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Akhilesh Pandey, M.D., Ph.D. - Publications

Biological Chemistry Johns Hopkins University School of Medicine, Baltimore, MD, United States 
signaling and biomarker discovery

166 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, ... ... Pandey A, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/j.cell.2016.05.069  0.72
2016 Bhattacharjee M, Balakrishnan L, Renuse S, Advani J, Goel R, Sathe G, Keshava Prasad TS, Nair B, Jois R, Shankar S, Pandey A. Synovial fluid proteome in rheumatoid arthritis. Clinical Proteomics. 13: 12. PMID 27274716 DOI: 10.1186/s12014-016-9113-1  0.72
2016 Mitchell CJ, Kim MS, Na CH, Pandey A. PyQuant: a versatile framework for analysis of quantitative mass spectrometry data. Molecular & Cellular Proteomics : McP. PMID 27231314 DOI: 10.1074/mcp.O115.056879  0.72
2016 Mitchell CJ, Kim MS, Zhong J, Nirujogi RS, Bose AK, Pandey A. Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans. Molecular Oncology. PMID 27067626 DOI: 10.1016/j.molonc.2016.03.003  0.72
2016 Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Chavan S, Pandey A, Patil AH, Solanki H, Renuse S, Sahasrabuddhe NA, Mathur PP, Prasad TS, Kumar P, Califano JA, Sidransky D, ... Pandey A, et al. Dysregulation of splicing proteins in head and neck squamous cell carcinoma. Cancer Biology & Therapy. 0. PMID 26853621 DOI: 10.1080/15384047.2016.1139234  0.72
2016 Jhaveri DT, Kim MS, Thompson ED, Huang L, Sharma R, Klein AP, Zheng L, Le DT, Laheru DA, Pandey A, Jaffee EM, Anders RA. Using Quantitative Seroproteomics to Identify Antibody Biomarkers in Pancreatic Cancer. Cancer Immunology Research. PMID 26842750 DOI: 10.1158/2326-6066.CIR-15-0200-T  0.72
2016 Mirsafian H, Manda SS, Mitchell CJ, Sreenivasamurthy S, Ripen AM, Mohamad SB, Merican AF, Pandey A. Long non-coding RNA expression in human primary monocytes. Genomics. PMID 26778813 DOI: 10.1016/j.ygeno.2016.01.002  0.72
2015 Pawar H, Srikanth SM, Kashyap MK, Sathe G, Chavan S, Singal M, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Pandey A, Prasad TS, Gowda H, Kumar RV. Downregulation of S100 Calcium Binding Protein A9 in Esophageal Squamous Cell Carcinoma. Thescientificworldjournal. 2015: 325721. PMID 26788548 DOI: 10.1155/2015/325721  0.72
2015 Kim MS, Zhong J, Pandey A. Common errors in mass spectrometry-based analysis of post-translational modifications. Proteomics. PMID 26667783 DOI: 10.1002/pmic.201500355  0.72
2015 Yelamanchi SD, Jayaram S, Thomas JK, Gundimeda S, Khan AA, Singhal A, Keshava Prasad TS, Pandey A, Somani BL, Gowda H. A pathway map of glutamate metabolism. Journal of Cell Communication and Signaling. PMID 26635200 DOI: 10.1007/s12079-015-0315-5  0.72
2015 Baras AS, Mitchell CJ, Myers JR, Gupta S, Weng LC, Ashton JM, Cornish TC, Pandey A, Halushka MK. miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy. Plos One. 10: e0143066. PMID 26571139 DOI: 10.1371/journal.pone.0143066  0.72
2015 Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, ... ... Pandey A, et al. A multi-omic analysis of human naïve CD4+ T cells. Bmc Systems Biology. 9: 75. PMID 26542228 DOI: 10.1186/s12918-015-0225-4  0.72
2015 Subbannayya T, Leal-Rojas P, Barbhuiya MA, Raja R, Renuse S, Sathe G, Pinto SM, Syed N, Nanjappa V, Patil AH, Garcia P, Sahasrabuddhe NA, Nair B, Guerrero-Preston R, Navani S, ... ... Pandey A, et al. Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer. Bmc Cancer. 15: 843. PMID 26530123 DOI: 10.1186/s12885-015-1855-z  0.72
2015 Beachley VZ, Wolf MT, Sadtler K, Manda SS, Jacobs H, Blatchley MR, Bader JS, Pandey A, Pardoll D, Elisseeff JH. Tissue matrix arrays for high-throughput screening and systems analysis of cell function. Nature Methods. PMID 26480475 DOI: 10.1038/nmeth.3619  0.72
2015 Nanjappa V, Renuse S, Sathe GJ, Raja R, Syed N, Radhakrishnan A, Subbannayya T, Patil A, Marimuthu A, Sahasrabuddhe NA, Guerrero-Preston R, Somani BL, Nair B, Kundu GC, Prasad TS, ... ... Pandey A, et al. Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes. Cancer Biology & Therapy. 0. PMID 26391970 DOI: 10.1080/15384047.2015.1078022  0.72
2015 Wu X, Zahari MS, Ma B, Liu R, Renuse S, Sahasrabuddhe NA, Chen L, Chaerkady R, Kim MS, Zhong J, Jelinek C, Barbhuiya MA, Leal-Rojas P, Yang Y, Kashyap MK, ... ... Pandey A, et al. Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways. Oncotarget. PMID 26356563 DOI: 10.18632/oncotarget.5020  0.72
2015 Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A. Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer. Molecular & Cellular Proteomics : McP. 14: 2887-900. PMID 26330541 DOI: 10.1074/mcp.M115.050484  0.72
2015 Zahari MS, Wu X, Blair BG, Pinto SM, Nirujogi RS, Jelinek CA, Malhotra R, Kim MS, Park BH, Pandey A. Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome. Journal of Proteome Research. PMID 26267517 DOI: 10.1021/acs.jproteome.5b00302  0.72
2015 Ewing AD, Gacita A, Wood LD, Ma F, Xing D, Kim MS, Manda SS, Abril G, Pereira G, Makohon-Moore A, Looijenga LH, Gillis AJ, Hruban RH, Anders RA, Romans KE, ... Pandey A, et al. Widespread somatic L1 retrotransposition occurs early during gastrointestinal cancer evolution. Genome Research. PMID 26260970 DOI: 10.1101/gr.196238.115  0.72
2015 Verma R, Balakrishnan L, Sharma K, Khan AA, Advani J, Gowda H, Tripathy SP, Suar M, Pandey A, Gandotra S, Prasad TS, Shankar S. A network map of Interleukin-10 signaling pathway. Journal of Cell Communication and Signaling. PMID 26253919 DOI: 10.1007/s12079-015-0302-x  0.72
