Rod A. Wing - Publications

Affiliations: 
Biological Sciences University of Arizona at Tucson, Tucson, AZ, United States 

218 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Liu J, Chen S, Liu M, Chen Y, Fan W, Lee S, Xiao H, Kudrna D, Li Z, Chen X, Peng Y, Tian K, Zhang B, Wing RA, Zhang J, et al. Full-Length Transcriptome Sequencing Reveals Alternative Splicing and lncRNA Regulation during Nodule Development in . International Journal of Molecular Sciences. 23. PMID 35806374 DOI: 10.3390/ijms23137371  0.355
2022 Zhou Y, Zhang C, Zhang L, Ye Q, Liu N, Wang M, Long G, Fan W, Long M, Wing RA. Gene fusion as an important mechanism to generate new genes in the genus Oryza. Genome Biology. 23: 130. PMID 35706016 DOI: 10.1186/s13059-022-02696-w  0.736
2022 Athiyannan N, Abrouk M, Boshoff WHP, Cauet S, Rodde N, Kudrna D, Mohammed N, Bettgenhaeuser J, Botha KS, Derman SS, Wing RA, Prins R, Krattinger SG. Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning. Nature Genetics. 54: 227-231. PMID 35288708 DOI: 10.1038/s41588-022-01022-1  0.41
2022 Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, et al. Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics. G3 (Bethesda, Md.). PMID 35188189 DOI: 10.1093/g3journal/jkac017  0.476
2021 Song JM, Xie WZ, Wang S, Guo YX, Koo DH, Kudrna D, Gong C, Huang Y, Feng JW, Zhang W, Zhou Y, Zuccolo A, Long E, Lee S, Talag J, ... ... Wing RA, et al. Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice. Molecular Plant. PMID 34171480 DOI: 10.1016/j.molp.2021.06.018  0.466
2021 de Freitas KEJ, Dos Santos RS, Busanello C, de Carvalho Victoria F, Lopes JL, Wing RA, de Oliveira AC. () Evolution in the Genus . Plants (Basel, Switzerland). 10. PMID 34070565 DOI: 10.3390/plants10061057  0.406
2021 Wu Z, Liu H, Zhan W, Yu Z, Qin E, Liu S, Yang T, Xiang N, Kudrna D, Chen Y, Lee S, Li G, Wing RA, Liu J, Xiong H, et al. The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis. Plant Biotechnology Journal. PMID 33768699 DOI: 10.1111/pbi.13586  0.378
2021 Yu H, Lin T, Meng X, Du H, Zhang J, Liu G, Chen M, Jing Y, Kou L, Li X, Gao Q, Liang Y, Liu X, Fan Z, Liang Y, ... ... Wing RA, et al. A route to de novo domestication of wild allotetraploid rice. Cell. PMID 33539781 DOI: 10.1016/j.cell.2021.01.013  0.447
2021 Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, ... ... Wing RA, et al. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. PMID 33505029 DOI: 10.1038/s41586-020-03127-1  0.385
2020 Paritosh K, Yadava SK, Singh P, Bhayana L, Mukhopadhyay A, Gupta V, Bisht NC, Zhang J, Kudrna DA, Copetti D, Wing RA, Reddy VB, Pradhan AK, Pental D. A chromosome-scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes. Plant Biotechnology Journal. PMID 33073461 DOI: 10.1111/pbi.13492  0.37
2020 Mussurova S, Al-Bader N, Zuccolo A, Wing RA. Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice. Frontiers in Plant Science. 11: 579980. PMID 33072154 DOI: 10.3389/fpls.2020.579980  0.425
2020 Park HS, Jayakodi M, Lee SH, Jeon JH, Lee HO, Park JY, Moon BC, Kim CK, Wing RA, Newmaster SG, Kim JY, Yang TJ. Mitochondrial plastid DNA can cause DNA barcoding paradox in plants. Scientific Reports. 10: 6112. PMID 32273595 DOI: 10.1038/S41598-020-63233-Y  0.334
2020 Zhou Y, Chebotarov D, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez LJ, Franco N, Alexandrov N, Hamilton NRS, Leung H, ... ... Wing RA, et al. A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific Data. 7: 113. PMID 32265447 DOI: 10.1038/S41597-020-0438-2  0.369
2020 Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, ... ... Wing R, et al. Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels. Genome Biology and Evolution. PMID 32125373 DOI: 10.1093/Gbe/Evaa037  0.434
2020 Flynn JM, Long M, Wing RA, Clark AG. Evolutionary dynamics of abundant 7 bp satellites in the genome of Drosophila virilis. Molecular Biology and Evolution. PMID 31960929 DOI: 10.1093/Molbev/Msaa010  0.629
2020 McNally KL, Mauleon RP, Chebotarov D, Klassen SP, Kohli A, Ye G, Leung H, Hamilton RS, Wing RA. Mass genome sequencing of crops and wild relatives to accelerate crop breeding: the digital rice genebank Iop Conference Series: Earth and Environmental Science. 482: 012005. DOI: 10.1088/1755-1315/482/1/012005  0.359
2019 Jain R, Jenkins J, Shu S, Chern M, Martin JA, Copetti D, Duong PQ, Pham NT, Kudrna DA, Talag J, Schackwitz WS, Lipzen AM, Dilworth D, Bauer D, Grimwood J, ... ... Wing RA, et al. Genome sequence of the model rice variety KitaakeX. Bmc Genomics. 20: 905. PMID 31775618 DOI: 10.1186/S12864-019-6262-4  0.403
2019 Hazzouri KM, Gros-Balthazard M, Flowers JM, Copetti D, Lemansour A, Lebrun M, Masmoudi K, Ferrand S, Dhar MI, Fresquez ZA, Rosas U, Zhang J, Talag J, Lee S, Kudrna D, ... ... Wing RA, et al. Genome-wide association mapping of date palm fruit traits. Nature Communications. 10: 4680. PMID 31615981 DOI: 10.1038/S41467-019-12604-9  0.489
2019 Chen E, Huang X, Tian Z, Wing RA, Han B. The Genomics of Species Provides Insights into Rice Domestication and Heterosis. Annual Review of Plant Biology. 70: 639-665. PMID 31035826 DOI: 10.1146/Annurev-Arplant-050718-100320  0.468
2019 Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Structural variants in 3000 rice genomes. Genome Research. PMID 30992303 DOI: 10.1101/Gr.241240.118  0.454
2019 Zhang L, Ren Y, Yang T, Li G, Chen J, Gschwend AR, Yu Y, Hou G, Zi J, Zhou R, Wen B, Zhang J, Chougule K, Wang M, Copetti D, ... ... Wing RA, et al. Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution. PMID 30858588 DOI: 10.1038/S41559-019-0822-5  0.776
