| Year |
Citation |
Score |
| 2023 |
Flynn JM, Ahmed-Braimah YH, Long M, Wing RA, Clark AG. High quality genome assemblies reveal evolutionary dynamics of repetitive DNA and structural rearrangements in the Drosophila virilis sub-group. Genome Biology and Evolution. PMID 38159044 DOI: 10.1093/gbe/evad238 |
0.688 |
|
| 2023 |
Prakash PT, Chebotarov D, Zhang J, Kudrna DA, Torres RO, Natividad MA, Quintana MR, Song J, Maldonado L CE, Hechanova SL, Jena K, Wing RA, Henry A. Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice. Plant Physiology. PMID 37665979 DOI: 10.1093/plphys/kiad485 |
0.417 |
|
| 2023 |
Flynn JM, Ahmed-Braimah YH, Long M, Wing RA, Clark AG. High quality genome assemblies reveal evolutionary dynamics of repetitive DNA and structural rearrangements in the sub-group. Biorxiv : the Preprint Server For Biology. PMID 37645834 DOI: 10.1101/2023.08.13.553086 |
0.698 |
|
| 2023 |
Ntakirutimana F, Tranchant-Dubreuil C, Cubry P, Chougule K, Zhang J, Wing RA, Adam H, Lorieux M, Jouannic S. Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud. G3 (Bethesda, Md.). PMID 37535690 DOI: 10.1093/g3journal/jkad174 |
0.456 |
|
| 2023 |
Sedeek K, Zuccolo A, Fornasiero A, Weber AM, Sanikommu K, Sampathkumar S, Rivera LF, Butt H, Mussurova S, Alhabsi A, Nurmansyah N, Ryan EP, Wing RA, Mahfouz MM. Multi-omics resources for targeted agronomic improvement of pigmented rice. Nature Food. PMID 37169820 DOI: 10.1038/s43016-023-00742-9 |
0.332 |
|
| 2023 |
Yu Z, Chen Y, Zhou Y, Zhang Y, Li M, Ouyang Y, Chebotarov D, Mauleon R, Zhao H, Xie W, McNally KL, Wing RA, Guo W, Zhang J. Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice. Molecular Plant. PMID 36966359 DOI: 10.1016/j.molp.2023.03.012 |
0.48 |
|
| 2023 |
Zhou Y, Yu Z, Chebotarov D, Chougule K, Lu Z, Rivera LF, Kathiresan N, Al-Bader N, Mohammed N, Alsantely A, Mussurova S, Santos J, Thimma M, Troukhan M, Fornasiero A, ... Wing RA, et al. Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature Communications. 14: 1567. PMID 36944612 DOI: 10.1038/s41467-023-37004-y |
0.476 |
|
| 2023 |
Peñuela M, Riccio-Rengifo C, Finke J, Rocha C, Gkanogiannis A, Wing RA, Lorieux M. Prediction of crossover recombination using parental genomes. Plos One. 18: e0281804. PMID 36795698 DOI: 10.1371/journal.pone.0281804 |
0.357 |
|
| 2023 |
Zuccolo A, Mfarrej S, Celii M, Mussurova S, Rivera LF, Llaca V, Mohammed N, Pain A, Alrefaei AF, Alrefaei AF, Wing RA. The gyrfalcon (Falcon rusticolus) genome. G3 (Bethesda, Md.). PMID 36611193 DOI: 10.1093/g3journal/jkad001 |
0.505 |
|
| 2022 |
Alsantely A, Gutaker R, Navarrete Rodríguez ME, Arrieta-Espinoza G, Fuchs EJ, Costa de Oliveira A, Tohme J, Zuccolo A, Wing RA, Fornasiero A. The International Oryza Map Alignment Project (IOMAP): The Americas - Past achievements and future directions. Journal of Experimental Botany. PMID 36527431 DOI: 10.1093/jxb/erac490 |
0.382 |
|
| 2022 |
Liu J, Chen S, Liu M, Chen Y, Fan W, Lee S, Xiao H, Kudrna D, Li Z, Chen X, Peng Y, Tian K, Zhang B, Wing RA, Zhang J, et al. Full-Length Transcriptome Sequencing Reveals Alternative Splicing and lncRNA Regulation during Nodule Development in . International Journal of Molecular Sciences. 23. PMID 35806374 DOI: 10.3390/ijms23137371 |
0.347 |
|
| 2022 |
Zhou Y, Zhang C, Zhang L, Ye Q, Liu N, Wang M, Long G, Fan W, Long M, Wing RA. Gene fusion as an important mechanism to generate new genes in the genus Oryza. Genome Biology. 23: 130. PMID 35706016 DOI: 10.1186/s13059-022-02696-w |
0.727 |
|
| 2022 |
Athiyannan N, Abrouk M, Boshoff WHP, Cauet S, Rodde N, Kudrna D, Mohammed N, Bettgenhaeuser J, Botha KS, Derman SS, Wing RA, Prins R, Krattinger SG. Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning. Nature Genetics. 54: 227-231. PMID 35288708 DOI: 10.1038/s41588-022-01022-1 |
0.41 |
|
| 2022 |
Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, et al. Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics. G3 (Bethesda, Md.). PMID 35188189 DOI: 10.1093/g3journal/jkac017 |
0.494 |
|
| 2021 |
Song JM, Xie WZ, Wang S, Guo YX, Koo DH, Kudrna D, Gong C, Huang Y, Feng JW, Zhang W, Zhou Y, Zuccolo A, Long E, Lee S, Talag J, ... ... Wing RA, et al. Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice. Molecular Plant. PMID 34171480 DOI: 10.1016/j.molp.2021.06.018 |
0.49 |
|
| 2021 |
de Freitas KEJ, Dos Santos RS, Busanello C, de Carvalho Victoria F, Lopes JL, Wing RA, de Oliveira AC. () Evolution in the Genus . Plants (Basel, Switzerland). 10. PMID 34070565 DOI: 10.3390/plants10061057 |
0.398 |
|
| 2021 |
Wu Z, Liu H, Zhan W, Yu Z, Qin E, Liu S, Yang T, Xiang N, Kudrna D, Chen Y, Lee S, Li G, Wing RA, Liu J, Xiong H, et al. The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis. Plant Biotechnology Journal. PMID 33768699 DOI: 10.1111/pbi.13586 |
0.384 |
|
| 2021 |
Yu H, Lin T, Meng X, Du H, Zhang J, Liu G, Chen M, Jing Y, Kou L, Li X, Gao Q, Liang Y, Liu X, Fan Z, Liang Y, ... ... Wing RA, et al. A route to de novo domestication of wild allotetraploid rice. Cell. PMID 33539781 DOI: 10.1016/j.cell.2021.01.013 |
0.455 |
|
| 2021 |
Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, ... ... Wing RA, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1 |
0.385 |
|
| 2020 |
Paritosh K, Yadava SK, Singh P, Bhayana L, Mukhopadhyay A, Gupta V, Bisht NC, Zhang J, Kudrna DA, Copetti D, Wing RA, Reddy VB, Pradhan AK, Pental D. A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. Plant Biotechnology Journal. PMID 33073461 DOI: 10.1111/pbi.13492 |
0.387 |
|
| 2020 |
Mussurova S, Al-Bader N, Zuccolo A, Wing RA. Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice. Frontiers in Plant Science. 11: 579980. PMID 33072154 DOI: 10.3389/fpls.2020.579980 |
0.431 |
|
| 2020 |
Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, ... ... Wing RA, et al. Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). Gigascience. 9. PMID 32810278 DOI: 10.1093/Gigascience/Giaa080 |
0.31 |
|