2015 Yu Y, Gaillard S, Phillip JM, Huang TC, Pinto SM, Tessarollo NG, Zhang Z, Pandey A, Wirtz D, Ayhan A, Davidson B, Wang TL, Shih IeM. Inhibition of Spleen Tyrosine Kinase Potentiates Paclitaxel-Induced Cytotoxicity in Ovarian Cancer Cells by Stabilizing Microtubules. Cancer Cell. 28: 82-96. PMID 26096845 DOI: 10.1016/j.ccell.2015.05.009  0.72
2015 Sharma J, Balakrishnan L, Datta KK, Sahasrabuddhe NA, Khan AA, Sahu A, Singhal A, Getnet D, Raju R, Chatterjee A, Gowda H, Keshava Prasad TS, Shankar S, Pandey A. A knowledgebase resource for interleukin-17 family mediated signaling. Journal of Cell Communication and Signaling. PMID 26077014 DOI: 10.1007/s12079-015-0297-3  0.72
2015 Sahasrabuddhe NA, Huang TC, Kumar P, Yang Y, Ghosh B, Leach SD, Chaerkady R, Pandey A. Ablation of Dicer leads to widespread perturbation of signaling pathways. Biochemical and Biophysical Research Communications. 463: 389-94. PMID 26032504 DOI: 10.1016/j.bbrc.2015.05.077  0.72
2015 Mir SA, Rajagopalan P, Jain AP, Khan AA, Datta KK, Mohan SV, Lateef SS, Sahasrabuddhe N, Somani BL, Keshava Prasad TS, Chatterjee A, Veerendra Kumar KV, VijayaKumar M, Kumar RV, Gundimeda S, ... Pandey A, et al. LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma. Journal of Proteomics. PMID 25982385 DOI: 10.1016/j.jprot.2015.05.013  0.72
2015 Subbannayya Y, Mir SA, Renuse S, Manda SS, Pinto SM, Puttamallesh VN, Solanki HS, Manju HC, Syed N, Sharma R, Christopher R, Vijayakumar M, Veerendra Kumar KV, Keshava Prasad TS, Ramaswamy G, ... ... Pandey A, et al. Identification of differentially expressed serum proteins in gastric adenocarcinoma. Journal of Proteomics. PMID 25952687 DOI: 10.1016/j.jprot.2015.04.021  0.72
2015 Murthy KR, Rajagopalan P, Pinto SM, Advani J, Murthy PR, Goel R, Subbannayya Y, Balakrishnan L, Dash M, Anil AK, Manda SS, Nirujogi RS, Kelkar DS, Sathe GJ, Dey G, ... ... Pandey A, et al. Proteomics of human aqueous humor. Omics : a Journal of Integrative Biology. 19: 283-93. PMID 25933257 DOI: 10.1089/omi.2015.0029  0.72
2015 Sharma R, Gowda H, Chavan S, Advani J, Kelkar D, Kumar GS, Bhattacharjee M, Chaerkady R, Prasad TS, Pandey A, Nagaraja D, Christopher R. Proteomic Signature of Endothelial Dysfunction Identified in the Serum of Acute Ischemic Stroke Patients by the iTRAQ-Based LC-MS Approach. Journal of Proteome Research. 14: 2466-79. PMID 25807139 DOI: 10.1021/pr501324n  0.72
2015 Subbannayya Y, Syed N, Barbhuiya MA, Raja R, Marimuthu A, Sahasrabuddhe N, Pinto SM, Manda SS, Renuse S, Manju HC, Zameer MA, Sharma J, Brait M, Srikumar K, Roa JC, ... ... Pandey A, et al. Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology & Therapy. 16: 336-45. PMID 25756516 DOI: 10.4161/15384047.2014.972264  0.72
2015 Jamdhade MD, Pawar H, Chavan S, Sathe G, Umasankar PK, Mahale KN, Dixit T, Madugundu AK, Prasad TS, Gowda H, Pandey A, Patole MS. Comprehensive proteomics analysis of glycosomes from Leishmania donovani. Omics : a Journal of Integrative Biology. 19: 157-70. PMID 25748437 DOI: 10.1089/omi.2014.0163  0.72
2015 Pandey A, Moran MF. Signal transduction. Proteomics. 15: 179-82. PMID 25588725 DOI: 10.1002/pmic.201570023  0.72
2015 Maras JS, Maiwall R, Harsha HC, Das S, Hussain MS, Kumar C, Bihari C, Rastogi A, Kumar M, Trehanpati N, Sharma S, Pandey A, Sarin SK. Dysregulated iron homeostasis is strongly associated with multiorgan failure and early mortality in acute-on-chronic liver failure. Hepatology (Baltimore, Md.). 61: 1306-20. PMID 25475192 DOI: 10.1002/hep.27636  0.72
2015 Zhang X, Belkina N, Jacob HK, Maity T, Biswas R, Venugopalan A, Shaw PG, Kim MS, Chaerkady R, Pandey A, Guha U. Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics. Proteomics. 15: 340-55. PMID 25404012 DOI: 10.1002/pmic.201400315  0.72
2015 Nirujogi RS, Wright JD, Manda SS, Zhong J, Na CH, Meyerhoff J, Benton B, Jabbour R, Willis K, Kim MS, Pandey A, Sekowski JW. Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats. Proteomics. 15: 487-99. PMID 25403869 DOI: 10.1002/pmic.201400371  0.72
2015 Ambekar AS, Kelkar DS, Pinto SM, Sharma R, Hinduja I, Zaveri K, Pandey A, Prasad TS, Gowda H, Mukherjee S. Proteomics of follicular fluid from women with polycystic ovary syndrome suggests molecular defects in follicular development. The Journal of Clinical Endocrinology and Metabolism. 100: 744-53. PMID 25393639 DOI: 10.1210/jc.2014-2086  0.72
2015 Blair BG, Wu X, Zahari MS, Mohseni M, Cidado J, Wong HY, Beaver JA, Cochran RL, Zabransky DJ, Croessmann S, Chu D, Toro PV, Cravero K, Pandey A, Park BH. A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations. Proteomics. 15: 318-26. PMID 25367220 DOI: 10.1002/pmic.201400342  0.72
2015 Pinto SM, Nirujogi RS, Rojas PL, Patil AH, Manda SS, Subbannayya Y, Roa JC, Chatterjee A, Prasad TS, Pandey A. Quantitative phosphoproteomic analysis of IL-33-mediated signaling. Proteomics. 15: 532-44. PMID 25367039 DOI: 10.1002/pmic.201400303  0.72
2015 Syed N, Barbhuiya MA, Pinto SM, Nirujogi RS, Renuse S, Datta KK, Khan AA, Srikumar K, Prasad TS, Kumar MV, Kumar RV, Chatterjee A, Pandey A, Gowda H. Phosphotyrosine profiling identifies ephrin receptor A2 as a potential therapeutic target in esophageal squamous-cell carcinoma. Proteomics. 15: 374-82. PMID 25366905 DOI: 10.1002/pmic.201400379  0.72
2015 Huang TC, Renuse S, Pinto S, Kumar P, Yang Y, Chaerkady R, Godsey B, Mendell JT, Halushka MK, Civin CI, Marchionni L, Pandey A. Identification of miR-145 targets through an integrated omics analysis. Molecular Biosystems. 11: 197-207. PMID 25354783 DOI: 10.1039/c4mb00585f  0.72