2019 Mangu VR, Ratnasekera D, Yabes JC, Wing RA, Baisakh N. Functional screening of genes from a halophyte wild rice relative Porteresia coarctata in Arabidopsis model identifies candidate genes involved in salt tolerance Current Plant Biology. 18: 100107. DOI: 10.1016/J.Cpb.2019.100107  0.344
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  0.729
2018 Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M. Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric regions. The Plant Cell. PMID 29967288 DOI: 10.1105/Tpc.18.00163  0.491
2018 Wing RA, Purugganan MD, Zhang Q. The rice genome revolution: from an ancient grain to Green Super Rice. Nature Reviews. Genetics. PMID 29872215 DOI: 10.1038/S41576-018-0024-Z  0.401
2018 Lv S, Wu W, Wang M, Meyer RS, Ndjiondjop MN, Tan L, Zhou H, Zhang J, Fu Y, Cai H, Sun C, Wing RA, Zhu Z. Genetic control of seed shattering during African rice domestication. Nature Plants. 4: 331-337. PMID 29872176 DOI: 10.1038/S41477-018-0164-3  0.738
2018 Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, ... ... Wing RA, et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature. PMID 29695866 DOI: 10.1038/S41586-018-0063-9  0.48
2018 Kim NH, Jayakodi M, Lee SC, Choi BS, Jang W, Lee J, Kim HH, Waminal NE, Lakshmanan M, Van Nguyen B, Lee YS, Park HS, Koo HJ, Park JY, Perumal S, ... ... Wing RA, et al. Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal. PMID 29604169 DOI: 10.1111/Pbi.12926  0.448
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Wing RA, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  0.768
2017 Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ. Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078296 DOI: 10.1073/Pnas.1706367114  0.482
2017 Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, ... ... Wing R, et al. Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology & Evolution. 1: 119. PMID 28812690 DOI: 10.1038/S41559-017-0119  0.303
2017 Wu W, Liu X, Wang M, Meyer RS, Luo X, Ndjiondjop MN, Tan L, Zhang J, Wu J, Cai H, Sun C, Wang X, Wing RA, Zhu Z. A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants. 3: 17064. PMID 28481332 DOI: 10.1038/Nplants.2017.64  0.708
2017 Dos Santos RS, Farias DD, Pegoraro C, Rombaldi CV, Fukao T, Wing RA, de Oliveira AC. Evolutionary analysis of the SUB1 locus across the Oryza genomes. Rice (New York, N.Y.). 10: 4. PMID 28176282 DOI: 10.1186/S12284-016-0140-3  0.354
2017 Choi JY, Platts AE, Fuller DQ, Hsing YI, Wing RA, Purugganan MD. The rice paradox: Multiple origins but single domestication in Asian rice. Molecular Biology and Evolution. PMID 28087768 DOI: 10.1093/Molbev/Msx049  0.327
2017 Eizenga GC, Sanchez PL, Jackson AK, Edwards JD, Hurwitz BL, Wing RA, Kudrna DA. Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population Molecular Breeding. 37: 135. DOI: 10.1007/S11032-017-0734-5  0.32
2016 Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, et al. Rice SNP-seek database update: new SNPs, indels, and queries. Nucleic Acids Research. PMID 27899667 DOI: 10.1093/Nar/Gkw1135  0.301
2016 Brozynska M, Copetti D, Furtado A, Wing RA, Crayn D, Fox G, Ishikawa R, Henry RJ. Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal. PMID 27889940 DOI: 10.1111/Pbi.12674  0.505
2016 Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16189. PMID 27819656 DOI: 10.1038/nplants.2016.189  0.408
2016 Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, ... ... Wing R, et al. The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants. 2: 16167. PMID 27797353 DOI: 10.1038/Nplants.2016.167  0.497
2016 van Andel TR, Meyer RS, Aflitos SA, Carney JA, Veltman MA, Copetti D, Flowers JM, Havinga RM, Maat H, Purugganan MD, Wing RA, Schranz ME. Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants. 2: 16149. PMID 27694825 DOI: 10.1038/Nplants.2016.149  0.393
2016 Copetti D, Wing RA. The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes. Molecular Plant. PMID 27693675 DOI: 10.1016/J.Molp.2016.09.006  0.349
2016 Zhang J, Chen LL, Sun S, Kudrna D, Copetti D, Li W, Mu T, Jiao WB, Xing F, Lee S, Talag J, Song JM, Du B, Xie W, Luo M, ... ... Wing RA, et al. Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data. Scientific Data. 3: 160076. PMID 27622467 DOI: 10.1038/Sdata.2016.76  0.378
2016 Wicker T, Yu Y, Haberer G, Mayer KF, Marri PR, Rounsley S, Chen M, Zuccolo A, Panaud O, Wing RA, Roffler S. DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications. 7: 12790. PMID 27599761 DOI: 10.1038/Ncomms12790  0.336
2016 Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, ... ... Wing RA, et al. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535938 DOI: 10.1073/Pnas.1611012113  0.496
2016 Zhang J, Kudrna D, Mu T, Li W, Copetti D, Yu Y, Goicoechea JL, Lei Y, Wing RA. Genome Puzzle Master (GPM) - An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics (Oxford, England). PMID 27318200 DOI: 10.1093/Bioinformatics/Btw370  0.355
2016 Ray S, Bose LK, Ray J, Ngangkham U, Katara JL, Samantaray S, Behera L, Anumalla M, Singh ON, Chen M, Wing RA, Mohapatra T. Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics : Mgg. PMID 27299359 DOI: 10.1007/S00438-016-1214-Z  0.43
2016 Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/S13059-016-0954-8  0.421
2016 Bai Z, Chen J, Liao Y, Wang M, Liu R, Ge S, Wing RA, Chen M. The impact and origin of copy number variations in the Oryza species. Bmc Genomics. 17: 261. PMID 27025496 DOI: 10.1186/S12864-016-2589-2  0.468
2016 Wendel JF, Jackson SA, Meyers BC, Wing RA. Evolution of plant genome architecture. Genome Biology. 17: 37. PMID 26926526 DOI: 10.1186/S13059-016-0908-1  0.382