| 2020 |
Park HS, Jayakodi M, Lee SH, Jeon JH, Lee HO, Park JY, Moon BC, Kim CK, Wing RA, Newmaster SG, Kim JY, Yang TJ. Mitochondrial plastid DNA can cause DNA barcoding paradox in plants. Scientific Reports. 10: 6112. PMID 32273595 DOI: 10.1038/S41598-020-63233-Y |
0.356 |
|
| 2020 |
Zhou Y, Chebotarov D, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez LJ, Franco N, Alexandrov N, Hamilton NRS, Leung H, ... ... Wing RA, et al. A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific Data. 7: 113. PMID 32265447 DOI: 10.1038/S41597-020-0438-2 |
0.383 |
|
| 2020 |
Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, ... ... Wing R, et al. Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels. Genome Biology and Evolution. PMID 32125373 DOI: 10.1093/Gbe/Evaa037 |
0.459 |
|
| 2020 |
Flynn JM, Long M, Wing RA, Clark AG. Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis. Molecular Biology and Evolution. PMID 31960929 DOI: 10.1093/Molbev/Msaa010 |
0.641 |
|
| 2020 |
McNally KL, Mauleon RP, Chebotarov D, Klassen SP, Kohli A, Ye G, Leung H, Hamilton RS, Wing RA. Mass genome sequencing of crops and wild relatives to accelerate crop breeding: the digital rice genebank Iop Conference Series: Earth and Environmental Science. 482: 012005. DOI: 10.1088/1755-1315/482/1/012005 |
0.375 |
|
| 2019 |
Jain R, Jenkins J, Shu S, Chern M, Martin JA, Copetti D, Duong PQ, Pham NT, Kudrna DA, Talag J, Schackwitz WS, Lipzen AM, Dilworth D, Bauer D, Grimwood J, ... ... Wing RA, et al. Genome sequence of the model rice variety KitaakeX. Bmc Genomics. 20: 905. PMID 31775618 DOI: 10.1186/S12864-019-6262-4 |
0.426 |
|
| 2019 |
Hazzouri KM, Gros-Balthazard M, Flowers JM, Copetti D, Lemansour A, Lebrun M, Masmoudi K, Ferrand S, Dhar MI, Fresquez ZA, Rosas U, Zhang J, Talag J, Lee S, Kudrna D, ... ... Wing RA, et al. Genome-wide association mapping of date palm fruit traits. Nature Communications. 10: 4680. PMID 31615981 DOI: 10.1038/S41467-019-12604-9 |
0.503 |
|
| 2019 |
Chen E, Huang X, Tian Z, Wing RA, Han B. The Genomics of Species Provides Insights into Rice Domestication and Heterosis. Annual Review of Plant Biology. 70: 639-665. PMID 31035826 DOI: 10.1146/Annurev-Arplant-050718-100320 |
0.489 |
|
| 2019 |
Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Structural variants in 3000 rice genomes. Genome Research. PMID 30992303 DOI: 10.1101/Gr.241240.118 |
0.473 |
|
| 2019 |
Zhang L, Ren Y, Yang T, Li G, Chen J, Gschwend AR, Yu Y, Hou G, Zi J, Zhou R, Wen B, Zhang J, Chougule K, Wang M, Copetti D, ... ... Wing RA, et al. Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution. PMID 30858588 DOI: 10.1038/S41559-019-0822-5 |
0.776 |
|
| 2019 |
Mangu VR, Ratnasekera D, Yabes JC, Wing RA, Baisakh N. Functional screening of genes from a halophyte wild rice relative Porteresia coarctata in Arabidopsis model identifies candidate genes involved in salt tolerance Current Plant Biology. 18: 100107. DOI: 10.1016/J.Cpb.2019.100107 |
0.327 |
|
| 2018 |
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2 |
0.723 |
|
| 2018 |
Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M. Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric regions. The Plant Cell. PMID 29967288 DOI: 10.1105/Tpc.18.00163 |
0.49 |
|
| 2018 |
Wing RA, Purugganan MD, Zhang Q. The rice genome revolution: from an ancient grain to Green Super Rice. Nature Reviews. Genetics. PMID 29872215 DOI: 10.1038/S41576-018-0024-Z |
0.41 |
|
| 2018 |
Lv S, Wu W, Wang M, Meyer RS, Ndjiondjop MN, Tan L, Zhou H, Zhang J, Fu Y, Cai H, Sun C, Wing RA, Zhu Z. Genetic control of seed shattering during African rice domestication. Nature Plants. 4: 331-337. PMID 29872176 DOI: 10.1038/S41477-018-0164-3 |
0.722 |
|
| 2018 |
Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, ... ... Wing RA, et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. PMID 29695866 DOI: 10.1038/S41586-018-0063-9 |
0.494 |
|
| 2018 |
Kim NH, Jayakodi M, Lee SC, Choi BS, Jang W, Lee J, Kim HH, Waminal NE, Lakshmanan M, Van Nguyen B, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, ... ... Wing RA, et al. Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal. PMID 29604169 DOI: 10.1111/Pbi.12926 |
0.465 |
|
| 2018 |
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0 |
0.769 |
|
| 2017 |
Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ. Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078296 DOI: 10.1073/Pnas.1706367114 |
0.49 |
|
| 2017 |
Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Wing R, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/S41559-017-0119 |
0.308 |
|
| 2017 |
Wu W, Liu X, Wang M, Meyer RS, Luo X, Ndjiondjop MN, Tan L, Zhang J, Wu J, Cai H, Sun C, Wang X, Wing RA, Zhu Z. A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants. 3: 17064. PMID 28481332 DOI: 10.1038/Nplants.2017.64 |
0.685 |
|
| 2017 |
Dos Santos RS, Farias DD, Pegoraro C, Rombaldi CV, Fukao T, Wing RA, de Oliveira AC. Evolutionary analysis of the SUB1 locus across the Oryza genomes. Rice (New York, N.Y.). 10: 4. PMID 28176282 DOI: 10.1186/S12284-016-0140-3 |
0.348 |
|
| 2017 |
Choi JY, Platts AE, Fuller DQ, Hsing YI, Wing RA, Purugganan MD. The rice paradox: Multiple origins but single domestication in Asian rice. Molecular Biology and Evolution. PMID 28087768 DOI: 10.1093/Molbev/Msx049 |
0.32 |
|
| 2017 |
Eizenga GC, Sanchez PL, Jackson AK, Edwards JD, Hurwitz BL, Wing RA, Kudrna DA. Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population Molecular Breeding. 37: 135. DOI: 10.1007/S11032-017-0734-5 |
0.311 |
|
| 2016 |
Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, et al. Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Research. PMID 27899667 DOI: 10.1093/Nar/Gkw1135 |
0.309 |
|
| 2016 |
Brozynska M, Copetti D, Furtado A, Wing RA, Crayn D, Fox G, Ishikawa R, Henry RJ. Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal. PMID 27889940 DOI: 10.1111/Pbi.12674 |
0.521 |
|
| 2016 |
Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16189. PMID 27819656 DOI: 10.1038/nplants.2016.189 |
0.435 |
|
| 2016 |
Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16167. PMID 27797353 DOI: 10.1038/Nplants.2016.167 |
0.502 |
|
| 2016 |
van Andel TR, Meyer RS, Aflitos SA, Carney JA, Veltman MA, Copetti D, Flowers JM, Havinga RM, Maat H, Purugganan MD, Wing RA, Schranz ME. Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants. 2: 16149. PMID 27694825 DOI: 10.1038/Nplants.2016.149 |
0.398 |
|
| 2016 |
Copetti D, Wing RA. The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes. Molecular Plant. PMID 27693675 DOI: 10.1016/J.Molp.2016.09.006 |
0.372 |
|
| 2016 |
Zhang J, Chen LL, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao WB, Xing F, Lee S, Talag J, Song JM, Du B, Xie W, Luo M, ... ... Wing RA, et al. Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data. Scientific Data. 3: 160076. PMID 27622467 DOI: 10.1038/Sdata.2016.76 |
0.401 |
|
| 2016 |
Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S. DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications. 7: 12790. PMID 27599761 DOI: 10.1038/Ncomms12790 |
0.353 |
|
| 2016 |
Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, ... ... Wing RA, et al. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535938 DOI: 10.1073/Pnas.1611012113 |
0.514 |
|
| 2016 |
Zhang J, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea JL, Lei Y, Wing RA. Genome Puzzle Master (GPM) - An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics (Oxford, England). PMID 27318200 DOI: 10.1093/Bioinformatics/Btw370 |
0.378 |
|
| 2016 |
Ray S, Bose LK, Ray J, Ngangkham U, Katara JL, Samantaray S, Behera L, Anumalla M, Singh ON, Chen M, Wing RA, Mohapatra T. Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics : Mgg. PMID 27299359 DOI: 10.1007/S00438-016-1214-Z |
0.44 |
|
| 2016 |
Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/S13059-016-0954-8 |
0.441 |
|
| 2016 |
Bai Z, Chen J, Liao Y, Wang M, Liu R, Ge S, Wing RA, Chen M. The impact and origin of copy number variations in the Oryza species. Bmc Genomics. 17: 261. PMID 27025496 DOI: 10.1186/S12864-016-2589-2 |
0.485 |
|
| 2016 |
Wendel JF, Jackson SA, Meyers BC, Wing RA. Evolution of plant genome architecture. Genome Biology. 17: 37. PMID 26926526 DOI: 10.1186/S13059-016-0908-1 |
0.4 |
|
| 2015 |
De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, ... ... Wing RA, et al. Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports. 5: 17394. PMID 26617401 DOI: 10.1038/Srep17394 |
0.495 |
|
| 2015 |
Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, ... ... Wing RA, et al. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports. 5: 15655. PMID 26506948 DOI: 10.1038/Srep15655 |
0.459 |
|
| 2015 |
Wing RA. Harvesting rice's dispensable genome. Genome Biology. 16: 217. PMID 26429765 DOI: 10.1186/S13059-015-0787-X |
0.412 |
|
| 2015 |
Wicker T, Wing RA, Schubert I. Recurrent sequence exchange between homeologous grass chromosomes. The Plant Journal : For Cell and Molecular Biology. PMID 26408412 DOI: 10.1111/Tpj.13040 |
0.362 |
|
| 2015 |
Zhang Y, Zhang S, Liu H, Fu B, Li L, Xie M, Song Y, Li X, Cai J, Wan W, Kui L, Huang H, Lyu J, Dong Y, Wang W, ... ... Wing RA, et al. Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant. PMID 26358679 DOI: 10.1016/J.Molp.2015.08.006 |
0.707 |
|
| 2015 |
Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, ... ... Wing R, et al. Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. The Plant Journal : For Cell and Molecular Biology. PMID 26252423 DOI: 10.1111/Tpj.12959 |
0.5 |
|
| 2015 |
Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. American Journal of Botany. 102: 1115-27. PMID 26199368 DOI: 10.3732/Ajb.1500184 |
0.468 |
|
| 2015 |
Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, ... ... Wing RA, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/S12864-015-1762-3 |
0.45 |
|
| 2015 |
Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/Fpls.2015.00216 |
0.452 |
|
| 2014 |
Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/Ncomms6269 |
0.442 |
|
| 2014 |
Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, ... ... Wing RA, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/Ng.3044 |
0.763 |
|
| 2014 |
Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, ... ... Wing RA, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/Ng.3008 |
0.523 |
|
| 2014 |
Zwickl DJ, Stein JC, Wing RA, Ware D, Sanderson MJ. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology. 63: 645-59. PMID 24721692 DOI: 10.1093/Sysbio/Syu027 |
0.421 |
|
| 2014 |
Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M. Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics. 196: 937-49. PMID 24424778 DOI: 10.1534/Genetics.113.159970 |
0.405 |
|
| 2014 |
Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M. Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. The Plant Journal : For Cell and Molecular Biology. 77: 795-805. PMID 24330235 DOI: 10.1111/Tpj.12412 |
0.36 |
|
| 2014 |
Jacquemin J, Ammiraju JS, Haberer G, Billheimer DD, Yu Y, Liu LC, Rivera LF, Mayer K, Chen M, Wing RA. Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant. 7: 642-56. PMID 24214894 DOI: 10.1093/Mp/Sst149 |
0.448 |
|
| 2013 |
Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/Science.1241130 |
0.439 |
|
| 2013 |
Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, et al. Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics. 195: 723-37. PMID 24037269 DOI: 10.1534/Genetics.113.157115 |
0.478 |
|
| 2013 |
Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, et al. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology. 83: 177-89. PMID 23708951 DOI: 10.1007/S11103-013-0077-5 |
0.452 |
|
| 2013 |
Zhang Q, Wing R. Genome studies and molecular genetics: understanding the functional genome based on the rice model. Current Opinion in Plant Biology. 16: 129-32. PMID 23706861 DOI: 10.1016/J.Pbi.2013.04.003 |
