Ugur Sezerman - Publications

Affiliations: 
1991-1996 Biomedical Engineering Boston University, Boston, MA, United States 

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Aydın M, Demir D, Seymen N, Sudqi Said S, Oktem-Okullu S, Tiftikci A, Cicek B, Tokat F, Tozun N, Ince U, Sezerman U, Sayi-Yazgan A. The Crosstalk between H. pylori virulence factors and the PD1:PD-L1 immune checkpoint inhibitors in progression to gastric cancer. Immunology Letters. PMID 34363898 DOI: 10.1016/j.imlet.2021.06.009  1
2021 Bozkurt T, Alanay Y, Isik U, Sezerman U. Re-analysis of whole-exome sequencing data reveals a novel splicing variant in the SLC2A1 in a patient with GLUT1 Deficiency Syndrome 1 accompanied by hemangioma: a case report. Bmc Medical Genomics. 14: 197. PMID 34332575 DOI: 10.1186/s12920-021-01045-3  1
2021 Albayrak İG, Azhari F, Çolak EN, Balcı BK, Ülgen E, Sezerman U, Baştu E, Günel T. Endometrial gene expression profiling of recurrent implantation failure after in vitro fertilization. Molecular Biology Reports. PMID 34216338 DOI: 10.1007/s11033-021-06502-x  1
2021 Gucyetmez B, Tuzuner F, Atalan HK, Sezerman U, Gucyetmez K, Telci L. Base-excess chloride; the best approach to evaluate the effect of chloride on the acid-base status: A retrospective study. Plos One. 16: e0250274. PMID 33914794 DOI: 10.1371/journal.pone.0250274  0.01
2020 Shehata M, Unlu A, Sezerman U, Timucin E. Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability. The Journal of Physical Chemistry. B. 124: 8801-8810. PMID 32940465 DOI: 10.1021/Acs.Jpcb.0C07041  1
2020 Oktem-Okullu S, Cekic-Kipritci Z, Kilic E, Seymen N, Mansur-Ozen N, Sezerman U, Gurol Y. Analysis of Correlation between the Seven Important (. ) Virulence Factors and Drug Resistance in Patients with Gastritis. Gastroenterology Research and Practice. 2020: 3956838. PMID 32908495 DOI: 10.1155/2020/3956838  1
2020 Altinoz MA, Ucal Y, Yilmaz MC, Kiris İ, Ozisik O, Sezerman U, Ozpinar A, Elmaci İ. Progesterone at high doses reduces the growth of U87 and A172 glioblastoma cells: Proteomic changes regarding metabolism and immunity. Cancer Medicine. 9: 5767-5780. PMID 32590878 DOI: 10.1002/cam4.3223  0.01
2020 Akkiprik M, Koca S, Uğurlu MÜ, Ekren R, Peker Eyüboğlu İ, Alan Ö, Erzik C, Güllü Amuran G, Telli TA, Güllüoğlu MB, Sezerman U, Yumuk PF. Response Assessment With Molecular Characterization of Circulating Tumor Cells and Plasma MicroRNA Profiling in Patients With Locally Advanced Breast Cancer During Neoadjuvant Chemotherapy. Clinical Breast Cancer. PMID 32201164 DOI: 10.1016/J.Clbc.2020.02.006  0.01
2020 Saeed S, Mehreen H, Gerlevik U, Tariq A, Manzoor S, Noreen Z, Sezerman U, Bokhari H. HriGFP Novel Flourescent Protein: Expression and Applications. Molecular Biotechnology. 62: 280-288. PMID 32108285 DOI: 10.1007/S12033-020-00243-1  1
2020 Demiral Keleş I, Ülgen E, Erkan MB, Çelik SE, Aydın Y, Önem AN, Kandemir H, Arslanoğlu T, Apak MR, Sezerman U, Yeh J, Buyru F, Baştu E. Comparison of endometrial prostanoid profiles in three infertile subgroups: the missing part of receptivity? Fertility and Sterility. PMID 32061358 DOI: 10.1016/J.Fertnstert.2019.10.017  1