2015 De Vega JJ, Ayling S, Hegarty M, Kudrna D, Goicoechea JL, Ergon Å, Rognli OA, Jones C, Swain M, Geurts R, Lang C, Mayer KF, Rössner S, Yates S, Webb KJ, ... ... Wing RA, et al. Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports. 5: 17394. PMID 26617401 DOI: 10.1038/Srep17394  0.484
2015 Kim K, Lee SC, Lee J, Yu Y, Yang K, Choi BS, Koh HJ, Waminal NE, Choi HI, Kim NH, Jang W, Park HS, Lee J, Lee HO, Joh HJ, ... ... Wing RA, et al. Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports. 5: 15655. PMID 26506948 DOI: 10.1038/Srep15655  0.44
2015 Wing RA. Harvesting rice's dispensable genome. Genome Biology. 16: 217. PMID 26429765 DOI: 10.1186/S13059-015-0787-X  0.385
2015 Wicker T, Wing RA, Schubert I. Recurrent sequence exchange between homeologous grass chromosomes. The Plant Journal : For Cell and Molecular Biology. PMID 26408412 DOI: 10.1111/Tpj.13040  0.341
2015 Zhang Y, Zhang S, Liu H, Fu B, Li L, Xie M, Song Y, Li X, Cai J, Wan W, Kui L, Huang H, Lyu J, Dong Y, Wang W, ... ... Wing RA, et al. Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant. PMID 26358679 DOI: 10.1016/J.Molp.2015.08.006  0.721
2015 Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, ... ... Wing R, et al. Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. The Plant Journal : For Cell and Molecular Biology. PMID 26252423 DOI: 10.1111/Tpj.12959  0.483
2015 Sanderson MJ, Copetti D, Búrquez A, Bustamante E, Charboneau JL, Eguiarte LE, Kumar S, Lee HO, Lee J, McMahon M, Steele K, Wing R, Yang TJ, Zwickl D, Wojciechowski MF. Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat. American Journal of Botany. 102: 1115-27. PMID 26199368 DOI: 10.3732/Ajb.1500184  0.461
2015 Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, ... ... Wing RA, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/S12864-015-1762-3  0.427
2015 Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/Fpls.2015.00216  0.442
2014 Geering AD, Maumus F, Copetti D, Choisne N, Zwickl DJ, Zytnicki M, McTaggart AR, Scalabrin S, Vezzulli S, Wing RA, Quesneville H, Teycheney PY. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications. 5: 5269. PMID 25381880 DOI: 10.1038/Ncomms6269  0.419
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, ... ... Wing RA, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/Ng.3044  0.764
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, ... ... Wing RA, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/Ng.3008  0.51
2014 Zwickl DJ, Stein JC, Wing RA, Ware D, Sanderson MJ. Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3. Systematic Biology. 63: 645-59. PMID 24721692 DOI: 10.1093/Sysbio/Syu027  0.421
2014 Wang X, Kudrna DA, Pan Y, Wang H, Liu L, Lin H, Zhang J, Song X, Goicoechea JL, Wing RA, Zhang Q, Luo M. Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics. 196: 937-49. PMID 24424778 DOI: 10.1534/Genetics.113.159970  0.388
2014 Pan Y, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M. Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. The Plant Journal : For Cell and Molecular Biology. 77: 795-805. PMID 24330235 DOI: 10.1111/Tpj.12412  0.338
2014 Jacquemin J, Ammiraju JS, Haberer G, Billheimer DD, Yu Y, Liu LC, Rivera LF, Mayer K, Chen M, Wing RA. Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant. 7: 642-56. PMID 24214894 DOI: 10.1093/Mp/Sst149  0.448
2013 Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/Science.1241130  0.409
2013 Wang C, Shi X, Liu L, Li H, Ammiraju JS, Kudrna DA, Xiong W, Wang H, Dai Z, Zheng Y, Lai J, Jin W, Messing J, Bennetzen JL, Wing RA, et al. Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics. 195: 723-37. PMID 24037269 DOI: 10.1534/Genetics.113.157115  0.459
2013 Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, et al. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology. 83: 177-89. PMID 23708951 DOI: 10.1007/S11103-013-0077-5  0.429
2013 Zhang Q, Wing R. Genome studies and molecular genetics: understanding the functional genome based on the rice model. Current Opinion in Plant Biology. 16: 129-32. PMID 23706861 DOI: 10.1016/J.Pbi.2013.04.003  0.379
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/Gbe/Evt071  0.709
2013 Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X. The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers in Plant Science. 4: 46. PMID 23518688 DOI: 10.3389/Fpls.2013.00046  0.418
2013 Jacquemin J, Bhatia D, Singh K, Wing RA. The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology. 16: 147-56. PMID 23518283 DOI: 10.1016/J.Pbi.2013.02.014  0.35
2013 Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, ... ... Wing RA, et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications. 4: 1595. PMID 23481403 DOI: 10.1038/Ncomms2596  0.506
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110  0.314
2013 Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR. Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. Bmc Plant Biology. 13: 27. PMID 23410187 DOI: 10.1186/1471-2229-13-27  0.332
2013 Horvath DP, Kudrna D, Talag J, Anderson JV, Chao WS, Wing R, Foley ME, Doǧramaci M. BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs Weed Science. 61: 303-309. DOI: 10.1614/Ws-D-12-00175.1  0.477
2012 Yang L, Liu T, Li B, Sui Y, Chen J, Shi J, Wing RA, Chen M. Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes. Plos One. 7: e50236. PMID 23185584 DOI: 10.1371/Journal.Pone.0050236  0.474
2012 Figueira TR, Okura V, Rodrigues da Silva F, Jose da Silva M, Kudrna D, Ammiraju JS, Talag J, Wing R, Arruda P. A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. Bmc Research Notes. 5: 185. PMID 22524198 DOI: 10.1186/1756-0500-5-185  0.407