0.399 |
|
| 2013 |
Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/Gbe/Evt071 |
0.703 |
|
| 2013 |
Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers in Plant Science. 4: 46. PMID 23518688 DOI: 10.3389/Fpls.2013.00046 |
0.429 |
|
| 2013 |
Jacquemin J, Bhatia D, Singh K, Wing RA. The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology. 16: 147-56. PMID 23518283 DOI: 10.1016/J.Pbi.2013.02.014 |
0.366 |
|
| 2013 |
Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, ... ... Wing RA, et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications. 4: 1595. PMID 23481403 DOI: 10.1038/Ncomms2596 |
0.53 |
|
| 2013 |
Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110 |
0.313 |
|
| 2013 |
Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR. Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. Bmc Plant Biology. 13: 27. PMID 23410187 DOI: 10.1186/1471-2229-13-27 |
0.318 |
|
| 2013 |
Horvath DP, Kudrna D, Talag J, Anderson JV, Chao WS, Wing R, Foley ME, Doǧramaci M. BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs Weed Science. 61: 303-309. DOI: 10.1614/Ws-D-12-00175.1 |
0.484 |
|
| 2012 |
Yang L, Liu T, Li B, Sui Y, Chen J, Shi J, Wing RA, Chen M. Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes. Plos One. 7: e50236. PMID 23185584 DOI: 10.1371/Journal.Pone.0050236 |
0.478 |
|
| 2012 |
Figueira TR, Okura V, Rodrigues da Silva F, Jose da Silva M, Kudrna D, Ammiraju JS, Talag J, Wing R, Arruda P. A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. Bmc Research Notes. 5: 185. PMID 22524198 DOI: 10.1186/1756-0500-5-185 |
0.431 |
|
| 2012 |
Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.). G3 (Bethesda, Md.). 2: 321-9. PMID 22413085 DOI: 10.1534/G3.111.001834 |
0.389 |
|
| 2012 |
Li HJ, Li XH, Xiao JH, Wing RA, Wang SP. Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice. Molecular Plant. 5: 281-90. PMID 21930802 DOI: 10.1093/Mp/Ssr079 |
0.448 |
|
| 2011 |
Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/Tpc.111.085605 |
0.477 |
|
| 2011 |
Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Wing RA, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/Gb-2011-12-5-R48 |
0.441 |
|
| 2011 |
Jacquemin J, Chaparro C, Laudié M, Berger A, Gavory F, Goicoechea JL, Wing RA, Cooke R. Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species. Molecular Biology and Evolution. 28: 3139-50. PMID 21616911 DOI: 10.1093/Molbev/Msr144 |
0.565 |
|
| 2011 |
Blair MW, Hurtado N, Chavarro CM, Muñoz-Torres MC, Giraldo MC, Pedraza F, Tomkins J, Wing R. Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. Bmc Plant Biology. 11: 50. PMID 21426554 DOI: 10.1186/1471-2229-11-50 |
0.313 |
|
| 2011 |
Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA. Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. Bmc Genomics. 12: 142. PMID 21385395 DOI: 10.1186/1471-2164-12-142 |
0.441 |
|
| 2011 |
Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J. Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. Bmc Genomics. 12: 137. PMID 21375742 DOI: 10.1186/1471-2164-12-137 |
0.484 |
|
| 2011 |
Song X, Goicoechea JL, Ammiraju JS, Luo M, He R, Lin J, Lee SJ, Sisneros N, Watts T, Kudrna DA, Golser W, Ashley E, Collura K, Braidotti M, Yu Y, ... ... Wing RA, et al. The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics. 187: 1023-30. PMID 21321134 DOI: 10.1534/Genetics.111.126540 |
0.481 |
|
| 2011 |
Lin J, Kudrna D, Wing RA. Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine & Biotechnology. 2011: 476723. PMID 21234344 DOI: 10.1155/2011/476723 |
0.369 |
|
| 2011 |
Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736 |
0.476 |
|
| 2011 |
Gao D, Gong Z, Wing RA, Jiang J, Jackson SA. Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata Tropical Plant Biology. 4: 217-227. DOI: 10.1007/S12042-011-9083-4 |
0.343 |
|
| 2010 |
Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, ... Wing RA, et al. An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. Plos One. 5: e13461. PMID 20976139 DOI: 10.1371/Journal.Pone.0013461 |
0.363 |
|
| 2010 |
Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L. Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 990-1003. PMID 20626650 DOI: 10.1111/J.1365-313X.2010.04293.X |
0.525 |
|
| 2010 |
Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, ... ... Wing RA, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395 |
0.409 |
|
| 2010 |
Geraldes A, Rambo T, Wing RA, Ferrand N, Nachman MW. Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution. 27: 2437-40. PMID 20525900 DOI: 10.1093/Molbev/Msq139 |
0.391 |
|
| 2010 |
Sanyal A, Ammiraju JS, Lu F, Yu Y, Rambo T, Currie J, Kollura K, Kim HR, Chen J, Ma J, San Miguel P, Mingsheng C, Wing RA, Jackson SA. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Molecular Biology and Evolution. 27: 2487-506. PMID 20522726 DOI: 10.1093/Molbev/Msq133 |
0.451 |
|
| 2010 |
Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, ... ... Wing RA, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X |
0.441 |
|
| 2010 |
Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL. Genomic structure and evolution of the Pi2/9 locus in wild rice species. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 295-309. PMID 20229250 DOI: 10.1007/S00122-010-1310-0 |
0.527 |
|
| 2010 |
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/Nature08670 |
0.526 |
|
| 2010 |
Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872 |
0.463 |
|
| 2010 |
Ammiraju JSS, Song X, Luo M, Sisneros N, Angelova A, Kudrna D, Kim H, Yu Y, Goicoechea JL, Lorieux M, Kurata N, Brar D, Ware D, Jackson S, Wing RA. The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives Breeding Science. 60: 536-543. DOI: 10.1270/Jsbbs.60.536 |
0.474 |
|
| 2010 |
Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1 |
0.463 |
|
| 2010 |
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Erratum: Genome sequence of the palaeopolyploid soybean Nature. 465: 120-120. DOI: 10.1038/Nature08957 |