2015 Syed N, Chavan S, Sahasrabuddhe NA, Renuse S, Sathe G, Nanjappa V, Radhakrishnan A, Raja R, Pinto SM, Srinivasan A, Prasad TS, Srikumar K, Gowda H, Santosh V, Sidransky D, ... ... Pandey A, et al. Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma. Proteomics. 15: 383-93. PMID 25327479 DOI: 10.1002/pmic.201400338  0.72
2015 Zhong J, Martinez M, Sengupta S, Lee A, Wu X, Chaerkady R, Chatterjee A, O'Meally RN, Cole RN, Pandey A, Zachara NE. Quantitative phosphoproteomics reveals crosstalk between phosphorylation and O-GlcNAc in the DNA damage response pathway. Proteomics. 15: 591-607. PMID 25263469 DOI: 10.1002/pmic.201400339  0.72
2015 Huang TC, Cutler J, Bharne S, Zhong J, Weinstock D, Tyner J, Gojo I, Civin C, Pandey A. Integrated analysis of CRLF2 signaling in acute lymphoblastic leukemia identifies Polo-like kinase 1 as a potential therapeutic target. Leukemia & Lymphoma. 56: 1524-7. PMID 25213184 DOI: 10.3109/10428194.2014.963076  0.72
2015 Kagohara LT, Schussel JL, Subbannayya T, Sahasrabuddhe N, Lebron C, Brait M, Maldonado L, Valle BL, Pirini F, Jahuira M, Lopez J, Letelier P, Brebi-Mieville P, Ili C, Pandey A, et al. Global and gene-specific DNA methylation pattern discriminates cholecystitis from gallbladder cancer patients in Chile. Future Oncology (London, England). 11: 233-49. PMID 25066711 DOI: 10.2217/fon.14.165  0.72
2015 Zahari MS, Wu X, Pinto SM, Nirujogi RS, Kim MS, Fetics B, Philip M, Barnes SR, Godfrey B, Gabrielson E, Nevo E, Pandey A. Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia Scientific Reports. 5. DOI: 10.1038/srep13660  0.72
2014 Heydarian M, Luperchio TR, Cutler J, Mitchell CJ, Kim MS, Pandey A, Sollner-Webb B, Reddy K. Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis. Journal of Proteomics & Bioinformatics. 7. PMID 25544807 DOI: 10.4172/jpb.1000302  0.72
2014 Wu X, Zahari MS, Renuse S, Jacob HK, Sakamuri S, Singal M, Gabrielson E, Sukumar S, Pandey A. A breast cancer cell microarray (CMA) as a rapid method to characterize candidate biomarkers. Cancer Biology & Therapy. 15: 1593-9. PMID 25535895 DOI: 10.4161/15384047.2014.961886  0.72
2014 Sahu A, Kumar S, Sreenivasamurthy SK, Selvan LD, Madugundu AK, Yelamanchi SD, Puttamallesh VN, Dey G, Anil AK, Srinivasan A, Mukherjee KK, Gowda H, Satishchandra P, Mahadevan A, Pandey A, et al. Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. Clinical Proteomics. 11: 39. PMID 25404878 DOI: 10.1186/1559-0275-11-39  0.72
2014 Renuse S, Madugundu AK, Kumar P, Nair BG, Gowda H, Prasad TS, Pandey A. Proteomic analysis and genome annotation of Pichia pastoris, a recombinant protein expression host. Proteomics. 14: 2769-79. PMID 25346215 DOI: 10.1002/pmic.201400267  0.72
2014 Wu X, Renuse S, Sahasrabuddhe NA, Zahari MS, Chaerkady R, Kim MS, Nirujogi RS, Mohseni M, Kumar P, Raju R, Zhong J, Yang J, Neiswinger J, Jeong JS, Newman R, ... ... Pandey A, et al. Activation of diverse signalling pathways by oncogenic PIK3CA mutations. Nature Communications. 5: 4961. PMID 25247763 DOI: 10.1038/ncomms5961  0.72
2014 Murthy KR, Goel R, Subbannayya Y, Jacob HK, Murthy PR, Manda SS, Patil AH, Sharma R, Sahasrabuddhe NA, Parashar A, Nair BG, Krishna V, Prasad TsK, Gowda H, Pandey A. Proteomic analysis of human vitreous humor. Clinical Proteomics. 11: 29. PMID 25097467 DOI: 10.1186/1559-0275-11-29  0.72
2014 Luo W, Lin B, Wang Y, Zhong J, O'Meally R, Cole RN, Pandey A, Levchenko A, Semenza GL. PHD3-mediated prolyl hydroxylation of nonmuscle actin impairs polymerization and cell motility. Molecular Biology of the Cell. 25: 2788-96. PMID 25079693 DOI: 10.1091/mbc.E14-02-0775  0.72
2014 Tong Z, Kim MS, Pandey A, Espenshade PJ. Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative diGly proteomics in yeast. Molecular & Cellular Proteomics : McP. 13: 2871-82. PMID 25078903 DOI: 10.1074/mcp.M114.040774  0.72
2014 Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, ... ... Pandey A, et al. Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Molecular & Cellular Proteomics : McP. 13: 3184-98. PMID 25060758 DOI: 10.1074/mcp.M114.038299  0.72
2014 Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, et al. Proteogenomic characterization of human colon and rectal cancer. Nature. 513: 382-7. PMID 25043054 DOI: 10.1038/nature13438  0.72
2014 Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H. Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project. Journal of Proteome Research. 13: 3166-77. PMID 24960282 DOI: 10.1021/pr401123v  0.72
2014 Pawar H, Renuse S, Khobragade SN, Chavan S, Sathe G, Kumar P, Mahale KN, Gore K, Kulkarni A, Dixit T, Raju R, Prasad TS, Harsha HC, Patole MS, Pandey A. Neglected tropical diseases and omics science: proteogenomics analysis of the promastigote stage of Leishmania major parasite. Omics : a Journal of Integrative Biology. 18: 499-512. PMID 24937402 DOI: 10.1089/omi.2013.0159  0.72
2014 Dwivedi SB, Muthusamy B, Kumar P, Kim MS, Nirujogi RS, Getnet D, Ahiakonu P, De G, Nair B, Gowda H, Prasad TS, Kumar N, Pandey A, Okulate M. Brain proteomics of Anopheles gambiae. Omics : a Journal of Integrative Biology. 18: 421-37. PMID 24937107 DOI: 10.1089/omi.2014.0007  0.72
2014 Kim MS, Zhong Y, Yachida S, Rajeshkumar NV, Abel ML, Marimuthu A, Mudgal K, Hruban RH, Poling JS, Tyner JW, Maitra A, Iacobuzio-Donahue CA, Pandey A. Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics. Molecular & Cellular Proteomics : McP. 13: 2803-11. PMID 24895378 DOI: 10.1074/mcp.M114.038547  0.72
2014 Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, ... ... Pandey A, et al. A draft map of the human proteome. Nature. 509: 575-81. PMID 24870542 DOI: 10.1038/nature13302  0.72
2014 Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, ... ... Pandey A, et al. Pancreatic Cancer Database: an integrative resource for pancreatic cancer. Cancer Biology & Therapy. 15: 963-7. PMID 24839966 DOI: 10.4161/cbt.29188  0.72