2012 Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.). G3 (Bethesda, Md.). 2: 321-9. PMID 22413085 DOI: 10.1534/G3.111.001834  0.37
2012 Li HJ, Li XH, Xiao JH, Wing RA, Wang SP. Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice. Molecular Plant. 5: 281-90. PMID 21930802 DOI: 10.1093/Mp/Ssr079  0.441
2011 Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/Tpc.111.085605  0.479
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Wing RA, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/Gb-2011-12-5-R48  0.415
2011 Jacquemin J, Chaparro C, Laudié M, Berger A, Gavory F, Goicoechea JL, Wing RA, Cooke R. Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species. Molecular Biology and Evolution. 28: 3139-50. PMID 21616911 DOI: 10.1093/Molbev/Msr144  0.547
2011 Blair MW, Hurtado N, Chavarro CM, Muñoz-Torres MC, Giraldo MC, Pedraza F, Tomkins J, Wing R. Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. Bmc Plant Biology. 11: 50. PMID 21426554 DOI: 10.1186/1471-2229-11-50  0.316
2011 Tian Z, Yu Y, Lin F, Yu Y, Sanmiguel PJ, Wing RA, McCouch SR, Ma J, Jackson SA. Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. Bmc Genomics. 12: 142. PMID 21385395 DOI: 10.1186/1471-2164-12-142  0.416
2011 Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J. Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. Bmc Genomics. 12: 137. PMID 21375742 DOI: 10.1186/1471-2164-12-137  0.461
2011 Song X, Goicoechea JL, Ammiraju JS, Luo M, He R, Lin J, Lee SJ, Sisneros N, Watts T, Kudrna DA, Golser W, Ashley E, Collura K, Braidotti M, Yu Y, ... ... Wing RA, et al. The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics. 187: 1023-30. PMID 21321134 DOI: 10.1534/Genetics.111.126540  0.453
2011 Lin J, Kudrna D, Wing RA. Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine & Biotechnology. 2011: 476723. PMID 21234344 DOI: 10.1155/2011/476723  0.353
2011 Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. The genome of Theobroma cacao Nature Genetics. 43: 101-108. PMID 21186351 DOI: 10.1038/Ng.736  0.464
2011 Gao D, Gong Z, Wing RA, Jiang J, Jackson SA. Molecular and Cytological Characterization of Centromeric Retrotransposons in a Wild Relative of Rice, Oryza granulata Tropical Plant Biology. 4: 217-227. DOI: 10.1007/S12042-011-9083-4  0.33
2010 Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, ... Wing RA, et al. An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. Plos One. 5: e13461. PMID 20976139 DOI: 10.1371/Journal.Pone.0013461  0.342
2010 Hurwitz BL, Kudrna D, Yu Y, Sebastian A, Zuccolo A, Jackson SA, Ware D, Wing RA, Stein L. Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 990-1003. PMID 20626650 DOI: 10.1111/J.1365-313X.2010.04293.X  0.509
2010 Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, ... ... Wing RA, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395  0.38
2010 Geraldes A, Rambo T, Wing RA, Ferrand N, Nachman MW. Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution. 27: 2437-40. PMID 20525900 DOI: 10.1093/Molbev/Msq139  0.394
2010 Sanyal A, Ammiraju JS, Lu F, Yu Y, Rambo T, Currie J, Kollura K, Kim HR, Chen J, Ma J, San Miguel P, Mingsheng C, Wing RA, Jackson SA. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Molecular Biology and Evolution. 27: 2487-506. PMID 20522726 DOI: 10.1093/Molbev/Msq133  0.455
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, ... ... Wing RA, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X  0.415
2010 Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL. Genomic structure and evolution of the Pi2/9 locus in wild rice species. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 121: 295-309. PMID 20229250 DOI: 10.1007/S00122-010-1310-0  0.517
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/Nature08670  0.508
2010 Cranston KA, Hurwitz B, Sanderson MJ, Ware D, Wing RA, Stein L. Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae) Systematic Botany. 35: 512-523. DOI: 10.1600/036364410792495872  0.449
2010 Ammiraju JSS, Song X, Luo M, Sisneros N, Angelova A, Kudrna D, Kim H, Yu Y, Goicoechea JL, Lorieux M, Kurata N, Brar D, Ware D, Jackson S, Wing RA. The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives Breeding Science. 60: 536-543. DOI: 10.1270/Jsbbs.60.536  0.454
2010 Argout X, Salse J, Aury JM, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Guiltinan M, Maximova S, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, ... ... Wing R, et al. Deciphering the genome structure and paleohistory of Theobroma cacao Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.4908.1  0.448
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Wing RA, et al. Erratum: Genome sequence of the palaeopolyploid soybean Nature. 465: 120-120. DOI: 10.1038/Nature08957  0.39
2010 Gill N, SanMiguel P, Dhillon BDS, Abernathy B, Kim H, Stein L, Ware D, Wing R, Jackson SA. Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents Rice. 3: 251-269. DOI: 10.1007/S12284-010-9054-7  0.411
2010 Goicoechea JL, Ammiraju JSS, Marri PR, Chen M, Jackson S, Yu Y, Rounsley S, Wing RA. The future of rice genomics: Sequencing the collective Oryza genome Rice. 3: 89-97. DOI: 10.1007/S12284-010-9052-9  0.428
2010 Zuccolo A, Sebastian A, Yu Y, Jackson S, Rounsley S, Billheimer D, Wing RA. Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima Rice. 3: 242-250. DOI: 10.1007/S12284-010-9046-7  0.31
2009 Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA. Species trees from highly incongruent gene trees in rice. Systematic Biology. 58: 489-500. PMID 20525603 DOI: 10.1093/Sysbio/Syp054  0.357