0.409 |
|
| 2010 |
Gill N, SanMiguel P, Dhillon BDS, Abernathy B, Kim H, Stein L, Ware D, Wing R, Jackson SA. Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents Rice. 3: 251-269. DOI: 10.1007/S12284-010-9054-7 |
0.441 |
|
| 2010 |
Goicoechea JL, Ammiraju JSS, Marri PR, Chen M, Jackson S, Yu Y, Rounsley S, Wing RA. The future of rice genomics: Sequencing the collective Oryza genome Rice. 3: 89-97. DOI: 10.1007/S12284-010-9052-9 |
0.458 |
|
| 2010 |
Zuccolo A, Sebastian A, Yu Y, Jackson S, Rounsley S, Billheimer D, Wing RA. Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima Rice. 3: 242-250. DOI: 10.1007/S12284-010-9046-7 |
0.325 |
|
| 2009 |
Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA. Species trees from highly incongruent gene trees in rice. Systematic Biology. 58: 489-500. PMID 20525603 DOI: 10.1093/Sysbio/Syp054 |
0.353 |
|
| 2009 |
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Wing RA, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534 |
0.511 |
|
| 2009 |
Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/Journal.Pgen.1000711 |
0.347 |
|
| 2009 |
Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, ... ... Wing RA, et al. The physical and genetic framework of the maize B73 genome. Plos Genetics. 5: e1000715. PMID 19936061 DOI: 10.1371/Journal.Pgen.1000715 |
0.341 |
|
| 2009 |
Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Wing RA, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728 |
0.48 |
|
| 2009 |
Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X |
0.453 |
|
| 2009 |
Nah G, Pagliarulo CL, Mohr PG, Luo M, Sisneros N, Yu Y, Collura K, Currie J, Goicoechea JL, Wing RA, Schumaker KS. Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics. 94: 196-203. PMID 19481598 DOI: 10.1016/J.Ygeno.2009.05.007 |
0.373 |
|
| 2009 |
Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proceedings of the National Academy of Sciences of the United States of America. 106: 9063-8. PMID 19451630 DOI: 10.1073/Pnas.0900194106 |
0.394 |
|
| 2009 |
Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 2071-6. PMID 19164767 DOI: 10.1073/Pnas.0812798106 |
0.569 |
|
| 2009 |
Rounsley S, Marri PR, Yu Y, He R, Sisneros N, Goicoechea JL, Lee SJ, Angelova A, Kudrna D, Luo M, Affourtit J, Desany B, Knight J, Niazi F, Egholm M, ... Wing RA, et al. De novo next generation sequencing of plant genomes Rice. 2: 35-43. DOI: 10.1007/S12284-009-9025-Z |
0.361 |
|
| 2008 |
Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/Mp/Ssn050 |
0.726 |
|
| 2008 |
Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, et al. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. Bmc Genomics. 9: 621. PMID 19099592 DOI: 10.1186/1471-2164-9-621 |
0.434 |
|
| 2008 |
Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, ... ... Wing RA, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727 |
0.529 |
|
| 2008 |
Le Cunff L, Garsmeur O, Raboin LM, Pauquet J, Telismart H, Selvi A, Grivet L, Philippe R, Begum D, Deu M, Costet L, Wing R, Glaszmann JC, D'Hont A. Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115). Genetics. 180: 649-60. PMID 18757946 DOI: 10.1534/Genetics.108.091355 |
0.33 |
|
| 2008 |
Wei F, Wing RA. A fruitful outcome to the papaya genome project. Genome Biology. 9: 227. PMID 18557995 DOI: 10.1186/Gb-2008-9-6-227 |
0.383 |
|
| 2008 |
Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF. A phylogenetic analysis of indel dynamics in the cotton genus. Molecular Biology and Evolution. 25: 1415-28. PMID 18400789 DOI: 10.1093/Molbev/Msn085 |
0.433 |
|
| 2008 |
Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/Gb-2008-9-3-402 |
0.412 |
|
| 2008 |
Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, ... ... Wing RA, et al. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biology. 9: R45. PMID 18304353 DOI: 10.1186/Gb-2008-9-2-R45 |
0.382 |
|
| 2008 |
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Wing RA, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/Nar/Gkm978 |
0.446 |
|
| 2008 |
Roulin A, Piegu B, Wing RA, Panaud O. Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 53: 950-9. PMID 18088314 DOI: 10.1111/J.1365-313X.2007.03388.X |
0.407 |
|
| 2008 |
Qu S, Desai A, Wing R, Sundaresan V. A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiology. 146: 189-99. PMID 17993541 DOI: 10.1104/Pp.107.111427 |
0.344 |
|
| 2008 |
Maughan PJ, Sisneros N, Luo M, Kudrna D, Ammiraju JSS, Wing RA. Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes Crop Science. 48: S85-S94. DOI: 10.2135/Cropsci2007.08.0434Tpg |
0.428 |
|
| 2008 |
Meier S, Gehring C, MacPherson CR, Kaur M, Maqungo M, Reuben S, Muyanga S, Shih MD, Wei FJ, Wanchana S, Mauleon R, Radovanovic A, Bruskiewich R, Tanaka T, Mohanty B, ... ... Wing R, et al. The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network Rice. 1: 177-187. DOI: 10.1007/S12284-008-9017-4 |
0.334 |
|
| 2008 |
Zuccolo A, Ammiraju JSS, Kim H, Sanyal A, Jackson S, Wing RA. Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza Rice. 1: 85-99. DOI: 10.1007/S12284-008-9002-Y |
0.388 |
|
| 2008 |
Schlueter JA, Goicoechea JL, Collura K, Gill N, Lin J, Yu Y, Kudrna D, Zuccolo A, Vallejos CE, Muñoz-Torres M, Blair MW, Tohme J, Tomkins J, McClean P, Wing RA, et al. BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome Tropical Plant Biology. 1: 40-48. DOI: 10.1007/S12042-007-9003-9 |
0.369 |
|
| 2007 |
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Wing RA, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341 |
0.726 |
|
| 2007 |
Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/J.1365-313X.2007.03242.X |
0.437 |
|
| 2007 |
Zuccolo A, Sebastian A, Talag J, Yu Y, Kim H, Collura K, Kudrna D, Wing RA. Transposable element distribution, abundance and role in genome size variation in the genus Oryza. Bmc Evolutionary Biology. 7: 152. PMID 17727727 DOI: 10.1186/1471-2148-7-152 |
0.381 |