2014 Chaiyarit S, Singhto N, Chen YJ, Cheng CY, Chiangjong W, Kanlaya R, Lam HH, Peerapen P, Sung TY, Tipthara P, Pandey A, Poon TC, Chen YJ, Sirdeshmukh R, Chung MC, et al. Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12. Journal of Proteome Research. 13: 3160-5. PMID 24831074 DOI: 10.1021/pr500009j  0.72
2014 Gupta MK, Jayaram S, Madugundu AK, Chavan S, Advani J, Pandey A, Thongboonkerd V, Sirdeshmukh R. Chromosome-centric human proteome project: deciphering proteins associated with glioma and neurodegenerative disorders on chromosome 12. Journal of Proteome Research. 13: 3178-90. PMID 24804578 DOI: 10.1021/pr500023p  0.72
2014 Sahasrabuddhe NA, Huang TC, Ahmad S, Kim MS, Yang Y, Ghosh B, Leach SD, Gowda H, Somani BL, Chaerkady R, Pandey A. Regulation of PPAR-alpha pathway by Dicer revealed through proteomic analysis. Journal of Proteomics. 108: 306-15. PMID 24769236 DOI: 10.1016/j.jprot.2014.04.027  0.72
2014 Chi Z, Byrne ST, Dolinko A, Harraz MM, Kim MS, Umanah G, Zhong J, Chen R, Zhang J, Xu J, Chen L, Pandey A, Dawson TM, Dawson VL. Botch is a γ-glutamyl cyclotransferase that deglycinates and antagonizes Notch. Cell Reports. 7: 681-8. PMID 24767995 DOI: 10.1016/j.celrep.2014.03.048  0.72
2014 Martin I, Kim JW, Lee BD, Kang HC, Xu JC, Jia H, Stankowski J, Kim MS, Zhong J, Kumar M, Andrabi SA, Xiong Y, Dickson DW, Wszolek ZK, Pandey A, et al. Ribosomal protein s15 phosphorylation mediates LRRK2 neurodegeneration in Parkinson's disease. Cell. 157: 472-85. PMID 24725412 DOI: 10.1016/j.cell.2014.01.064  0.72
2014 Pinto SM, Manda SS, Kim MS, Taylor K, Selvan LD, Balakrishnan L, Subbannayya T, Yan F, Prasad TS, Gowda H, Lee C, Hancock WS, Pandey A. Functional annotation of proteome encoded by human chromosome 22. Journal of Proteome Research. 13: 2749-60. PMID 24669763 DOI: 10.1021/pr401169d  0.72
2014 Sahasrabuddhe NA, Barbhuiya MA, Bhunia S, Subbannayya T, Gowda H, Advani J, Shrivastav BR, Navani S, Leal P, Roa JC, Chaerkady R, Gupta S, Chatterjee A, Pandey A, Tiwari PK. Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics. Biochemical and Biophysical Research Communications. 446: 863-9. PMID 24657443 DOI: 10.1016/j.bbrc.2014.03.017  0.72
2014 Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J. C9orf72 nucleotide repeat structures initiate molecular cascades of disease. Nature. 507: 195-200. PMID 24598541 DOI: 10.1038/nature13124  0.72
2014 Subbannayya Y, Anuja K, Advani J, Ojha UK, Nanjappa V, George B, Sonawane A, Kumar RV, Ramaswamy G, Pandey A, Somani BL, Raju R. A network map of the gastrin signaling pathway. Journal of Cell Communication and Signaling. 8: 165-70. PMID 24584707 DOI: 10.1007/s12079-014-0224-z  0.72
2014 Zhong J, Sharma J, Raju R, Palapetta SM, Prasad TS, Huang TC, Yoda A, Tyner JW, van Bodegom D, Weinstock DM, Ziegler SF, Pandey A. TSLP signaling pathway map: a platform for analysis of TSLP-mediated signaling. Database : the Journal of Biological Databases and Curation. 2014: bau007. PMID 24573880 DOI: 10.1093/database/bau007  0.72
2014 Balakrishnan L, Nirujogi RS, Ahmad S, Bhattacharjee M, Manda SS, Renuse S, Kelkar DS, Subbannayya Y, Raju R, Goel R, Thomas JK, Kaur N, Dhillon M, Tankala SG, Jois R, ... ... Pandey A, et al. Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11: 6. PMID 24533825 DOI: 10.1186/1559-0275-11-6  0.72
2014 Nagarajha Selvan LD, Kaviyil JE, Nirujogi RS, Muthusamy B, Puttamallesh VN, Subbannayya T, Syed N, Radhakrishnan A, Kelkar DS, Ahmad S, Pinto SM, Kumar P, Madugundu AK, Nair B, Chatterjee A, ... Pandey A, et al. Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry. Clinical Proteomics. 11: 5. PMID 24484775 DOI: 10.1186/1559-0275-11-5  0.72
2014 Vega-Rodríguez J, Ghosh AK, Kanzok SM, Dinglasan RR, Wang S, Bongio NJ, Kalume DE, Miura K, Long CA, Pandey A, Jacobs-Lorena M. Multiple pathways for Plasmodium ookinete invasion of the mosquito midgut. Proceedings of the National Academy of Sciences of the United States of America. 111: E492-500. PMID 24474798 DOI: 10.1073/pnas.1315517111  0.72
2014 Balakrishnan L, Bhattacharjee M, Ahmad S, Nirujogi RS, Renuse S, Subbannayya Y, Marimuthu A, Srikanth SM, Raju R, Dhillon M, Kaur N, Jois R, Vasudev V, Ramachandra Y, Sahasrabuddhe NA, ... ... Pandey A, et al. Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients. Clinical Proteomics. 11: 1. PMID 24393543 DOI: 10.1186/1559-0275-11-1  0.72
2014 Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, ... ... Pandey A, et al. Plasma Proteome Database as a resource for proteomics research: 2014 update. Nucleic Acids Research. 42: D959-65. PMID 24304897 DOI: 10.1093/nar/gkt1251  0.72
2014 Ahn JM, Kim MS, Kim YI, Jeong SK, Lee HJ, Lee SH, Paik YK, Pandey A, Cho JY. Proteogenomic analysis of human chromosome 9-encoded genes from human samples and lung cancer tissues. Journal of Proteome Research. 13: 137-46. PMID 24274035 DOI: 10.1021/pr400792p  0.72
2014 Kleensang A, Maertens A, Rosenberg M, Fitzpatrick S, Lamb J, Auerbach S, Brennan R, Crofton KM, Gordon B, Fornace AJ, Gaido K, Gerhold D, Haw R, Henney A, Ma'ayan A, ... ... Pandey A, et al. t4 workshop report: Pathways of Toxicity. Altex. 31: 53-61. PMID 24127042 DOI: 10.14573/altex.1309261  0.72
2014 Selvan LD, Renuse S, Kaviyil JE, Sharma J, Pinto SM, Yelamanchi SD, Puttamallesh VN, Ravikumar R, Pandey A, Prasad TS, Harsha HC. Phosphoproteome of Cryptococcus neoformans. Journal of Proteomics. 97: 287-95. PMID 23851311 DOI: 10.1016/j.jprot.2013.06.029  0.72