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Wing RA, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.495
2009 Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/Journal.Pgen.1000711  0.328
2009 Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, ... ... Wing RA, et al. The physical and genetic framework of the maize B73 genome. Plos Genetics. 5: e1000715. PMID 19936061 DOI: 10.1371/Journal.Pgen.1000715  0.324
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Wing RA, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.461
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X  0.428
2009 Nah G, Pagliarulo CL, Mohr PG, Luo M, Sisneros N, Yu Y, Collura K, Currie J, Goicoechea JL, Wing RA, Schumaker KS. Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics. 94: 196-203. PMID 19481598 DOI: 10.1016/J.Ygeno.2009.05.007  0.357
2009 Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA. Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proceedings of the National Academy of Sciences of the United States of America. 106: 9063-8. PMID 19451630 DOI: 10.1073/Pnas.0900194106  0.38
2009 Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 2071-6. PMID 19164767 DOI: 10.1073/Pnas.0812798106  0.557
2009 Rounsley S, Marri PR, Yu Y, He R, Sisneros N, Goicoechea JL, Lee SJ, Angelova A, Kudrna D, Luo M, Affourtit J, Desany B, Knight J, Niazi F, Egholm M, ... Wing RA, et al. De novo next generation sequencing of plant genomes Rice. 2: 35-43. DOI: 10.1007/S12284-009-9025-Z  0.343
2008 Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/Mp/Ssn050  0.729
2008 Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, et al. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. Bmc Genomics. 9: 621. PMID 19099592 DOI: 10.1186/1471-2164-9-621  0.425
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, ... ... Wing RA, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727  0.511
2008 Le Cunff L, Garsmeur O, Raboin LM, Pauquet J, Telismart H, Selvi A, Grivet L, Philippe R, Begum D, Deu M, Costet L, Wing R, Glaszmann JC, D'Hont A. Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115). Genetics. 180: 649-60. PMID 18757946 DOI: 10.1534/Genetics.108.091355  0.324
2008 Wei F, Wing RA. A fruitful outcome to the papaya genome project. Genome Biology. 9: 227. PMID 18557995 DOI: 10.1186/Gb-2008-9-6-227  0.364
2008 Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF. A phylogenetic analysis of indel dynamics in the cotton genus. Molecular Biology and Evolution. 25: 1415-28. PMID 18400789 DOI: 10.1093/Molbev/Msn085  0.404
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/Gb-2008-9-3-402  0.388
2008 Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, ... ... Wing RA, et al. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biology. 9: R45. PMID 18304353 DOI: 10.1186/Gb-2008-9-2-R45  0.358
2008 Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Wing RA, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/Nar/Gkm978  0.43
2008 Roulin A, Piegu B, Wing RA, Panaud O. Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 53: 950-9. PMID 18088314 DOI: 10.1111/J.1365-313X.2007.03388.X  0.396
2008 Qu S, Desai A, Wing R, Sundaresan V. A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiology. 146: 189-99. PMID 17993541 DOI: 10.1104/Pp.107.111427  0.343
2008 Maughan PJ, Sisneros N, Luo M, Kudrna D, Ammiraju JSS, Wing RA. Construction of an Amaranthus hypochondriacus bacterial artificial chromosome library and genomic sequencing of herbicide target genes Crop Science. 48: S85-S94. DOI: 10.2135/Cropsci2007.08.0434Tpg  0.41
2008 Meier S, Gehring C, MacPherson CR, Kaur M, Maqungo M, Reuben S, Muyanga S, Shih MD, Wei FJ, Wanchana S, Mauleon R, Radovanovic A, Bruskiewich R, Tanaka T, Mohanty B, ... ... Wing R, et al. The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network Rice. 1: 177-187. DOI: 10.1007/S12284-008-9017-4  0.349
2008 Zuccolo A, Ammiraju JSS, Kim H, Sanyal A, Jackson S, Wing RA. Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza Rice. 1: 85-99. DOI: 10.1007/S12284-008-9002-Y  0.362
2008 Schlueter JA, Goicoechea JL, Collura K, Gill N, Lin J, Yu Y, Kudrna D, Zuccolo A, Vallejos CE, Muñoz-Torres M, Blair MW, Tohme J, Tomkins J, McClean P, Wing RA, et al. BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome Tropical Plant Biology. 1: 40-48. DOI: 10.1007/S12042-007-9003-9  0.346
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Wing RA, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.718
2007 Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/J.1365-313X.2007.03242.X  0.412
2007 Zuccolo A, Sebastian A, Talag J, Yu Y, Kim H, Collura K, Kudrna D, Wing RA. Transposable element distribution, abundance and role in genome size variation in the genus Oryza. Bmc Evolutionary Biology. 7: 152. PMID 17727727 DOI: 10.1186/1471-2148-7-152  0.353
2007 Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, ... ... Wing RA, et al. Physical and genetic structure of the maize genome reflects its complex evolutionary history. Plos Genetics. 3: e123. PMID 17658954 DOI: 10.1371/Journal.Pgen.0030123  0.438
2007 Venu RC, Jia Y, Gowda M, Jia MH, Jantasuriyarat C, Stahlberg E, Li H, Rhineheart A, Boddhireddy P, Singh P, Rutger N, Kudrna D, Wing R, Nelson JC, Wang GL. RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection. Molecular Genetics and Genomics : Mgg. 278: 421-31. PMID 17579886 DOI: 10.1007/S00438-007-0260-Y  0.395
2007 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). The Plant Journal : For Cell and Molecular Biology. 50: 995-1006. PMID 17461788 DOI: 10.1111/J.1365-313X.2007.03102.X  0.416
