Year |
Citation |
Score |
2014 |
Suzuki K, Hori A, Kawamoto K, Thangudu RR, Ishida T, Igarashi K, Samejima M, Yamada C, Arakawa T, Wakagi T, Koseki T, Fushinobu S. Crystal structure of a feruloyl esterase belonging to the tannase family: a disulfide bond near a catalytic triad. Proteins. 82: 2857-67. PMID 25066066 DOI: 10.1002/Prot.24649 |
0.466 |
|
2013 |
Li M, Shoemaker BA, Thangudu RR, Ferraris JD, Burg MB, Panchenko AR. Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamics. The Journal of Physical Chemistry. B. 117: 13226-34. PMID 23734591 DOI: 10.1021/Jp403310A |
0.305 |
|
2012 |
Tyagi M, Thangudu RR, Zhang D, Bryant SH, Madej T, Panchenko AR. Homology inference of protein-protein interactions via conserved binding sites. Plos One. 7: e28896. PMID 22303436 DOI: 10.1371/Journal.Pone.0028896 |
0.766 |
|
2012 |
Thangudu RR, Bryant SH, Panchenko AR, Madej T. Modulating protein-protein interactions with small molecules: the importance of binding hotspots. Journal of Molecular Biology. 415: 443-53. PMID 22198293 DOI: 10.1016/J.Jmb.2011.12.026 |
0.627 |
|
2012 |
Shoemaker BA, Zhang D, Tyagi M, Thangudu RR, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Research. 40: D834-40. PMID 22102591 DOI: 10.1093/Nar/Gkr997 |
0.746 |
|
2010 |
Thangudu RR, Tyagi M, Shoemaker BA, Bryant SH, Panchenko AR, Madej T. Knowledge-based annotation of small molecule binding sites in proteins. Bmc Bioinformatics. 11: 365. PMID 20594344 DOI: 10.1186/1471-2105-11-365 |
0.722 |
|
2010 |
Shoemaker BA, Zhang D, Thangudu RR, Tyagi M, Fong JH, Marchler-Bauer A, Bryant SH, Madej T, Panchenko AR. Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites. Nucleic Acids Research. 38: D518-24. PMID 19843613 DOI: 10.1093/Nar/Gkp842 |
0.75 |
|
2010 |
Tyagi M, Thangudu RR, Shoemaker BA, Bryant SH, Madej T, Panchenko AR. Inferring protein-protein interactions based on conservation of interfaces in homologs F1000research. 1. DOI: 10.7490/F1000Research.254.1 |
0.741 |
|
2008 |
Thangudu RR, Manoharan M, Srinivasan N, Cadet F, Sowdhamini R, Offmann B. Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families. Bmc Structural Biology. 8: 55. PMID 19111067 DOI: 10.1186/1472-6807-8-55 |
0.604 |
|
2007 |
Thangudu RR, Sharma P, Srinivasan N, Offmann B. Analycys: a database for conservation and conformation of disulphide bonds in homologous protein domains. Proteins. 67: 255-61. PMID 17285632 DOI: 10.1002/Prot.21318 |
0.738 |
|
2005 |
Thangudu RR, Vinayagam A, Pugalenthi G, Manonmani A, Offmann B, Sowdhamini R. Native and modeled disulfide bonds in proteins: knowledge-based approaches toward structure prediction of disulfide-rich polypeptides Proteins. 58: 866-879. PMID 15645448 DOI: 10.1002/Prot.20369 |
0.708 |
|
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