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Maria Vibranovski - Publications

Affiliations: 
Arizona State University, Tempe, AZ, United States 
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30/37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Xia S, VanKuren NW, Chen C, Zhang L, Kemkemer C, Shao Y, Jia H, Lee U, Advani AS, Gschwend A, Vibranovski MD, Chen S, Zhang YE, Long M. Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development. Plos Genetics. 17: e1009654. PMID 34242211 DOI: 10.1371/journal.pgen.1009654  0.838
2021 Mahadevaraju S, Fear JM, Akeju M, Galletta BJ, Pinheiro MMLS, Avelino CC, Cabral-de-Mello DC, Conlon K, Dell'Orso S, Demere Z, Mansuria K, Mendonça CA, Palacios-Gimenez OM, Ross E, Savery M, ... ... Vibranovski MD, et al. Dynamic sex chromosome expression in Drosophila male germ cells. Nature Communications. 12: 892. PMID 33563972 DOI: 10.1038/s41467-021-20897-y  0.507
2019 Raices JB, Otto PA, Vibranovski MD. Haploid selection drives new gene male germline expression. Genome Research. 29: 1115-1122. PMID 31221725 DOI: 10.1101/gr.238824.118  0.535
2019 Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. Corrigendum: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster Genome Research. 29: 1566_1-1566_1. DOI: 10.1101/Gr.255315.119  0.736
2017 Moreira de Mello JC, Fernandes GR, Vibranovski MD, Pereira LV. Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. Scientific Reports. 7: 10794. PMID 28883481 DOI: 10.1038/s41598-017-11044-z  0.394
2016 França GS, Vibranovski MD, Galante PA. Host gene constraints and genomic context impact the expression and evolution of human microRNAs. Nature Communications. 7: 11438. PMID 27109497 DOI: 10.1038/ncomms11438  0.365
2014 Vibranovski MD. Meiotic sex chromosome inactivation in Drosophila. Journal of Genomics. 2: 104-17. PMID 25057326 DOI: 10.7150/jgen.8178  0.375
2014 VanKuren NW, Vibranovski MD. A novel dataset for identifying sex-biased genes in Drosophila. Journal of Genomics. 2: 64-7. PMID 25031657 DOI: 10.7150/jgen.7955  0.811
2014 Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Research. 24: 629-38. PMID 24407956 DOI: 10.1101/Gr.165837.113  0.805
2013 Long M, VanKuren NW, Chen S, Vibranovski MD. New gene evolution: little did we know. Annual Review of Genetics. 47: 307-33. PMID 24050177 DOI: 10.1146/Annurev-Genet-111212-133301  0.823
2012 Zhang YE, Landback P, Vibranovski M, Long M. New genes expressed in human brains: implications for annotating evolving genomes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 982-91. PMID 23001763 DOI: 10.1002/Bies.201200008  0.817
2012 Vibranovski MD, Zhang YE, Kemkemer C, VanKuren NW, Lopes HF, Karr TL, Long M. Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. Bmc Evolutionary Biology. 12: 169. PMID 22950647 DOI: 10.1186/1471-2148-12-169  0.834
2012 Vibranovski MD, Zhang YE, Kemkemer C, Lopes HF, Karr TL, Long M. Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. Bmc Biology. 10: 49; author reply 50. PMID 22691264 DOI: 10.1186/1741-7007-10-49  0.733
2012 Chen S, Ni X, Krinsky BH, Zhang YE, Vibranovski MD, White KP, Long M. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. The Embo Journal. 31: 2798-809. PMID 22543869 DOI: 10.1038/Emboj.2012.108  0.817
2012 Wang J, Long M, Vibranovski MD. Retrogenes moved out of the z chromosome in the silkworm. Journal of Molecular Evolution. 74: 113-26. PMID 22535494 DOI: 10.1007/s00239-012-9499-y  0.674
2011 Zhang YE, Landback P, Vibranovski MD, Long M. Accelerated recruitment of new brain development genes into the human genome. Plos Biology. 9: e1001179. PMID 22028629 DOI: 10.1371/Journal.Pbio.1001179  0.793
2011 Chen M, Zou M, Fu B, Li X, Vibranovski MD, Gan X, Wang D, Wang W, Long M, He S. Evolutionary patterns of RNA-based duplication in non-mammalian chordates. Plos One. 6: e21466. PMID 21779328 DOI: 10.1371/Journal.Pone.0021466  0.653
2011 Zhang YE, Vibranovski MD, Krinsky BH, Long M. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics (Oxford, England). 27: 1749-53. PMID 21551137 DOI: 10.1093/bioinformatics/btr280  0.821
2011 Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M. Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. Molecular Biology and Evolution. 28: 2823-32. PMID 21546357 DOI: 10.1093/Molbev/Msr101  0.742