2007 Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics. 176: 379-90. PMID 17339227 DOI: 10.1534/Genetics.106.068783  0.414
2007 Ma J, Wing RA, Bennetzen JL, Jackson SA. Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics : Tig. 23: 134-9. PMID 17275131 DOI: 10.1016/J.Tig.2007.01.004  0.302
2007 Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, ... ... Wing RA, et al. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research. 17: 175-83. PMID 17210932 DOI: 10.1101/Gr.5509507  0.502
2007 Liang H, Fang EG, Tomkins JP, Luo M, Kudrna D, Kim HR, Arumuganathan K, Zhao S, Leebens-Mack J, Schlarbaum SE, Banks JA, Depamphilis CW, Mandoli DF, Wing RA, Carlson JE. Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis Tree Genetics and Genomes. 3: 215-225. DOI: 10.1007/S11295-006-0057-X  0.432
2007 Matsumoto T, Wing RA, Han B, Sasaki T. Rice genome sequence: The foundation for understanding the genetic systems Rice Functional Genomics: Challenges, Progress and Prospects. 5-20. DOI: 10.1007/0-387-48914-2_2  0.356
2006 Adema CM, Luo MZ, Hanelt B, Hertel LA, Marshall JJ, Zhang SM, DeJong RJ, Kim HR, Kudrna D, Wing RA, Soderlund C, Knight M, Lewis FA, Caldeira RL, Jannotti-Passos LK, et al. A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. Memã³Rias Do Instituto Oswaldo Cruz. 101: 167-77. PMID 17308766 DOI: 10.1590/S0074-02762006000900027  0.428
2006 Gowda M, Venu RC, Raghupathy MB, Nobuta K, Li H, Wing R, Stahlberg E, Couglan S, Haudenschild CD, Dean R, Nahm BH, Meyers BC, Wang GL. Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. Bmc Genomics. 7: 310. PMID 17156450 DOI: 10.1186/1471-2164-7-310  0.444
2006 Piegu B, Guyot R, Picault N, Roulin A, Sanyal A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research. 16: 1262-9. PMID 16963705 DOI: 10.1101/Gr.5290206  0.426
2006 Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research. 16: 1252-61. PMID 16954538 DOI: 10.1101/Gr.5282906  0.426
2006 Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, ... ... Wing RA, et al. Uneven chromosome contraction and expansion in the maize genome. Genome Research. 16: 1241-51. PMID 16902087 DOI: 10.1101/Gr.5338906  0.447
2006 Cunningham C, Hikima J, Jenny MJ, Chapman RW, Fang GC, Saski C, Lundqvist ML, Wing RA, Cupit PM, Gross PS, Warr GW, Tomkins JP. New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas). Marine Biotechnology (New York, N.Y.). 8: 521-33. PMID 16896533 DOI: 10.1007/S10126-006-6013-9  0.413
2006 Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, ... ... Wing RA, et al. Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. Bmc Genomics. 7: 199. PMID 16895597 DOI: 10.1186/1471-2164-7-199  0.449
2006 Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794  0.412
2006 Luo M, Kim H, Kudrna D, Sisneros NB, Lee SJ, Mueller C, Collura K, Zuccolo A, Buckingham EB, Grim SM, Yanagiya K, Inoko H, Shiina T, Flajnik MF, Wing RA, et al. Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. Bmc Genomics. 7: 106. PMID 16672057 DOI: 10.1186/1471-2164-7-106  0.373
2006 Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, ... ... Wing R, et al. A global assembly of cotton ESTs. Genome Research. 16: 441-50. PMID 16478941 DOI: 10.1101/Gr.4602906  0.419
2006 Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, ... ... Wing RA, et al. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research. 16: 140-7. PMID 16344555 DOI: 10.1101/Gr.3766306  0.455
2006 Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics. 87: 181-90. PMID 16321505 DOI: 10.1016/J.Ygeno.2005.09.005  0.386
2006 Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP. Erratum to “Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region” [Genomics 87 (2006) 181–190] Genomics. 87: 678-679. DOI: 10.1016/J.Ygeno.2006.01.008  0.317
2006 Lin YR, Chow TY, Luo M, Kudrna D, Lin CC, Wing RA, Hsing YIC. Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research Plant Science. 170: 889-896. DOI: 10.1016/J.Plantsci.2005.12.016  0.445
2005 Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J. Structure and architecture of the maize genome. Plant Physiology. 139: 1612-24. PMID 16339807 DOI: 10.1104/Pp.105.068718  0.514
2005 Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, et al. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology. 59: 53-62. PMID 16217601 DOI: 10.1007/S11103-004-6237-X  0.387
2005 Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1596-607. PMID 16200416 DOI: 10.1007/S00122-005-0091-3  0.431
2005 Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, et al. Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology. 139: 869-84. PMID 16169961 DOI: 10.1104/Pp.105.066134  0.318
2005 Nelson WM, Bharti AK, Butler E, Wei F, Fuks G, Kim H, Wing RA, Messing J, Soderlund C. Whole-genome validation of high-information-content fingerprinting. Plant Physiology. 139: 27-38. PMID 16166258 DOI: 10.1104/Pp.105.061978  0.301
2005 Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, ... ... Wing RA, et al. Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proceedings of the National Academy of Sciences of the United States of America. 102: 13206-11. PMID 16141333 DOI: 10.1073/Pnas.0502365102  0.466
2005 Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, ... ... Wing RA, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/Gr.3869505  0.433
2005 Yang TJ, Lee S, Chang SB, Yu Y, de Jong H, Wing RA. In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma. 114: 103-17. PMID 15965704 DOI: 10.1007/S00412-005-0342-8  0.322
2005 Yang TJ, Yu Y, Chang SB, de Jong H, Oh CS, Ahn SN, Fang E, Wing RA. Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 467-78. PMID 15965650 DOI: 10.1007/S00122-005-2034-4  0.334