2020 Mehreen H, Saeed S, Gerlevik U, Tariq A, Sezerman U, Noreen Z, Zhang X, Hassan S, Bokhari H. Expression and Applications of HriCFP in E. coli: A Novel Biosensing Fluorescent Protein Journal of Microbial & Biochemical Technology. 12: 1-7. DOI: 10.35248/1948-5948.20.12.434  1
2020 Yenenler A, Gerlevik U, Sezerman U. Understanding the impacts of self-shuffling approach on structure and function of shuffled endoglucanase enzyme via MD simulations Turkish Journal of Biochemistry-Turk Biyokimya Dergisi. 45. DOI: 10.1515/Tjb-2018-0180  1
2019 Ertuzun T, Semerci A, Cakir ME, Ekmekcioglu A, Gok MO, Soltys DT, de Souza-Pinto NC, Sezerman U, Muftuoglu M. Investigation of base excision repair gene variants in late-onset Alzheimer's disease. Plos One. 14: e0221362. PMID 31415677 DOI: 10.1371/Journal.Pone.0221362  0.01
2019 Demiray SB, Goker ENT, Tavmergen E, Yilmaz O, Calimlioglu N, Soykam HO, Oktem G, Sezerman U. Differential gene expression analysis of human cumulus cells. Clinical and Experimental Reproductive Medicine. 46: 76-86. PMID 31181875 DOI: 10.5653/Cerm.2019.46.2.76  1
2019 Saygı C, Alanay Y, Sezerman U, Yenenler A, Özören N. A possible founder mutation in FZD6 gene in a Turkish family with autosomal recessive nail dysplasia. Bmc Medical Genetics. 20: 15. PMID 30642273 DOI: 10.1186/S12881-019-0746-6  1
2018 Bastu E, Demiral I, Gunel T, Ulgen E, Gumusoglu E, Hosseini MK, Sezerman U, Buyru F, Yeh J. Potential Marker Pathways in the Endometrium That May Cause Recurrent Implantation Failure. Reproductive Sciences (Thousand Oaks, Calif.). 1933719118792104. PMID 30081718 DOI: 10.1177/1933719118792104  1
2017 Demiray SB, Yilmaz O, Goker ENT, Tavmergen E, Calimlioglu N, Sezerman U, Soykam HO, Oktem G. Expression of the Bone Morphogenetic Protein-2 (BMP2) in the Human Cumulus Cells as a Biomarker of Oocytes and Embryo Quality. Journal of Human Reproductive Sciences. 10: 194-200. PMID 29142448 DOI: 10.4103/Jhrs.Jhrs_21_17  1
2017 Ozer B, Sezerman U. An integrative study on the impact of highly differentially methylated genes on expression and cancer etiology. Plos One. 12: e0171694. PMID 28178311 DOI: 10.1371/Journal.Pone.0171694  1
2017 Kandemir B, Dag U, Bakir Gungor B, Durasi İM, Erdogan B, Sahin E, Sezerman U, Aksan Kurnaz I. In silico analyses and global transcriptional profiling reveal novel putative targets for Pea3 transcription factor related to its function in neurons. Plos One. 12: e0170585. PMID 28158215 DOI: 10.1371/Journal.Pone.0170585  1
2017 Ozer B, Sezerman U. Analysis of the interplay between methylation and expression reveals its potential role in cancer aetiology. Functional & Integrative Genomics. 17: 53-68. PMID 27819121 DOI: 10.1007/S10142-016-0533-9  1
2017 Demiral I, Bastu E, Gunel T, Sezerman U, Gumusoglu E, Ulgen E, Hosseini MK, Buyru F, Yeh J. Endometrial gene expression in patients with recurrent implantation failure Fertility and Sterility. 108. DOI: 10.1016/J.Fertnstert.2017.07.1068  1
2016 Yukselen O, Timucin E, Sezerman U. Predicting the impact of mutations on the specific activity of Bacillus thermocatenulatus lipase using a combined approach of docking and molecular dynamics. Journal of Molecular Recognition : Jmr. 29: 466-75. PMID 27074770 DOI: 10.1002/Jmr.2545  1