|
| 2007 |
Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, ... ... Wing RA, et al. Physical and genetic structure of the maize genome reflects its complex evolutionary history. Plos Genetics. 3: e123. PMID 17658954 DOI: 10.1371/Journal.Pgen.0030123 |
0.461 |
|
| 2007 |
Venu RC, Jia Y, Gowda M, Jia MH, Jantasuriyarat C, Stahlberg E, Li H, Rhineheart A, Boddhireddy P, Singh P, Rutger N, Kudrna D, Wing R, Nelson JC, Wang GL. RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection. Molecular Genetics and Genomics : Mgg. 278: 421-31. PMID 17579886 DOI: 10.1007/S00438-007-0260-Y |
0.391 |
|
| 2007 |
Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). The Plant Journal : For Cell and Molecular Biology. 50: 995-1006. PMID 17461788 DOI: 10.1111/J.1365-313X.2007.03102.X |
0.442 |
|
| 2007 |
Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics. 176: 379-90. PMID 17339227 DOI: 10.1534/Genetics.106.068783 |
0.433 |
|
| 2007 |
Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics : Tig. 23: 134-9. PMID 17275131 DOI: 10.1016/J.Tig.2007.01.004 |
0.316 |
|
| 2007 |
Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, ... ... Wing RA, et al. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research. 17: 175-83. PMID 17210932 DOI: 10.1101/Gr.5509507 |
0.504 |
|
| 2007 |
Liang H, Fang EG, Tomkins JP, Luo M, Kudrna D, Kim HR, Arumuganathan K, Zhao S, Leebens-Mack J, Schlarbaum SE, Banks JA, Depamphilis CW, Mandoli DF, Wing RA, Carlson JE. Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis Tree Genetics and Genomes. 3: 215-225. DOI: 10.1007/S11295-006-0057-X |
0.451 |
|
| 2007 |
Matsumoto T, Wing RA, Han B, Sasaki T. Rice genome sequence: The foundation for understanding the genetic systems Rice Functional Genomics: Challenges, Progress and Prospects. 5-20. DOI: 10.1007/0-387-48914-2_2 |
0.374 |
|
| 2006 |
Adema CM, Luo MZ, Hanelt B, Hertel LA, Marshall JJ, Zhang SM, DeJong RJ, Kim HR, Kudrna D, Wing RA, Soderlund C, Knight M, Lewis FA, Caldeira RL, Jannotti-Passos LK, et al. A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. Memã³Rias Do Instituto Oswaldo Cruz. 101: 167-77. PMID 17308766 DOI: 10.1590/S0074-02762006000900027 |
0.452 |
|
| 2006 |
Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310 |
0.448 |
|
| 2006 |
Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research. 16: 1262-9. PMID 16963705 DOI: 10.1101/Gr.5290206 |
0.447 |
|
| 2006 |
Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research. 16: 1252-61. PMID 16954538 DOI: 10.1101/Gr.5282906 |
0.453 |
|
| 2006 |
Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, ... ... Wing RA, et al. Uneven chromosome contraction and expansion in the maize genome. Genome Research. 16: 1241-51. PMID 16902087 DOI: 10.1101/Gr.5338906 |
0.461 |
|
| 2006 |
Cunningham C, Hikima J, Jenny MJ, Chapman RW, Fang GC, Saski C, Lundqvist ML, Wing RA, Cupit PM, Gross PS, Warr GW, Tomkins JP. New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas). Marine Biotechnology (New York, N.Y.). 8: 521-33. PMID 16896533 DOI: 10.1007/S10126-006-6013-9 |
0.424 |
|
| 2006 |
Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, ... ... Wing RA, et al. Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. Bmc Genomics. 7: 199. PMID 16895597 DOI: 10.1186/1471-2164-7-199 |
0.471 |
|
| 2006 |
Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794 |
0.422 |
|
| 2006 |
Luo M, Kim H, Kudrna D, Sisneros NB, Lee SJ, Mueller C, Collura K, Zuccolo A, Buckingham EB, Grim SM, Yanagiya K, Inoko H, Shiina T, Flajnik MF, Wing RA, et al. Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. Bmc Genomics. 7: 106. PMID 16672057 DOI: 10.1186/1471-2164-7-106 |
0.398 |
|
| 2006 |
Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, ... ... Wing R, et al. A global assembly of cotton ESTs. Genome Research. 16: 441-50. PMID 16478941 DOI: 10.1101/Gr.4602906 |
0.442 |
|
| 2006 |
Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, ... ... Wing RA, et al. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research. 16: 140-7. PMID 16344555 DOI: 10.1101/Gr.3766306 |
0.481 |
|
| 2006 |
Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics. 87: 181-90. PMID 16321505 DOI: 10.1016/J.Ygeno.2005.09.005 |
0.414 |
|
| 2006 |
Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Erratum to “Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region” [Genomics 87 (2006) 181–190] Genomics. 87: 678-679. DOI: 10.1016/J.Ygeno.2006.01.008 |
0.342 |
|
| 2006 |
Lin YR, Chow TY, Luo M, Kudrna D, Lin CC, Wing RA, Hsing YIC. Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research Plant Science. 170: 889-896. DOI: 10.1016/J.Plantsci.2005.12.016 |
0.461 |
|
| 2005 |
Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J. Structure and architecture of the maize genome. Plant Physiology. 139: 1612-24. PMID 16339807 DOI: 10.1104/Pp.105.068718 |
0.52 |
|
| 2005 |
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, et al. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology. 59: 53-62. PMID 16217601 DOI: 10.1007/S11103-004-6237-X |
0.403 |
|
| 2005 |
Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1596-607. PMID 16200416 DOI: 10.1007/S00122-005-0091-3 |
0.454 |
|
| 2005 |
Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/Pp.105.066134 |
0.314 |
|
| 2005 |
Nelson WM, Bharti AK, Butler E, Wei F, Fuks G, Kim H, Wing RA, Messing J, Soderlund C. Whole-genome validation of high-information-content fingerprinting. Plant Physiology. 139: 27-38. PMID 16166258 DOI: 10.1104/Pp.105.061978 |
0.319 |
|
| 2005 |
Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, ... ... Wing RA, et al. Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proceedings of the National Academy of Sciences of the United States of America. 102: 13206-11. PMID 16141333 DOI: 10.1073/Pnas.0502365102 |
0.489 |
|
| 2005 |
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, ... ... Wing RA, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/Gr.3869505 |