2014 Nirujogi RS, Pawar H, Renuse S, Kumar P, Chavan S, Sathe G, Sharma J, Khobragade S, Pande J, Modak B, Prasad TS, Harsha HC, Patole MS, Pandey A. Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani. Journal of Proteomics. 97: 48-61. PMID 23665000 DOI: 10.1016/j.jprot.2013.04.021  0.72
2014 Marimuthu A, Huang TC, Selvan LDN, Renuse S, Nirujogi RS, Kumar P, Pinto SM, Rajagopalan S, Pandey A, Harsha HC, Chatterjee A. Identification of targets of miR-200b by a SILAC-based quantitative proteomic approach Eupa Open Proteomics. 4: 10-17. DOI: 10.1016/j.euprot.2014.04.006  0.72
2013 Puttamallesh VN, Sreenivasamurthy SK, Singh PK, Harsha HC, Ganjiwale A, Broor S, Pandey A, Narayana J, Prasad TS. Proteomic profiling of serum samples from chikungunya-infected patients provides insights into host response. Clinical Proteomics. 10: 14. PMID 24124767 DOI: 10.1186/1559-0275-10-14  0.72
2013 Shaw PG, Chaerkady R, Wang T, Vasilatos S, Huang Y, Van Houten B, Pandey A, Davidson NE. Integrated proteomic and metabolic analysis of breast cancer progression. Plos One. 8: e76220. PMID 24086712 DOI: 10.1371/journal.pone.0076220  0.72
2013 Taylor MS, Ruch TR, Hsiao PY, Hwang Y, Zhang P, Dai L, Huang CR, Berndsen CE, Kim MS, Pandey A, Wolberger C, Marmorstein R, Machamer C, Boeke JD, Cole PA. Architectural organization of the metabolic regulatory enzyme ghrelin O-acyltransferase. The Journal of Biological Chemistry. 288: 32211-28. PMID 24045953 DOI: 10.1074/jbc.M113.510313  0.72
2013 Bhattacharjee M, Sharma R, Goel R, Balakrishnan L, Renuse S, Advani J, Gupta ST, Verma R, Pinto SM, Sekhar NR, Nair B, Prasad TS, Harsha HC, Jois R, Shankar S, ... Pandey A, et al. A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy. Clinical Proteomics. 10: 11. PMID 24010407 DOI: 10.1186/1559-0275-10-11  0.72
2013 Goel R, Murthy KR, Srikanth SM, Pinto SM, Bhattacharjee M, Kelkar DS, Madugundu AK, Dey G, Mohan SS, Krishna V, Prasad TsK, Chakravarti S, Harsha H, Pandey A. Characterizing the normal proteome of human ciliary body. Clinical Proteomics. 10: 9. PMID 23914977 DOI: 10.1186/1559-0275-10-9  0.72
2013 Prasad TS, Verma R, Kumar S, Nirujogi RS, Sathe GJ, Madugundu AK, Sharma J, Puttamallesh VN, Ganjiwale A, Myneedu VP, Chatterjee A, Pandey A, Harsha H, Narayana J. Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis. Clinical Proteomics. 10: 8. PMID 23870090 DOI: 10.1186/1559-0275-10-8  0.72
2013 Sreenivasamurthy SK, Dey G, Ramu M, Kumar M, Gupta MK, Mohanty AK, Harsha HC, Sharma P, Kumar N, Pandey A, Kumar A, Prasad TS. A compendium of molecules involved in vector-pathogen interactions pertaining to malaria. Malaria Journal. 12: 216. PMID 23802619 DOI: 10.1186/1475-2875-12-216  0.72
2013 Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A. The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence. Plos Pathogens. 9: e1003403. PMID 23785281 DOI: 10.1371/journal.ppat.1003403  0.72
2013 Polisetty RV, Gautam P, Gupta MK, Sharma R, Uppin MS, Challa S, Ankathi P, Purohit AK, Renu D, Harsha HC, Pandey A, Sirdeshmukh R. Heterogeneous nuclear ribonucleoproteins and their interactors are a major class of deregulated proteins in anaplastic astrocytoma: a grade III malignant glioma. Journal of Proteome Research. 12: 3128-38. PMID 23741984 DOI: 10.1021/pr400339h  0.72
2013 Chaerkady R, Shao H, Scott SG, Pandey A, Jun AS, Chakravarti S. The keratoconus corneal proteome: loss of epithelial integrity and stromal degeneration. Journal of Proteomics. 87: 122-31. PMID 23727491 DOI: 10.1016/j.jprot.2013.05.023  0.72
2013 Ambekar AS, Nirujogi RS, Srikanth SM, Chavan S, Kelkar DS, Hinduja I, Zaveri K, Prasad TS, Harsha HC, Pandey A, Mukherjee S. Proteomic analysis of human follicular fluid: a new perspective towards understanding folliculogenesis. Journal of Proteomics. 87: 68-77. PMID 23707233 DOI: 10.1016/j.jprot.2013.05.017  0.72
2013 Harsha HC, Pinto SM, Pandey A. Proteomic strategies to characterize signaling pathways. Methods in Molecular Biology (Clifton, N.J.). 1007: 359-77. PMID 23666735 DOI: 10.1007/978-1-62703-392-3_16  0.72
2013 Marimuthu A, Chavan S, Sathe G, Sahasrabuddhe NA, Srikanth SM, Renuse S, Ahmad S, Radhakrishnan A, Barbhuiya MA, Kumar RV, Harsha HC, Sidransky D, Califano J, Pandey A, Chatterjee A. Identification of head and neck squamous cell carcinoma biomarker candidates through proteomic analysis of cancer cell secretome. Biochimica Et Biophysica Acta. 1834: 2308-16. PMID 23665456 DOI: 10.1016/j.bbapap.2013.04.029  0.72
2013 Patel K, Scrimieri F, Ghosh S, Zhong J, Kim MS, Ren YR, Morgan RA, Iacobuzio-Donahue CA, Pandey A, Kern SE. FAM190A deficiency creates a cell division defect. The American Journal of Pathology. 183: 296-303. PMID 23665203 DOI: 10.1016/j.ajpath.2013.03.020  0.72
2013 Balakrishnan L, Soman S, Patil YB, Advani J, Thomas JK, Desai DV, Kulkarni-Kale U, Harsha HC, Prasad TS, Raju R, Pandey A, Dimitriadis E, Chatterjee A. IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication & Adhesion. 20: 81-6. PMID 23631681 DOI: 10.3109/15419061.2013.791683  0.72
2013 Sandhya VK, Raju R, Verma R, Advani J, Sharma R, Radhakrishnan A, Nanjappa V, Narayana J, Somani BL, Mukherjee KK, Pandey A, Christopher R, Prasad TS. A network map of BDNF/TRKB and BDNF/p75NTR signaling system. Journal of Cell Communication and Signaling. 7: 301-7. PMID 23606317 DOI: 10.1007/s12079-013-0200-z  0.72
2013 Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, ... ... Pandey A, et al. Construction of human activity-based phosphorylation networks. Molecular Systems Biology. 9: 655. PMID 23549483 DOI: 10.1038/msb.2013.12  0.72