2016 Kalkan Z, Durasi İM, Sezerman U, Atasever-Arslan B. Potential of GRID2 receptor gene for preventing TNF-induced neurodegeneration in autism. Neuroscience Letters. 620: 62-9. PMID 27019035 DOI: 10.1016/J.Neulet.2016.03.043  1
2016 Angione C, Liò P, Pucciarelli S, Can B, Conway M, Lotti M, Bokhari H, Mancini A, Sezerman U, Telatin A. Bioinformatics Challenges and Potentialities in Studying Extreme Environments Lecture Notes in Computer Science. 9874: 205-219. DOI: 10.1007/978-3-319-44332-4_16  1
2015 Oktem-Okullu S, Tiftikci A, Saruc M, Cicek B, Vardareli E, Tozun N, Kocagoz T, Sezerman U, Yavuz AS, Sayi-Yazgan A. Multiplex-PCR-Based Screening and Computational Modeling of Virulence Factors and T-Cell Mediated Immunity in Helicobacter pylori Infections for Accurate Clinical Diagnosis. Plos One. 10: e0136212. PMID 26287606 DOI: 10.1371/Journal.Pone.0136212  1
2015 Bayram Akcapinar G, Venturini A, Martelli PL, Casadio R, Sezerman UO. Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches. Protein Engineering, Design & Selection : Peds. 28: 127-35. PMID 25784767 DOI: 10.1093/protein/gzv012  1
2013 Durmaz E, Kuyucak S, Sezerman UO. Modifying the catalytic preference of tributyrin in Bacillus thermocatenulatus lipase through in-silico modeling of enzyme-substrate complex. Protein Engineering, Design & Selection : Peds. 26: 325-33. PMID 23424251 DOI: 10.1093/protein/gzt004  0.01
2013 Kautto L, Grinyer J, Paulsen I, Tetu S, Pillai A, Pardiwalla S, Sezerman U, Akcapinar GB, Bergquist P, Te'o J, Nevalainen H. Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in Trichoderma reesei Rut-C30. New Biotechnology. 30: 183-91. PMID 22877981 DOI: 10.1016/J.Nbt.2012.07.005  1
2013 Eser EM, Arslan BR, Sezerman UO. Classification of cohesin family using class specific motifs 2013 8th International Symposium On Health Informatics and Bioinformatics, Hibit 2013. DOI: 10.1109/HIBIT.2013.6661687  1
2012 Bayram Akcapinar G, Gul O, Sezerman UO. From in silico to in vitro: modelling and production of Trichoderma reesei endoglucanase 1 and its mutant in Pichia pastoris. Journal of Biotechnology. 159: 61-8. PMID 22426095 DOI: 10.1016/j.jbiotec.2012.01.001  1
2012 Anbar M, Gul O, Lamed R, Sezerman UO, Bayer EA. Improved thermostability of Clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis. Applied and Environmental Microbiology. 78: 3458-64. PMID 22389377 DOI: 10.1128/Aem.07985-11  1
2012 Uzbas F, Sezerman U, Hartl L, Kubicek CP, Seiboth B. A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background. Applied Microbiology and Biotechnology. 93: 1601-8. PMID 22080343 DOI: 10.1007/S00253-011-3674-8  1
2012 Altintas Z, Kallempudi SS, Sezerman U, Gurbuz Y. A novel magnetic particle-modified electrochemical sensor for immunosensor applications Sensors and Actuators B-Chemical. 174: 187-194. DOI: 10.1016/J.Snb.2012.08.052  1
2011 Akcapinar GB, Gul O, Sezerman U. Effect of codon optimization on the expression of Trichoderma reesei endoglucanase 1 in Pichia pastoris. Biotechnology Progress. 27: 1257-63. PMID 21774095 DOI: 10.1002/Btpr.663  1