0.448 |
|
| 2005 |
Yang TJ, Lee S, Chang SB, Yu Y, de Jong H, Wing RA. In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma. 114: 103-17. PMID 15965704 DOI: 10.1007/S00412-005-0342-8 |
0.343 |
|
| 2005 |
Yang TJ, Yu Y, Chang SB, de Jong H, Oh CS, Ahn SN, Fang E, Wing RA. Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 467-78. PMID 15965650 DOI: 10.1007/S00122-005-2034-4 |
0.357 |
|
| 2005 |
Wang W, Tanurdzic M, Luo M, Sisneros N, Kim HR, Weng JK, Kudrna D, Mueller C, Arumuganathan K, Carlson J, Chapple C, de Pamphilis C, Mandoli D, Tomkins J, Wing RA, et al. Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. Bmc Plant Biology. 5: 10. PMID 15955246 DOI: 10.1186/1471-2229-5-10 |
0.422 |
|
| 2005 |
Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/Pp.104.055624 |
0.425 |
|
| 2005 |
Horn R, Lecouls AC, Callahan A, Dandekar A, Garay L, McCord P, Howad W, Chan H, Verde I, Main D, Jung S, Georgi L, Forrest S, Mook J, Zhebentyayeva T, ... ... Wing R, et al. Candidate gene database and transcript map for peach, a model species for fruit trees. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 110: 1419-28. PMID 15846479 DOI: 10.1007/S00122-005-1968-X |
0.418 |
|
| 2005 |
Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, ... ... Wing RA, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20 |
0.496 |
|
| 2005 |
Yu Y, Wing RA. Whole genome sequencing: Methodology and progress in cereals Cereal Genomics. 385-423. DOI: 10.1007/1-4020-2359-6_13 |
0.385 |
|
| 2004 |
Tomkins J, Fregene M, Main D, Kim H, Wing R, Tohme J. Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz). Plant Molecular Biology. 56: 555-61. PMID 15630619 DOI: 10.1007/S11103-004-5045-7 |
0.385 |
|
| 2004 |
Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA. Sequence composition and genome organization of maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 14349-54. PMID 15388850 DOI: 10.1073/Pnas.0406163101 |
0.519 |
|
| 2004 |
Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/J.Fgb.2004.02.003 |
0.36 |
|
| 2004 |
Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Incongruent patterns of local and global genome size evolution in cotton. Genome Research. 14: 1474-82. PMID 15256507 DOI: 10.1101/Gr.2673204 |
0.495 |
|
| 2004 |
Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S. Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor. Genetics. 167: 471-83. PMID 15166170 DOI: 10.1534/Genetics.167.1.471 |
0.336 |
|
| 2004 |
Singh NK, Raghuvanshi S, Srivastava SK, Gaur A, Pal AK, Dalal V, Singh A, Ghazi IA, Bhargav A, Yadav M, Dixit A, Batra K, Gaikwad K, Sharma TR, Mohanty A, ... ... Wing R, et al. Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny. Functional & Integrative Genomics. 4: 102-17. PMID 15085449 DOI: 10.1007/S10142-004-0109-Y |
0.484 |
|
| 2004 |
Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology. 134: 960-8. PMID 15020760 DOI: 10.1104/Pp.103.034462 |
0.46 |
|
| 2004 |
Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Plant Physiology. 134: 1317-26. PMID 15020742 DOI: 10.1104/Pp.103.034538 |
0.36 |
|
| 2004 |
Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, ... ... Wing RA, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 166: 389-417. PMID 15020432 DOI: 10.1534/Genetics.166.1.389 |
0.425 |
|
| 2004 |
Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science (New York, N.Y.). 304: 304-7. PMID 15001715 DOI: 10.1126/Science.1095781 |
0.547 |
|
| 2003 |
Luo M, Wing RA. An improved method for plant BAC library construction Methods in Molecular Biology (Clifton, N.J.). 236: 3-20. PMID 14501055 DOI: 10.1385/1-59259-413-1:3 |
0.385 |
|
| 2003 |
Yang TJ, Yu Y, Nah G, Atkins M, Lee S, Frisch DA, Wing RA. Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 652-60. PMID 12783166 DOI: 10.1007/S00122-003-1302-4 |
0.404 |
|
| 2003 |
Georgi LL, Wang Y, Reighard GL, Mao L, Wing RA, Abbott AG. Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods Genome. 46: 268-276. PMID 12723043 DOI: 10.1139/G03-004 |
0.487 |
|
| 2003 |
Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/Molbev/Msg065 |
0.413 |
|
| 2002 |
Wei F, Wing RA, Wise RP. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. The Plant Cell. 14: 1903-17. PMID 12172030 DOI: 10.1105/Tpc.002238 |
0.479 |
|
| 2002 |
Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031 |
0.311 |
|
| 2002 |
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, ... ... Wing R, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (New York, N.Y.). 296: 92-100. PMID 11935018 DOI: 10.1126/science.1068275 |
0.501 |
|
| 2002 |
Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Wing RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485 |
0.417 |
|
| 2002 |
Wechter WP, Begum D, Presting G, Kim JJ, Wing RA, Kluepfel DA. Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R. Omics : a Journal of Integrative Biology. 6: 11-21. PMID 11881828 DOI: 10.1089/15362310252780807 |
0.361 |
|
| 2002 |
Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272 DOI: 10.1093/Nar/30.1.121 |
0.399 |
|
| 2002 |
Tomkins JP, Davis G, Main D, Yim Y, Duru N, Musket T, Goicoechea JL, Frisch DA, Coe EH, Wing RA. Construction and Characterization of a Deep‐Coverage Bacterial Artificial Chromosome Library for Maize Crop Science. 42: 928-933. DOI: 10.2135/Cropsci2002.9280 |
0.364 |
|
| 2002 |
Roche D, Conner JA, Budiman MA, Frisch D, Wing R, Hanna WW, Ozias-Akins P. Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions Theoretical and Applied Genetics. 104: 804-812. DOI: 10.1007/s00122-001-0795-y |
0.414 |
|
| 2001 |
Cheng Z, Buell CR, Wing RA, Gu M, Jiang J. Toward a cytological characterization of the rice genome Genome Research. 11: 2133-2141. PMID 11731505 DOI: 10.1101/Gr.194601 |
0.331 |
|
| 2001 |
Tomkins JP, Wood TC, Stacey MG, Loh JT, Judd A, Goicoechea JL, Stacey G, Sadowsky MJ, Wing RA. A marker-dense physical map of the Bradyrhizobium japonicum genome. Genome Research. 11: 1434-40. PMID 11483585 DOI: 10.1101/Gr.185001 |