2013 Venugopal AK, Ghantasala SS, Selvan LD, Mahadevan A, Renuse S, Kumar P, Pawar H, Sahasrabhuddhe NA, Suja MS, Ramachandra YL, Prasad TS, Madhusudhana SN, Hc H, Chaerkady R, Satishchandra P, ... Pandey A, et al. Quantitative proteomics for identifying biomarkers for Rabies. Clinical Proteomics. 10: 3. PMID 23521751 DOI: 10.1186/1559-0275-10-3  0.72
2013 Muthusamy B, Thomas JK, Prasad TS, Pandey A. Access guide to human proteinpedia. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 1.21. PMID 23504933 DOI: 10.1002/0471250953.bi0121s41  0.72
2013 Dey G, Radhakrishnan A, Syed N, Thomas JK, Nadig A, Srikumar K, Mathur PP, Pandey A, Lin SK, Raju R, Prasad TS. Signaling network of Oncostatin M pathway. Journal of Cell Communication and Signaling. 7: 103-8. PMID 23255051 DOI: 10.1007/s12079-012-0186-y  0.72
2013 Marimuthu A, Subbannayya Y, Sahasrabuddhe NA, Balakrishnan L, Syed N, Sekhar NR, Katte TV, Pinto SM, Srikanth SM, Kumar P, Pawar H, Kashyap MK, Maharudraiah J, Ashktorab H, Smoot DT, ... ... Pandey A, et al. SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics. Clinical Applications. 7: 355-66. PMID 23161554 DOI: 10.1002/prca.201200069  0.72
2013 Soman S, Raju R, Sandhya VK, Advani J, Khan AA, Harsha HC, Prasad TS, Sudhakaran PR, Pandey A, Adishesha PK. A multicellular signal transduction network of AGE/RAGE signaling. Journal of Cell Communication and Signaling. 7: 19-23. PMID 23161412 DOI: 10.1007/s12079-012-0181-3  0.72
2013 Huang TC, Pinto SM, Pandey A. Proteomics for understanding miRNA biology. Proteomics. 13: 558-67. PMID 23125164 DOI: 10.1002/pmic.201200339  0.72
2013 Pawar H, Maharudraiah J, Kashyap MK, Sharma J, Srikanth SM, Choudhary R, Chavan S, Sathe G, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Harsha HC, Prasad TS, Pandey A, et al. Downregulation of cornulin in esophageal squamous cell carcinoma. Acta Histochemica. 115: 89-99. PMID 22560086 DOI: 10.1016/j.acthis.2012.04.003  0.72
2012 Kalra H, Simpson RJ, Ji H, Aikawa E, Altevogt P, Askenase P, Bond VC, Borràs FE, Breakefield X, Budnik V, Buzas E, Camussi G, Clayton A, Cocucci E, Falcon-Perez JM, ... ... Pandey A, et al. Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. Plos Biology. 10: e1001450. PMID 23271954 DOI: 10.1371/journal.pbio.1001450  0.72
2012 Bhandari R, Saiardi A, Ahmadibeni Y, Snowman AM, Resnick AC, Kristiansen TZ, Molina H, Pandey A, Werner JK, Juluri KR, Xu Y, Prestwich GD, Parang K, Snyder SH. Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event (Proceedings of the National Academy of Sciences of the United States of America (2007) 104, 39, (15305-15310) DOI: 10.1073/pnas. 0707338104) Proceedings of the National Academy of Sciences of the United States of America. 109: 21171-21173. DOI: 10.1073/pnas.1218152109  0.72
2011 Zachara NE, Molina H, Wong KY, Pandey A, Hart GW. The dynamic stress-induced "O-GlcNAc-ome" highlights functions for O-GlcNAc in regulating DNA damage/repair and other cellular pathways. Amino Acids. 40: 793-808. PMID 20676906 DOI: 10.1007/s00726-010-0695-z  0.72
2010 Kashyap MK, Marimuthu A, Peri S, Kumar GS, Jacob HK, Prasad TS, Mahmood R, Kumar KV, Kumar MV, Meltzer SJ, Montgomery EA, Kumar RV, Pandey A. Overexpression of periostin and lumican in esophageal squamous cell carcinoma. Cancers. 2: 133-42. PMID 24281036 DOI: 10.3390/cancers2010133  0.72
2010 Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Pandey A, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/gb-2010-11-1-r3  0.72
2009 Kandasamy K, Pandey A, Molina H. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments Analytical Chemistry. 81: 7170-7180. PMID 19639959 DOI: 10.1021/ac9006107  0.72
2009 Amanchy R, Zhong J, Hong R, Kim JH, Gucek M, Cole RN, Molina H, Pandey A. Identification of c-Src tyrosine kinase substrates in platelet-derived growth factor receptor signaling. Molecular Oncology. 3: 439-50. PMID 19632164 DOI: 10.1016/j.molonc.2009.07.001  0.36
2009 Li X, Molina H, Huang H, Zhang YY, Liu M, Qian SW, Slawson C, Dias WB, Pandey A, Hart GW, Lane MD, Tang QQ. O-linked N-acetylglucosamine modification on CCAAT enhancer-binding protein beta: role during adipocyte differentiation. The Journal of Biological Chemistry. 284: 19248-54. PMID 19478079 DOI: 10.1074/jbc.M109.005678  0.72
2009 Harsha HC, Kandasamy K, Ranganathan P, Rani S, Ramabadran S, Gollapudi S, Balakrishnan L, Dwivedi SB, Telikicherla D, Selvan LD, Goel R, Mathivanan S, Marimuthu A, Kashyap M, Vizza RF, ... ... Pandey A, et al. A compendium of potential biomarkers of pancreatic cancer. Plos Medicine. 6: e1000046. PMID 19360088 DOI: 10.1371/journal.pmed.1000046  0.72
2009 Kashyap MK, Marimuthu A, Kishore CJ, Peri S, Keerthikumar S, Prasad TS, Mahmood R, Rao S, Ranganathan P, Sanjeeviah RC, Vijayakumar M, Kumar KV, Montgomery EA, Kumar RV, Pandey A. Genomewide mRNA profiling of esophageal squamous cell carcinoma for identification of cancer biomarkers. Cancer Biology & Therapy. 8: 36-46. PMID 18981721  0.72
2009 Molina H, Yang Y, Ruch T, Kim JW, Mortensen P, Otto T, Nalli A, Tang QQ, Lane MD, Chaerkady R, Pandey A. Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy. Journal of Proteome Research. 8: 48-58. PMID 18947249 DOI: 10.1021/pr800650r  0.36
2008 Guha U, Chaerkady R, Marimuthu A, Patterson AS, Kashyap MK, Harsha HC, Sato M, Bader JS, Lash AE, Minna JD, Pandey A, Varmus HE. Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS. Proceedings of the National Academy of Sciences of the United States of America. 105: 14112-7. PMID 18776048 DOI: 10.1073/pnas.0806158105  0.72
