Kresten Lindorff-Larsen - Related publications

Biology University of Copenhagen, København, Denmark 
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28 most relevant papers in past 60 days:
Year Citation  Score
2022 Gavrilov Y, Kümmerer F, Orioli S, Prestel A, Lindorff-Larsen K, Teilum K. Double Mutant of Chymotrypsin Inhibitor 2 Stabilized through Increased Conformational Entropy. Biochemistry. PMID 35019273 DOI: 10.1021/acs.biochem.1c00749   
2022 Dreydoppel M, Balbach J, Weininger U. Monitoring protein unfolding transitions by NMR-spectroscopy. Journal of Biomolecular Nmr. PMID 34984658 DOI: 10.1007/s10858-021-00389-3   
2022 Chu X, Nagpal S, Muñoz V. Molecular Simulations of Intrinsically Disordered Proteins and Their Binding Mechanisms. Methods in Molecular Biology (Clifton, N.J.). 2376: 343-362. PMID 34845619 DOI: 10.1007/978-1-0716-1716-8_19   
2022 Dogra P, Arya S, Singh AK, Datta A, Mukhopadhyay S. Conformational and Solvation Dynamics of an Amyloidogenic Intrinsically Disordered Domain of a Melanosomal Protein. The Journal of Physical Chemistry. B. PMID 34986640 DOI: 10.1021/acs.jpcb.1c09304   
2022 Hong H, Choi HK, Yoon TY. Untangling the complexity of membrane protein folding. Current Opinion in Structural Biology. 72: 237-247. PMID 34995926 DOI: 10.1016/   
2022 Cao Y, Yang R, Wang W, Jiang S, Yang C, Liu N, Dai H, Lee I, Meng X, Yuan Z. Probing the Formation, Structure and Free Energy Relationships of M Protein Dimers of SARS-CoV-2. Computational and Structural Biotechnology Journal. PMID 35047128 DOI: 10.1016/j.csbj.2022.01.007   
2022 Yuan Q, Chen S, Rao J, Zheng S, Zhao H, Yang Y. AlphaFold2-aware protein-DNA binding site prediction using graph transformer. Briefings in Bioinformatics. PMID 35039821 DOI: 10.1093/bib/bbab564   
2022 Baxa MC, Sosnick TR. Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis. Methods in Molecular Biology (Clifton, N.J.). 2376: 31-63. PMID 34845602 DOI: 10.1007/978-1-0716-1716-8_2   
2022 Orioli S, Henning Hansen CG, Lindorff-Larsen K. Transient exposure of a buried phosphorylation site in an autoinhibited protein. Biophysical Journal. 121: 91-101. PMID 34864046 DOI: 10.1016/j.bpj.2021.11.2890   
2022 Makshakova O, Zykwinska A, Cuenot S, Colliec-Jouault S, Perez S. Three-dimensional structures, dynamics and calcium-mediated interactions of the exopolysaccharide, Infernan, produced by the deep-sea hydrothermal bacterium Alteromonas infernus. Carbohydrate Polymers. 276: 118732. PMID 34823768 DOI: 10.1016/j.carbpol.2021.118732   
2022 Guzovsky AB, Schafer NP, Wolynes PG, Ferreiro DU. Localization of Energetic Frustration in Proteins. Methods in Molecular Biology (Clifton, N.J.). 2376: 387-398. PMID 34845622 DOI: 10.1007/978-1-0716-1716-8_22   
2022 Tsaban T, Varga JK, Avraham O, Ben-Aharon Z, Khramushin A, Schueler-Furman O. Harnessing protein folding neural networks for peptide-protein docking. Nature Communications. 13: 176. PMID 35013344 DOI: 10.1038/s41467-021-27838-9   
2022 Mironov V, Shchugoreva IA, Artyushenko PV, Morozov D, Borbone N, Oliviero G, Zamay TN, Moryachkov RV, Kolovskaya OS, Lukyanenko KA, Song Y, Merkuleva IA, Zabluda VN, Peters G, Koroleva LS, et al. Structure and Interaction Based Design of Anti-SARS-CoV-2 Aptamers. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 35025110 DOI: 10.1002/chem.202104481   
