
2012 Seifert J, Taubert M, Jehmlich N, Schmidt F, Völker U, Vogt C, Richnow HH, von Bergen M. Protein-based stable isotope probing (protein-SIP) in functional metaproteomics. Mass Spectrometry Reviews. 31: 683-97. PMID 22422553 DOI: 10.1002/Mas.21346  0.765
2012 Jehmlich N, Kopinke FD, Lenhard S, Vogt C, Herbst FA, Seifert J, Lissner U, Völker U, Schmidt F, von Bergen M. Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ). Proteomics. 12: 37-42. PMID 22106033 DOI: 10.1002/Pmic.201100057  0.732
2012 Jehmlich N, Hübschmann T, Schmidt F, Bergen MV, Müller S. Charakterisierung von mikrobiellen Gemeinschaften Biospektrum. 18: 264-267. DOI: 10.1007/S12268-012-0174-Z  0.393
2011 Taubert M, Jehmlich N, Vogt C, Richnow HH, Schmidt F, von Bergen M, Seifert J. Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments. Proteomics. 11: 2265-74. PMID 21598395 DOI: 10.1002/Pmic.201000788  0.737
2010 Jehmlich N, Schmidt F, Taubert M, Seifert J, Bastida F, von Bergen M, Richnow HH, Vogt C. Protein-based stable isotope probing. Nature Protocols. 5: 1957-66. PMID 21127489 DOI: 10.1038/Nprot.2010.166  0.75
2010 Jehmlich N, Kleinsteuber S, Vogt C, Benndorf D, Harms H, Schmidt F, Von Bergen M, Seifert J. Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community. Journal of Applied Microbiology. 109: 1937-45. PMID 21070515 DOI: 10.1111/J.1365-2672.2010.04823.X  0.805
2010 Jehmlich N, Hübschmann T, Salazar MG, Völker U, Benndorf D, Müller S, Bergen Mv, Schmidt F. Advanced tool for characterization of microbial cultures by combining cytomics and proteomics. Applied Microbiology and Biotechnology. 88: 575-584. PMID 20676634 DOI: 10.1007/S00253-010-2753-6  0.749
2010 Fetzer I, Jehmlich N, Vogt C, Richnow HH, Seifert J, Harms H, von Bergen M, Schmidt F. Calculation of partial isotope incorporation into peptides measured by mass spectrometry. Bmc Research Notes. 3: 178. PMID 20576105 DOI: 10.1186/1756-0500-3-178  0.73
2010 Bastida F, Rosell M, Franchini AG, Seifert J, Finsterbusch S, Jehmlich N, Jechalke S, von Bergen M, Richnow HH. Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach. Fems Microbiology Ecology. 73: 370-84. PMID 20491917 DOI: 10.1111/J.1574-6941.2010.00889.X  0.648
2010 Leibeling S, Schmidt F, Jehmlich N, Von Bergen M, Müller RH, Harms H. Declining capacity of starving delftia acidovorans MC1 to degrade phenoxypropionate herbicides correlates with oxidative modification of the initial enzyme Environmental Science and Technology. 44: 3793-3799. PMID 20397636 DOI: 10.1021/Es903619J  0.38
2010 Jehmlich N, Fetzer I, Seifert J, Mattow J, Vogt C, Harms H, Thiede B, Richnow HH, Von Bergen M, Schmidt F. Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species Molecular and Cellular Proteomics. 9: 1221-1227. PMID 20064840 DOI: 10.1074/Mcp.M900407-Mcp200  0.739
2010 Selesi D, Jehmlich N, Bergen Mv, Schmidt F, Rattei T, Tischler P, Lueders T, Meckenstock RU. Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47 Journal of Bacteriology. 192: 295-306. PMID 19854898 DOI: 10.1128/Jb.00874-09  0.346
2010 Fetzer I, Jehmlich N, Vogt C, Richnow HH, Seifert J, Harms H, Von Bergen M, Schmidt F. Calculation of partial isotope incorporation into peptides measured by mass spectrometry Bmc Research Notes. 3. DOI: 10.1186/1756-0500-3-178  0.669