2008 Sarker R, Grønborg M, Cha B, Mohan S, Chen Y, Pandey A, Litchfield D, Donowitz M, Li X. Casein kinase 2 binds to the C terminus of Na+/H+ exchanger 3 (NHE3) and stimulates NHE3 basal activity by phosphorylating a separate site in NHE3. Molecular Biology of the Cell. 19: 3859-70. PMID 18614797 DOI: 10.1091/mbc.E08-01-0019  0.72
2008 Molina H, Matthiesen R, Kandasamy K, Pandey A. Comprehensive comparison of collision induced dissociation and electron transfer dissociation Analytical Chemistry. 80: 4825-4835. PMID 18540640 DOI: 10.1021/ac8007785  0.72
2008 Harsha HC, Molina H, Pandey A. Quantitative proteomics using stable isotope labeling with amino acids in cell culture Nature Protocols. 3: 505-516. PMID 18323819 DOI: 10.1038/nprot.2008.2  0.72
2008 Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, ... ... Pandey A, et al. Human Proteinpedia enables sharing of human protein data. Nature Biotechnology. 26: 164-7. PMID 18259167 DOI: 10.1038/nbt0208-164  1
2007 Zhong J, Molina H, Pandey A. Phosphoproteomics Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. PMID 18429323 DOI: 10.1002/0471140864.ps2404s50  0.72
2006 Wang D, Kalume D, Pickart C, Pandey A, Cotter RJ. Identification of protein ubiquitylation by electrospray ionization tandem mass spectrometric analysis of sulfonated tryptic peptides Analytical Chemistry. 78: 3681-3687. PMID 16737224 DOI: 10.1021/ac051904b  0.72
2006 Qiao Y, Molina H, Pandey A, Zhang J, Cole PA. Chemical rescue of a mutant enzyme in living cells. Science (New York, N.Y.). 311: 1293-7. PMID 16513984 DOI: 10.1126/science.1122224  0.72
2005 Hyland EM, Cosgrove MS, Molina H, Wang D, Pandey A, Cottee RJ, Boeke JD. Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 10060-70. PMID 16260619 DOI: 10.1128/MCB.25.22.10060-10070.2005  0.72
2005 Molina H, Parmigiani G, Pandey A. Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry Analytical Chemistry. 77: 2739-2744. PMID 15859588 DOI: 10.1021/ac048204b  0.72
2004 Kristiansen TZ, Nielsen MM, Blagoev B, Pandey A, Mann M. Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 285-92. PMID 15500253  1
2004 Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Pandey A, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/nbt926  0.72
2004 Ibarrola N, Molina H, Iwahori A, Pandey A. A Novel Proteomic Approach for Specific Identification of Tyrosine Kinase Substrates Using [13C]Tyrosine Journal of Biological Chemistry. 279: 15805-15813. PMID 14739304 DOI: 10.1074/jbc.M311714200  0.72
2004 Ibarrola N, Kratchmarova I, Nakajima D, Schiemann WP, Moustakas A, Pandey A, Mann M. Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling. Bmc Cell Biology. 5: 2. PMID 14728725 DOI: 10.1186/1471-2121-5-2  0.72
2003 Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, ... ... Pandey A, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research. 13: 2363-71. PMID 14525934 DOI: 10.1101/gr.1680803  0.72
2003 Steen H, Fernandez M, Ghaffari S, Pandey A, Mann M. Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning. Molecular & Cellular Proteomics : McP. 2: 138-45. PMID 12644574 DOI: 10.1074/mcp.M300001-MCP200  1
2003 Kalume DE, Molina H, Pandey A. Tackling the phosphoproteome: Tools and strategies Current Opinion in Chemical Biology. 7: 64-69. PMID 12547428 DOI: 10.1016/S1367-5931(02)00009-1  0.72
2003 Pandey A, Peri S, Thacker C, Whipple CA, Collins JJ, Mann M. Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome. Bioinformatics (Oxford, England). 19: 169-72. PMID 12538235 DOI: 10.1093/bioinformatics/19.2.169  0.72
2002 Andersen JS, Rappsilber J, Steen H, Pandey A, Molina H, Lund M, Podtelejnikov A, Lamond AI, Mann M. Multi-Protein Complexes Studied by Mass Spectrometry. Thescientificworldjournal. 2: 91-92. PMID 29973817 DOI: 10.1100/tsw.2002.43  1
2002 Pandey A, Blagoev B, Kratchmarova I, Fernandez M, Nielsen M, Kristiansen TZ, Ohara O, Podtelejnikov AV, Roche S, Lodish HF, Mann M. Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases. Oncogene. 21: 8029-36. PMID 12439753 DOI: 10.1038/sj.onc.1205988  0.72
2002 Steen H, Pandey A, Andersen JS, Mann M. Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Science's Stke : Signal Transduction Knowledge Environment. 2002: pl16. PMID 12381836 DOI: 10.1126/stke.2002.154.pl16  1
2002 Grønborg M, Kristiansen TZ, Stensballe A, Andersen JS, Ohara O, Mann M, Jensen ON, Pandey A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Molecular & Cellular Proteomics : McP. 1: 517-27. PMID 12239280 DOI: 10.1074/mcp.M200010-MCP200  1
2002 Blagoev B, Kratchmarova I, Nielsen MM, Fernandez MM, Voldby J, Andersen JS, Kristiansen K, Pandey A, Mann M. Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature. The Journal of Biological Chemistry. 277: 42011-6. PMID 12189153 DOI: 10.1074/jbc.M206975200  1
2002 Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics : McP. 1: 376-86. PMID 12118079  1
2002 Kratchmarova I, Kalume DE, Blagoev B, Scherer PE, Podtelejnikov AV, Molina H, Bickel PE, Andersen JS, Fernandez MM, Bunkenborg J, Roepstorff P, Kristiansen K, Lodish HF, Mann M, Pandey A. A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes. Molecular & Cellular Proteomics : McP. 1: 213-22. PMID 12096121 DOI: 10.1074/mcp.M200006-MCP200  0.72
2002 Pandey A, Dan I, Kristiansen TZ, Watanabe NM, Voldby J, Kajikawa E, Khosravi-Far R, Blagoev B, Mann M. Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain. Oncogene. 21: 3939-48. PMID 12032833 DOI: 10.1038/sj.onc.1205478  0.72
2002 Schiemann WP, Blobe GC, Kalume DE, Pandey A, Lodish HF. Context-specific effects of fibulin-5 (DANCE/EVEC) on cell proliferation, motility, and invasion. Fibulin-5 is induced by transforming growth factor-beta and affects protein kinase cascades. The Journal of Biological Chemistry. 277: 27367-77. PMID 12021267 DOI: 10.1074/jbc.M200148200  0.72