0.371 |
|
| 2001 |
Mao L, Begum D, Goff SA, Wing RA. Sequence and analysis of the tomato JOINTLESS locus. Plant Physiology. 126: 1331-40. PMID 11457984 DOI: 10.1104/Pp.126.3.1331 |
0.477 |
|
| 2001 |
Yang ZN, Ye XR, Choi S, Molina J, Moonan F, Wing RA, Roose ML, Mirkov TE. Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf Genome. 44: 382-393. PMID 11444697 DOI: 10.1139/Gen-44-3-382 |
0.399 |
|
| 2001 |
Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA. A framework for sequencing the rice genome. Novartis Foundation Symposium. 236: 13-24; discussion 24. PMID 11387975 DOI: 10.1002/9780470515778.Ch3 |
0.429 |
|
| 2001 |
Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L. Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library Molecular and General Genetics. 265: 118-125. PMID 11370857 DOI: 10.1007/S004380000382 |
0.4 |
|
| 2001 |
Luo M, Wang YH, Frisch D, Joobeur T, Wing RA, Dean RA. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2) Genome. 44: 154-162. PMID 11341724 DOI: 10.1139/Gen-44-2-154 |
0.323 |
|
| 2001 |
Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH. Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation. Plant Physiology. 125: 1325-41. PMID 11244113 DOI: 10.1104/Pp.125.3.1325 |
0.434 |
|
| 2001 |
Tomkins JP, Peterson DG, Yang TJ, Main D, Wilkins TA, Paterson AH, Wing RA. Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development Molecular Breeding. 8: 255-261. DOI: 10.1023/A:1013798716098 |
0.418 |
|
| 2000 |
Yuan Q, Liang F, Hsiao J, Zismann V, Benito MI, Quackenbush J, Wing R, Buell R. Anchoring of Rice BAC clones to the Rice Genetic Map in silico. Nucleic Acids Research. 28: 3636-3641. PMID 10982886 DOI: 10.1093/Nar/28.18.3636 |
0.352 |
|
| 2000 |
Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA. Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Research. 10: 982-90. PMID 10899147 DOI: 10.1101/Gr.10.7.982 |
0.442 |
|
| 2000 |
Lin YR, Draye X, Qian X, Ren S, Zhu LH, Tomkins J, Wing RA, Li Z, Paterson AH. Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method Nucleic Acids Research. 28: E23. PMID 10710440 DOI: 10.1093/Nar/28.7.E23 |
0.308 |
|
| 2000 |
Budiman MA, Mao L, Wood TC, Wing RA. A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing. Genome Research. 10: 129-136. DOI: 10.1101/Gr.10.1.129 |
0.363 |
|
| 2000 |
Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes Theoretical and Applied Genetics. 101: 1093-1099. DOI: 10.1007/S001220051584 |
0.349 |
|
| 1999 |
Tomkins JP, Miller-Smith H, Sasinowski M, Choi S, Sasinowska H, Verce MF, Freedman DL, Dean RA, Wing RA. Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs Microbial and Comparative Genomics. 4: 203-217. PMID 10587947 DOI: 10.1089/Omi.1.1999.4.203 |
0.467 |
|
| 1999 |
Tomkins JP, Mahalingam R, Smith H, Goicoechea JL, Knap HT, Wing RA. A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance Plant Molecular Biology. 41: 25-32. PMID 10561065 DOI: 10.1023/A:1006277417789 |
0.378 |
|
| 1999 |
Lijavetzky D, Muzzi G, Wicker T, Keller B, Wing R, Dubcovsky J. Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat Genome. 42: 1176-1182. DOI: 10.1139/G99-076 |
0.373 |
|
| 1997 |
Zhu H, Choi S, Johnston AK, Wing RA, Dean RA. A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning Fungal Genetics and Biology. 21: 337-347. PMID 9290247 DOI: 10.1006/Fgbi.1997.0996 |
0.401 |
|
| 1997 |
Chen M, Sanmiguel P, De Oliveira AC, Woo SS, Zhang H, Wing RA, Bennetzen JL. Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes Proceedings of the National Academy of Sciences of the United States of America. 94: 3431-3435. PMID 9096411 DOI: 10.1073/Pnas.94.7.3431 |
0.321 |
|
| 1997 |
Zhang H, Wing RA. Plant Molecular Biology. 35: 115-127. DOI: 10.1023/A:1005733909099 |
0.35 |
|
| 1996 |
Avramova Z, Tikhonov A, SanMiguel P, Jin YK, Liu C, Woo SS, Wing RA, Bennetzen JL. Gene identification in a complex chromosomal continuum by local genomic cross-referencing Plant Journal. 10: 1163-1168. PMID 9011097 DOI: 10.1046/J.1365-313X.1996.10061163.X |
0.472 |
|
| 1996 |
Zhang H, Choi S, Woo S, Li Z, Wing R. Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population Molecular Breeding. 2. DOI: 10.1007/Bf00171348 |
0.389 |
|
| 1995 |
Cai L, Taylor JF, Wing RA, Gallagher DS, Woo SS, Davis SK. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 29: 413-25. PMID 8666390 DOI: 10.1006/Geno.1995.9986 |
0.352 |
|
| 1995 |
Zhao Xinping, Wing RA, Paterson AH. Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.) Genome. 38: 1177-1188. PMID 8654914 DOI: 10.1139/G95-156 |
0.366 |
|
| 1995 |
Choi S, Creelman RA, Mullet JE, Wing RA. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana Plant Molecular Biology Reporter. 13: 124-128. DOI: 10.1007/Bf02668782 |
0.358 |
|
| 1994 |
Woo Ss, Jiang J, Gill BS, Paterson AH, Wing RA. Construction and characterization of bacterial artificial chromosome library of Sorghum bicolor Nucleic Acids Research. 22: 4922-4931. PMID 7800481 DOI: 10.1093/Nar/22.23.4922 |
0.347 |
|
| 1994 |
Chittenden LM, Schertz KF, Lin YR, Wing RA, Paterson AH. A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments Theoretical and Applied Genetics: International Journal of Plant Breeding Research. 87: 925-933. DOI: 10.1007/Bf00225786 |
0.306 |
|
| 1993 |
Paterson AH, Wing RA. Genome mapping in plants Current Opinion in Biotechnology. 4: 142-147. DOI: 10.1016/0958-1669(93)90114-C |
0.337 |
|
| 1990 |
Wing RA, Yamaguchi J, Larabell SK, Ursin VM, McCormick S. Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia Plant Molecular Biology. 14: 17-28. PMID 1983191 DOI: 10.1007/Bf00015651 |
0.363 |
|
| 1989 |
Twell D, Wing R, Yamaguchi J, McCormick S. Isolation and expression of an anther-specific gene from tomato. Molecular & General Genetics : Mgg. 217: 240-5. PMID 2770694 DOI: 10.1007/Bf02464887 |
0.358 |
|
| Show low-probability matches. |