2011 Seidl-Seiboth V, Gruber S, Sezerman U, Schwecke T, Albayrak A, Neuhof T, von Döhren H, Baker SE, Kubicek CP. Novel hydrophobins from Trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing. Journal of Molecular Evolution. 72: 339-51. PMID 21424760 DOI: 10.1007/S00239-011-9438-3  1
2011 Cobanoglu MC, Saygin Y, Sezerman U. Classification of GPCRs using family specific motifs. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 1495-508. PMID 20876934 DOI: 10.1109/Tcbb.2010.101  0.01
2011 Mega Tiber P, Orun O, Nacar C, Sezerman UO, Severcan F, Severcan M, Matagne A, Kan B. Structural characterization of recombinant bovine Goα by spectroscopy and homology modeling Spectroscopy. 26: 213-229. DOI: 10.3233/SPE-2011-0543  1
2010 Ozdemir Ozgenturk N, Oruç F, Sezerman U, Kuçukural A, Vural Korkut S, Toksoz F, Un C. Generation and Analysis of Expressed Sequence Tags from Olea europaea L. Comparative and Functional Genomics. 2010: 757512. PMID 21197085 DOI: 10.1155/2010/757512  0.01
2010 Albayrak A, Otu HH, Sezerman UO. Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets. Bmc Bioinformatics. 11: 428. PMID 20718947 DOI: 10.1186/1471-2105-11-428  1
2010 Ozgenturk NO, Oru F, Sezerman U, Kuçukural A, Korkut SV, Toksoz F, Un C. Generation and analysis of expressed sequence tags from Olea europaea L. Comparative and Functional Genomics. 2010. DOI: 10.1155/2010/757512  1
2009 Yeniterzi S, Sezerman U. EnzyMiner: automatic identification of protein level mutations and their impact on target enzymes from PubMed abstracts. Bmc Bioinformatics. 10: S2. PMID 19758466 DOI: 10.1186/1471-2105-10-S8-S2  0.01
2009 Cakici S, Sumengen S, Sezerman U, Balcisoy S. DockPro: A VR-Based Tool for Protein-Protein Docking Problem International Journal of Virtual Reality. 8: 19-23. DOI: 10.20870/Ijvr.2009.8.2.2720  0.01
2008 Saravan KS, Gul O, Basaga H, Sezerman U, Gurbuz Y. Label-Free Biosensors for the Detection and Quantification of Cardiovascular Risk Markers Sensor Letters. 6: 873-877. DOI: 10.1166/Sl.2008.521  1
2007 Gül Ö, Calay ES, Sezerman U, Başağa H, Gürbüz Y. Sandwich-type, antibody microarrays for the detection and quantification of cardiovascular risk markers Sensors and Actuators B-Chemical. 125: 581-588. DOI: 10.1016/J.Snb.2007.03.005  0.01
2006 Budak H, Kasap Z, Shearman RC, Dweikat I, Sezerman U, Mahmood A. Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides. Molecular Biotechnology. 34: 293-301. PMID 17284777 DOI: 10.1385/Mb:34:3:293  1
2005 Bilecen K, Ozturk UH, Duru AD, Sutlu T, Petoukhov MV, Svergun DI, Koch MH, Sezerman UO, Cakmak I, Sayers Z. Triticum durum metallothionein. Isolation of the gene and structural characterization of the protein using solution scattering and molecular modeling. The Journal of Biological Chemistry. 280: 13701-11. PMID 15632113 DOI: 10.1074/Jbc.M412984200  0.04
1996 Sezerman U, Vajda S, Delisi C. Free energy mapping of class I MHC molecules and structural determination of bound peptides Protein Science. 5: 1272-1281. PMID 8819160 DOI: 10.1002/Pro.5560050706  1
1993 Sezerman U, Vajda S, Cornette J, DeLisi C. Toward computational determination of peptide-receptor structure Protein Science. 2: 1827-1843. PMID 7505681 DOI: 10.1002/Pro.5560021105  1
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