2002 Mann M, Ong SE, Grønborg M, Steen H, Jensen ON, Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20: 261-8. PMID 12007495 DOI: 10.1016/S0167-7799(02)01944-3  1
2002 Pandey A, Ibarrola N, Kratchmarova I, Fernandez MM, Constantinescu SN, Ohara O, Sawasdikosol S, Lodish HF, Mann M. A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling. The Journal of Biological Chemistry. 277: 19131-8. PMID 11891219 DOI: 10.1074/jbc.M110318200  0.72
2002 Dan I, Ong SE, Watanabe NM, Blagoev B, Nielsen MM, Kajikawa E, Kristiansen TZ, Mann M, Pandey A. Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties. The Journal of Biological Chemistry. 277: 5929-39. PMID 11741893 DOI: 10.1074/jbc.M110882200  0.72
2002 Steen H, Kuster B, Fernandez M, Pandey A, Mann M. Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. The Journal of Biological Chemistry. 277: 1031-9. PMID 11687594 DOI: 10.1074/jbc.M109992200  1
2001 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A. Common pitfalls in bioinformatics-based analyses: look before you leap. Trends in Genetics : Tig. 17: 541-5. PMID 12078716  0.72
2001 Mann M, Hendrickson RC, Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annual Review of Biochemistry. 70: 437-73. PMID 11395414 DOI: 10.1146/annurev.biochem.70.1.437  0.72
2001 Steen H, Küster B, Fernandez M, Pandey A, Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. Analytical Chemistry. 73: 1440-8. PMID 11321292  1
2001 Mann M, Pandey A. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases. Trends in Biochemical Sciences. 26: 54-61. PMID 11165518  1
2000 Pandey A, Andersen JS, Mann M. Use of mass spectrometry to study signaling pathways. Science's Stke : Signal Transduction Knowledge Environment. 2000: pl1. PMID 11752594 DOI: 10.1126/stke.2000.37.pl1  1
2000 Pandey A, Fernandez MM, Steen H, Blagoev B, Nielsen MM, Roche S, Mann M, Lodish HF. Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways. The Journal of Biological Chemistry. 275: 38633-9. PMID 10993906 DOI: 10.1074/jbc.M007849200  0.72
2000 Pandey A, Ozaki K, Baumann H, Levin SD, Puel A, Farr AG, Ziegler SF, Leonard WJ, Lodish HF. Cloning of a receptor subunit required for signaling by thymic stromal lymphopoietin. Nature Immunology. 1: 59-64. PMID 10881176 DOI: 10.1038/76923  0.72
2000 Pandey A, Mann M. Proteomics to study genes and genomes. Nature. 405: 837-46. PMID 10866210 DOI: 10.1038/35015709  1
2000 Sosinowski T, Pandey A, Dixit VM, Weiss A. Src-like adaptor protein (SLAP) is a negative regulator of T cell receptor signaling. The Journal of Experimental Medicine. 191: 463-74. PMID 10662792 DOI: 10.1084/jem.191.3.463  0.72
2000 Pandey A, Podtelejnikov AV, Blagoev B, Bustelo XR, Mann M, Lodish HF. Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. Proceedings of the National Academy of Sciences of the United States of America. 97: 179-84. PMID 10618391 DOI: 10.1073/pnas.97.1.179  0.72
1998 Roche S, Alonso G, Kazlauskas A, Dixit VM, Courtneidge SA, Pandey A. Src-like adaptor protein (Slap) is a negative regulator of mitogenesis. Current Biology : Cb. 8: 975-8. PMID 9742401 DOI: 10.1016/S0960-9822(98)70400-2  0.72
1996 Pandey A, Liu X, Dixon JE, Di Fiore PP, Dixit VM. Direct association between the Ret receptor tyrosine kinase and the Src homology 2-containing adapter protein Grb7. The Journal of Biological Chemistry. 271: 10607-10. PMID 8631863 DOI: 10.1074/jbc.271.18.10607  0.72
1995 Pandey A, Lindberg RA, Dixit VM. Cell signalling. Receptor orphans find a family. Current Biology : Cb. 5: 986-9. PMID 8542290  0.4
1995 Shao H, Pandey A, O'Shea KS, Seldin M, Dixit VM. Characterization of B61, the ligand for the Eck receptor protein-tyrosine kinase. The Journal of Biological Chemistry. 270: 5636-41. PMID 7890684 DOI: 10.1074/jbc.270.10.5636  0.72
1995 Shao H, Lou L, Pandey A, Verderame MF, Siever DA, Dixit VM. cDNA cloning and characterization of a Cek7 receptor protein-tyrosine kinase ligand that is identical to the ligand (ELF-1) for the Mek-4 and Sek receptor protein-tyrosine kinases. The Journal of Biological Chemistry. 270: 3467-70. PMID 7876076 DOI: 10.1074/jbc.270.8.3467  0.72
1995 Pandey A, Duan H, Di Fiore PP, Dixit VM. The Ret receptor protein tyrosine kinase associates with the SH2-containing adapter protein Grb10. The Journal of Biological Chemistry. 270: 21461-3. PMID 7665556  0.72
1995 Pandey A, Duan H, Dixit VM. Characterization of a novel Src-like adapter protein that associates with the Eck receptor tyrosine kinase. The Journal of Biological Chemistry. 270: 19201-4. PMID 7543898  0.4
1995 Pandey A, Shao H, Marks RM, Polverini PJ, Dixit VM. Role of B61, the ligand for the Eck receptor tyrosine kinase, in TNF-alpha-induced angiogenesis. Science (New York, N.Y.). 268: 567-9. PMID 7536959 DOI: 10.1126/science.7536959  0.72
1994 Pandey A, Lazar DF, Saltiel AR, Dixit VM. Activation of the Eck receptor protein tyrosine kinase stimulates phosphatidylinositol 3-kinase activity. The Journal of Biological Chemistry. 269: 30154-7. PMID 7982920  0.72
1994 Shao H, Lou L, Pandey A, Pasquale EB, Dixit VM. cDNA cloning and characterization of a ligand for the Cek5 receptor protein-tyrosine kinase. The Journal of Biological Chemistry. 269: 26606-9. PMID 7929389  0.4
1993 Pandey A, Tjoelker LW, Thompson CB. Restricted immunoglobulin junctional diversity in neonatal B cells results from developmental selection rather than homology-based V(D)J joining Journal of Experimental Medicine. 177: 329-337. PMID 8426107 DOI: 10.1084/JEM.177.2.329  0.72
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