2005 Wang W, Tanurdzic M, Luo M, Sisneros N, Kim HR, Weng JK, Kudrna D, Mueller C, Arumuganathan K, Carlson J, Chapple C, de Pamphilis C, Mandoli D, Tomkins J, Wing RA, et al. Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. Bmc Plant Biology. 5: 10. PMID 15955246 DOI: 10.1186/1471-2229-5-10  0.405
2005 Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology. 138: 105-15. PMID 15888683 DOI: 10.1104/Pp.104.055624  0.424
2005 Horn R, Lecouls AC, Callahan A, Dandekar A, Garay L, McCord P, Howad W, Chan H, Verde I, Main D, Jung S, Georgi L, Forrest S, Mook J, Zhebentyayeva T, ... ... Wing R, et al. Candidate gene database and transcript map for peach, a model species for fruit trees. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 110: 1419-28. PMID 15846479 DOI: 10.1007/S00122-005-1968-X  0.411
2005 Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, ... ... Wing RA, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20  0.485
2005 Yu Y, Wing RA. Whole genome sequencing: Methodology and progress in cereals Cereal Genomics. 385-423. DOI: 10.1007/1-4020-2359-6_13  0.359
2004 Tomkins J, Fregene M, Main D, Kim H, Wing R, Tohme J. Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz). Plant Molecular Biology. 56: 555-61. PMID 15630619 DOI: 10.1007/S11103-004-5045-7  0.386
2004 Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA. Sequence composition and genome organization of maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 14349-54. PMID 15388850 DOI: 10.1073/Pnas.0406163101  0.504
2004 Thon MR, Martin SL, Goff S, Wing RA, Dean RA. BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology : Fg & B. 41: 657-66. PMID 15275661 DOI: 10.1016/J.Fgb.2004.02.003  0.333
2004 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Incongruent patterns of local and global genome size evolution in cotton. Genome Research. 14: 1474-82. PMID 15256507 DOI: 10.1101/Gr.2673204  0.48
2004 Hamblin MT, Mitchell SE, White GM, Gallego J, Kukatla R, Wing RA, Paterson AH, Kresovich S. Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor. Genetics. 167: 471-83. PMID 15166170 DOI: 10.1534/Genetics.167.1.471  0.326
2004 Singh NK, Raghuvanshi S, Srivastava SK, Gaur A, Pal AK, Dalal V, Singh A, Ghazi IA, Bhargav A, Yadav M, Dixit A, Batra K, Gaikwad K, Sharma TR, Mohanty A, ... ... Wing R, et al. Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny. Functional & Integrative Genomics. 4: 102-17. PMID 15085449 DOI: 10.1007/S10142-004-0109-Y  0.472
2004 Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology. 134: 960-8. PMID 15020760 DOI: 10.1104/Pp.103.034462  0.453
2004 Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Plant Physiology. 134: 1317-26. PMID 15020742 DOI: 10.1104/Pp.103.034538  0.349
2004 Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, ... ... Wing RA, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 166: 389-417. PMID 15020432 DOI: 10.1534/Genetics.166.1.389  0.4
2004 Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science (New York, N.Y.). 304: 304-7. PMID 15001715 DOI: 10.1126/Science.1095781  0.532
2003 Luo M, Wing RA. An improved method for plant BAC library construction Methods in Molecular Biology (Clifton, N.J.). 236: 3-20. PMID 14501055 DOI: 10.1385/1-59259-413-1:3  0.361
2003 Yang TJ, Yu Y, Nah G, Atkins M, Lee S, Frisch DA, Wing RA. Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 652-60. PMID 12783166 DOI: 10.1007/S00122-003-1302-4  0.38
2003 Georgi LL, Wang Y, Reighard GL, Mao L, Wing RA, Abbott AG. Comparison of peach and Arabidopsis genomic sequences: Fragmentary conservation of gene neighborhoods Genome. 46: 268-276. PMID 12723043 DOI: 10.1139/G03-004  0.479
2003 Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/Molbev/Msg065  0.417
2002 Wei F, Wing RA, Wise RP. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. The Plant Cell. 14: 1903-17. PMID 12172030 DOI: 10.1105/Tpc.002238  0.477
2002 Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, ... ... Wing R, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (New York, N.Y.). 296: 92-100. PMID 11935018 DOI: 10.1126/science.1068275  0.482
2002 Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, ... ... Wing RA, et al. An integrated physical and genetic map of the rice genome. The Plant Cell. 14: 537-45. PMID 11910002 DOI: 10.1105/Tpc.010485  0.394
2002 Wechter WP, Begum D, Presting G, Kim JJ, Wing RA, Kluepfel DA. Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R. Omics : a Journal of Integrative Biology. 6: 11-21. PMID 11881828 DOI: 10.1089/15362310252780807  0.347
2002 Martin SL, Blackmon BP, Rajagopalan R, Houfek TD, Sceeles RG, Denn SO, Mitchell TK, Brown DE, Wing RA, Dean RA. MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea. Nucleic Acids Research. 30: 121-4. PMID 11752272 DOI: 10.1093/Nar/30.1.121  0.38
2002 Tomkins JP, Davis G, Main D, Yim Y, Duru N, Musket T, Goicoechea JL, Frisch DA, Coe EH, Wing RA. Construction and Characterization of a Deep‐Coverage Bacterial Artificial Chromosome Library for Maize Crop Science. 42: 928-933. DOI: 10.2135/Cropsci2002.9280  0.343
2002 Roche D, Conner JA, Budiman MA, Frisch D, Wing R, Hanna WW, Ozias-Akins P. Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions Theoretical and Applied Genetics. 104: 804-812. DOI: 10.1007/s00122-001-0795-y  0.392
2001 Cheng Z, Buell CR, Wing RA, Gu M, Jiang J. Toward a cytological characterization of the rice genome Genome Research. 11: 2133-2141. PMID 11731505 DOI: 10.1101/Gr.194601  0.311