2010 Zhang YE, Vibranovski MD, Landback P, Marais GA, Long M. Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. Plos Biology. 8. PMID 20957185 DOI: 10.1371/Journal.Pbio.1000494  0.815
2010 Zhang YE, Vibranovski MD, Krinsky BH, Long M. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Research. 20: 1526-33. PMID 20798392 DOI: 10.1101/Gr.107334.110  0.829
2010 Vibranovski MD, Chalopin DS, Lopes HF, Long M, Karr TL. Direct evidence for postmeiotic transcription during Drosophila melanogaster spermatogenesis. Genetics. 186: 431-3. PMID 20610406 DOI: 10.1534/Genetics.110.118919  0.508
2009 Vibranovski MD, Lopes HF, Karr TL, Long M. Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. Plos Genetics. 5: e1000731. PMID 19936020 DOI: 10.1371/Journal.Pgen.1000731  0.72
2009 Vibranovski MD, Zhang Y, Long M. General gene movement off the X chromosome in the Drosophila genus. Genome Research. 19: 897-903. PMID 19251740 DOI: 10.1101/Gr.088609.108  0.723
2008 Vibranovski MD, Koerich LB, Carvalho AB. Two new Y-linked genes in Drosophila melanogaster. Genetics. 179: 2325-7. PMID 18660539 DOI: 10.1534/genetics.108.086819  0.569
2007 Havlioglu N, Wang J, Fushimi K, Vibranovski MD, Kan Z, Gish W, Fedorov A, Long M, Wu JY. An intronic signal for alternative splicing in the human genome. Plos One. 2: e1246. PMID 18043753 DOI: 10.1371/Journal.Pone.0001246  0.602
2007 Fan C, Vibranovski MD, Chen Y, Long M. A Microarray Based Genomic Hybridization Method for Identification of New Genes in Plants: Case Analyses of Arabidopsis and Oryza Journal of Integrative Plant Biology. 49: 915-926. DOI: 10.1111/J.1744-7909.2007.00503.X  0.789
2004 Sakabe NJ, Vibranovski MD, de Souza SJ. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins. Genetics and Molecular Research : Gmr. 3: 532-44. PMID 15688319  0.363
2003 Carvalho AB, Vibranovski MD, Carlson JW, Celniker SE, Hoskins RA, Rubin GM, Sutton GG, Adams MD, Myers EW, Clark AG. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica. 117: 227-37. PMID 12723702 DOI: 10.1023/A:1022900313650  0.502
2001 Carvalho AB, Dobo BA, Vibranovski MD, Clark AG. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 98: 13225-30. PMID 11687639 DOI: 10.1073/Pnas.231484998  0.601
Low-probability matches (unlikely to be authored by this person)
2023 Mercuri RLV, Conceição HB, Guardia GDA, Goldstein G, Vibranovski MD, Hinske LC, Galante PAF. Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition. Mobile Dna. 14: 12. PMID 37684690 DOI: 10.1186/s13100-023-00301-w  0.226
2017 França GS, Hinske LC, Galante PA, Vibranovski MD. Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs. Frontiers in Genetics. 8: 34. PMID 28377786 DOI: 10.3389/fgene.2017.00034  0.222
2021 Rodrigues MF, Vibranovski MD, Cogni R. Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations. Evolution; International Journal of Organic Evolution. PMID 34184262 DOI: 10.1111/evo.14300  0.184
2006 Parmigiani RB, Bettoni F, Vibranovski MD, Lopes MH, Martins WK, Cunha IW, Soares FA, Simpson AJ, de Souza SJ, Camargo AA. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proceedings of the National Academy of Sciences of the United States of America. 103: 18066-71. PMID 17114284 DOI: 10.1073/pnas.0608853103  0.169
2005 Vibranovski MD, Sakabe NJ, de Oliveira RS, de Souza SJ. Signs of ancient and modern exon-shuffling are correlated to the distribution of ancient and modern domains along proteins. Journal of Molecular Evolution. 61: 341-50. PMID 16034650 DOI: 10.1007/s00239-004-0318-y  0.152
2006 Vibranovski MD, Sakabe NJ, de Souza SJ. A possible role of exon-shuffling in the evolution of signal peptides of human proteins. Febs Letters. 580: 1621-4. PMID 16487520 DOI: 10.1016/j.febslet.2006.01.094  0.138
2019 Samogy-Costa CI, Varella-Branco E, Monfardini F, Ferraz H, Fock RA, Barbosa RHA, Pessoa ALS, Perez ABA, Lourenço N, Vibranovski M, Krepischi A, Rosenberg C, Passos-Bueno MR. A Brazilian cohort of individuals with Phelan-McDermid syndrome: genotype-phenotype correlation and identification of an atypical case. Journal of Neurodevelopmental Disorders. 11: 13. PMID 31319798 DOI: 10.1186/s11689-019-9273-1  0.06
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