2009 Risch M, Georgieva D, Bergen Mv, Jehmlich N, Genov N, Arni RK, Betzel C. Snake venomics of the Siamese Russell's viper (Daboia russelli siamensis) — Relation to pharmacological activities Journal of Proteomics. 72: 256-269. PMID 19457351 DOI: 10.1016/J.Jprot.2009.01.006  0.332
2009 Junghanns C, Pecyna MJ, Böhm D, Jehmlich N, Martin C, von Bergen M, Schauer F, Hofrichter M, Schlosser D. Biochemical and molecular genetic characterisation of a novel laccase produced by the aquatic ascomycete Phoma sp. UHH 5-1-03. Applied Microbiology and Biotechnology. 84: 1095-105. PMID 19455326 DOI: 10.1007/S00253-009-2028-2  0.362
2009 Jehmlich N, Schmidt F, Taubert M, Seifert J, von Bergen M, Richnow HH, Vogt C. Comparison of methods for simultaneous identification of bacterial species and determination of metabolic activity by protein-based stable isotope probing (Protein-SIP) experiments. Rapid Communications in Mass Spectrometry : Rcm. 23: 1871-8. PMID 19449321 DOI: 10.1002/Rcm.4084  0.754
2009 Wischgoll S, Taubert M, Peters F, Jehmlich N, Bergen Mv, Boll M. Decarboxylating and Nondecarboxylating Glutaryl-Coenzyme A Dehydrogenases in the Aromatic Metabolism of Obligately Anaerobic Bacteria Journal of Bacteriology. 191: 4401-4409. PMID 19395484 DOI: 10.1128/Jb.00205-09  0.313
2009 Benndorf D, Vogt C, Jehmlich N, Schmidt Y, Thomas H, Woffendin G, Shevchenko A, Richnow HH, von Bergen M. Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments. Biodegradation. 20: 737-50. PMID 19381451 DOI: 10.1007/S10532-009-9261-3  0.653
2009 Schleinitz KM, Schmeling S, Jehmlich N, Von Bergen M, Harms H, Kleinsteuber S, Vogt C, Fuchs G. Phenol degradation in the strictly anaerobic iron-reducing bacterium Geobacter metallireducens GS-15 Applied and Environmental Microbiology. 75: 3912-3919. PMID 19376902 DOI: 10.1128/Aem.01525-08  0.716
2008 Jehmlich N, Schmidt F, Hartwich M, von Bergen M, Richnow HH, Vogt C. Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP). Rapid Communications in Mass Spectrometry : Rcm. 22: 2889-97. PMID 18727149 DOI: 10.1002/Rcm.3684  0.672
2008 Jehmlich N, Schmidt F, von Bergen M, Richnow HH, Vogt C. Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures. The Isme Journal. 2: 1122-33. PMID 18563188 DOI: 10.1038/Ismej.2008.64  0.659
2008 Thiele B, Rieder O, Jehmlich N, Bergen Mv, Müller M, Boll M. Aromatizing cyclohexa-1,5-diene-1-carbonyl-coenzyme A oxidase. Characterization and its role in anaerobic aromatic metabolism. Journal of Biological Chemistry. 283: 20713-20721. PMID 18505724 DOI: 10.1074/Jbc.M802841200  0.345
2007 Martin C, Pecyna M, Kellner H, Jehmlich N, Junghanns C, Benndorf D, Bergen Mv, Schlosser D. Purification and biochemical characterization of a laccase from the aquatic fungus Myrioconium sp. UHH 1-13-18-4 and molecular analysis of the laccase-encoding gene. Applied Microbiology and Biotechnology. 77: 613-624. PMID 17955194 DOI: 10.1007/S00253-007-1207-2  0.737
2007 Kellner H, Jehmlich N, Benndorf D, Hoffmann R, Rühl M, Hoegger PJ, Majcherczyk A, Kües U, Bergen Mv, Buscot F. Detection, quantification and identification of fungal extracellular laccases using polyclonal antibody and mass spectrometry Enzyme and Microbial Technology. 41: 694-701. DOI: 10.1016/J.Enzmictec.2007.06.002  0.726
Show low-probability matches.