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Takuji Yamada - Publications

Affiliations: 
Bioinformatics Boston University, Boston, MA 
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Darzi Y, Yamate Y, Yamada T. FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization. Bioinformatics (Oxford, England). PMID 31004476 DOI: 10.1093/Bioinformatics/Btz245  0.323
2018 Darzi Y, Letunic I, Bork P, Yamada T. iPath3.0: interactive pathways explorer v3. Nucleic Acids Research. PMID 29718427 DOI: 10.1093/Nar/Gky299  0.364
2015 Kaneda H, Shimizu M, Ohta K, Ushijima K, Gotoh Y, Satomura K, Nagai T, Fujieda M, Morooka M, Yamada T, Yamada M, Wada N, Takaai M, Hashimoto Y, Uemura O. Population pharmacokinetics of mizoribine in pediatric patients with kidney disease. Clinical and Experimental Nephrology. PMID 26649561 DOI: 10.1007/S10157-015-1209-9  0.306
2015 Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Chatton B, Inoue K, Uchiyama T, Ishibashi K, Yamada T, Ohno N, Shirahige K, Okada-Hatakeyama M, Ishii S. The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory. Nature Immunology. 16: 1034-43. PMID 26322480 DOI: 10.1038/Ni.3257  0.332
2015 Sato Y, Yamagishi J, Yamashita R, Shinozaki N, Ye B, Yamada T, Yamamoto M, Nagasaki M, Tsuboi A. Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals. Plos One. 10: e0131607. PMID 26121551 DOI: 10.1371/Journal.Pone.0131607  0.352
2015 Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T. FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data. Plos One. 10: e0126967. PMID 25974630 DOI: 10.1371/Journal.Pone.0126967  0.522
2015 Yamada T, Yukutake Y, Terakawa T, Arai R. Migration of earthquakes with a small stress drop in the Tanzawa Mountains, Japan Earth, Planets and Space. 67. DOI: 10.1186/S40623-015-0344-6  0.432
2015 Urano S, Hiramatsu Y, Yamada T. Relationship between coseismic slip and static stress drop of similar aftershocks of the 2007 Noto Hanto earthquake Seismology Earth, Planets and Space. 67. DOI: 10.1186/S40623-015-0277-0  0.45
2015 Katsumata K, Kosuga M, Katao H, Yamada T, Kato A. Focal mechanisms and stress field in the Nobi fault area, central Japan Seismology Earth, Planets and Space. 67. DOI: 10.1186/S40623-015-0275-2  0.442
2008 Letunic I, Yamada T, Kanehisa M, Bork P. iPath: interactive exploration of biochemical pathways and networks. Trends in Biochemical Sciences. 33: 101-3. PMID 18276143 DOI: 10.1016/J.Tibs.2008.01.001  0.358
2007 Hu Z, Ng DM, Yamada T, Chen C, Kawashima S, Mellor J, Linghu B, Kanehisa M, Stuart JM, DeLisi C. VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research. 35: W625-32. PMID 17586824 DOI: 10.1093/Nar/Gkm295  0.527
2005 Yamada T, Kawashima S, Mamitsuka H, Goto S, Kanehisa M. Comprehensive analysis and prediction of synthetic lethality using subcellular locations. Genome Informatics. International Conference On Genome Informatics. 16: 150-8. PMID 16362917 DOI: 10.11234/Gi1990.16.150  0.612
2005 Hu Z, Mellor J, Wu J, Yamada T, Holloway D, Delisi C. VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Research. 33: W352-7. PMID 15980487 DOI: 10.1093/Nar/Gki431  0.652
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