2001 Tomkins JP, Wood TC, Stacey MG, Loh JT, Judd A, Goicoechea JL, Stacey G, Sadowsky MJ, Wing RA. A marker-dense physical map of the Bradyrhizobium japonicum genome. Genome Research. 11: 1434-40. PMID 11483585 DOI: 10.1101/Gr.185001  0.356
2001 Mao L, Begum D, Goff SA, Wing RA. Sequence and analysis of the tomato JOINTLESS locus. Plant Physiology. 126: 1331-40. PMID 11457984 DOI: 10.1104/Pp.126.3.1331  0.457
2001 Yang ZN, Ye XR, Choi S, Molina J, Moonan F, Wing RA, Roose ML, Mirkov TE. Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf Genome. 44: 382-393. PMID 11444697 DOI: 10.1139/Gen-44-3-382  0.403
2001 Presting GG, Budiman MA, Wood T, Yu Y, Kim HR, Goicoechea JL, Fang E, Blackman B, Jiang J, Woo SS, Dean RA, Frisch D, Wing RA. A framework for sequencing the rice genome. Novartis Foundation Symposium. 236: 13-24; discussion 24. PMID 11387975 DOI: 10.1002/9780470515778.Ch3  0.402
2001 Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L. Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library Molecular and General Genetics. 265: 118-125. PMID 11370857 DOI: 10.1007/S004380000382  0.399
2001 Luo M, Wang YH, Frisch D, Joobeur T, Wing RA, Dean RA. Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2) Genome. 44: 154-162. PMID 11341724 DOI: 10.1139/Gen-44-2-154  0.311
2001 Draye X, Lin YR, Qian XY, Bowers JE, Burow GB, Morrell PL, Peterson DG, Presting GG, Ren SX, Wing RA, Paterson AH. Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation. Plant Physiology. 125: 1325-41. PMID 11244113 DOI: 10.1104/Pp.125.3.1325  0.412
2001 Tomkins JP, Peterson DG, Yang TJ, Main D, Wilkins TA, Paterson AH, Wing RA. Development of genomic resources for cotton (Gossypium hirsutum L.): BAC library construction, preliminary STC analysis, and identification of clones associated with fiber development Molecular Breeding. 8: 255-261. DOI: 10.1023/A:1013798716098  0.404
2000 Yuan Q, Liang F, Hsiao J, Zismann V, Benito MI, Quackenbush J, Wing R, Buell R. Anchoring of Rice BAC clones to the Rice Genetic Map in silico. Nucleic Acids Research. 28: 3636-3641. PMID 10982886 DOI: 10.1093/Nar/28.18.3636  0.337
2000 Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA. Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Research. 10: 982-90. PMID 10899147 DOI: 10.1101/Gr.10.7.982  0.421
2000 Budiman MA, Mao L, Wood TC, Wing RA. A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing. Genome Research. 10: 129-136. DOI: 10.1101/Gr.10.1.129  0.342
2000 Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes Theoretical and Applied Genetics. 101: 1093-1099. DOI: 10.1007/S001220051584  0.338
1999 Tomkins JP, Miller-Smith H, Sasinowski M, Choi S, Sasinowska H, Verce MF, Freedman DL, Dean RA, Wing RA. Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs Microbial and Comparative Genomics. 4: 203-217. PMID 10587947 DOI: 10.1089/Omi.1.1999.4.203  0.448
1999 Tomkins JP, Mahalingam R, Smith H, Goicoechea JL, Knap HT, Wing RA. A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance Plant Molecular Biology. 41: 25-32. PMID 10561065 DOI: 10.1023/A:1006277417789  0.364
1999 Lijavetzky D, Muzzi G, Wicker T, Keller B, Wing R, Dubcovsky J. Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat Genome. 42: 1176-1182. DOI: 10.1139/G99-076  0.35
1997 Zhu H, Choi S, Johnston AK, Wing RA, Dean RA. A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning Fungal Genetics and Biology. 21: 337-347. PMID 9290247 DOI: 10.1006/Fgbi.1997.0996  0.382
1997 Chen M, Sanmiguel P, De Oliveira AC, Woo SS, Zhang H, Wing RA, Bennetzen JL. Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes Proceedings of the National Academy of Sciences of the United States of America. 94: 3431-3435. PMID 9096411 DOI: 10.1073/Pnas.94.7.3431  0.315
1997 Zhang H, Wing RA. Plant Molecular Biology. 35: 115-127. DOI: 10.1023/A:1005733909099  0.335
1996 Avramova Z, Tikhonov A, SanMiguel P, Jin YK, Liu C, Woo SS, Wing RA, Bennetzen JL. Gene identification in a complex chromosomal continuum by local genomic cross-referencing Plant Journal. 10: 1163-1168. PMID 9011097 DOI: 10.1046/J.1365-313X.1996.10061163.X  0.45
1996 Zhang H, Choi S, Woo S, Li Z, Wing R. Construction and characterization of two rice bacterial artificial chromosome libraries from the parents of a permanent recombinant inbred mapping population Molecular Breeding. 2. DOI: 10.1007/Bf00171348  0.375
1995 Cai L, Taylor JF, Wing RA, Gallagher DS, Woo SS, Davis SK. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 29: 413-25. PMID 8666390 DOI: 10.1006/Geno.1995.9986  0.33
1995 Zhao Xinping, Wing RA, Paterson AH. Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.) Genome. 38: 1177-1188. PMID 8654914 DOI: 10.1139/G95-156  0.336
1995 Choi S, Creelman RA, Mullet JE, Wing RA. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana Plant Molecular Biology Reporter. 13: 124-128. DOI: 10.1007/Bf02668782  0.341
1994 Woo Ss, Jiang J, Gill BS, Paterson AH, Wing RA. Construction and characterization of bacterial artificial chromosome library of Sorghum bicolor Nucleic Acids Research. 22: 4922-4931. PMID 7800481 DOI: 10.1093/Nar/22.23.4922  0.334
1993 Paterson AH, Wing RA. Genome mapping in plants Current Opinion in Biotechnology. 4: 142-147. DOI: 10.1016/0958-1669(93)90114-C  0.325
1990 Wing RA, Yamaguchi J, Larabell SK, Ursin VM, McCormick S. Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia Plant Molecular Biology. 14: 17-28. PMID 1983191 DOI: 10.1007/Bf00015651  0.358
1989 Twell D, Wing R, Yamaguchi J, McCormick S. Isolation and expression of an anther-specific gene from tomato. Molecular & General Genetics : Mgg. 217: 240-5. PMID 2770694 DOI: 10.1007/Bf02464887  0.36
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