2022 Davies CW, Oh AJ, Mroue R, Steffek M, Bruning JM, Xiao Y, Feng S, Jayakar S, Chan E, Arumugam V, Uribe SC, Drummond J, Frommlet A, Lu C, Franke Y, et al. Conformation-locking antibodies for the discovery and characterization of KRAS inhibitors. Nature Biotechnology. PMID 34992247 DOI: 10.1038/s41587-021-01126-9   
2022 Derry A, Carpenter KA, Altman RB. Training data composition affects performance of protein structure analysis algorithms. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 27: 10-21. PMID 34890132   
2022 Tsao HE, Lui SN, Lo AH, Chen S, Wong HY, Wong CK, Jiang L, Wong KB. Structural insights into how vacuolar sorting receptors recognize the sorting determinants of seed storage proteins. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34983843 DOI: 10.1073/pnas.2111281119   
2022 Kumar P, Bhardwaj T, Garg N, Giri R. Microsecond simulations and CD spectroscopy reveals the intrinsically disordered nature of SARS-CoV-2 spike-C-terminal cytoplasmic tail (residues 1242-1273) in isolation. Virology. 566: 42-55. PMID 34864296 DOI: 10.1016/j.virol.2021.11.005   
2022 John AM, Sekhon H, Ha JH, Loh SN. Engineering a Fluorescent Protein Color Switch Using Entropy-Driven β-Strand Exchange. Acs Sensors. PMID 35006676 DOI: 10.1021/acssensors.1c02239   
2022 Drew DL, Ahammad T, Serafin RA, Sahu ID, Khan RH, Faul E, McCarrick RM, Lorigan GA. Probing the local secondary structure of bacteriophage S pinholin membrane protein using electron spin echo envelope modulation spectroscopy. Biochimica Et Biophysica Acta. Biomembranes. 1864: 183836. PMID 34906602 DOI: 10.1016/j.bbamem.2021.183836   
2022 Gao WND, Gao C, Deane JE, Carpentier DCJ, Smith GL, Graham SC. The crystal structure of vaccinia virus protein E2 and perspectives on the prediction of novel viral protein folds. The Journal of General Virology. 103. PMID 35020582 DOI: 10.1099/jgv.0.001716   
2022 Tsai CY, Salawu EO, Li H, Lin GY, Kuo TY, Voon L, Sharma A, Hu KD, Cheng YY, Sahoo S, Stuart L, Chen CW, Chang YY, Lu YL, Ke S, et al. Helical structure motifs made searchable for functional peptide design. Nature Communications. 13: 102. PMID 35013238 DOI: 10.1038/s41467-021-27655-0   
2022 Hong SH, Nguyen T, Arora P. Design and Synthesis of Crosslinked Helix Dimers as Protein Tertiary Structure Mimics. Current Protocols. 2: e315. PMID 34982512 DOI: 10.1002/cpz1.315   
2022 Zhou S, Liu Y, Wang S, Wang L. Effective prediction of short hydrogen bonds in proteins via machine learning method. Scientific Reports. 12: 469. PMID 35013487 DOI: 10.1038/s41598-021-04306-4   
2022 Oviedo-Rouco S, Spedalieri C, Scocozza MF, Tomasina F, Tórtora V, Radi R, Murgida DH. Correlated electric field modulation of electron transfer parameters and the access to alternative conformations of multifunctional cytochrome c. Bioelectrochemistry (Amsterdam, Netherlands). 143: 107956. PMID 34624727 DOI: 10.1016/j.bioelechem.2021.107956   
2022 Yin G, Lv G, Zhang J, Jiang H, Lai T, Yang Y, Ren Y, Wang J, Yi C, Chen H, Huang Y, Xiao C. Early-stage structure-based drug discovery for small GTPases by NMR spectroscopy. Pharmacology & Therapeutics. 108110. PMID 35007659 DOI: 10.1016/j.pharmthera.2022.108110   
2022 Ma MT, Jennings MR, Blazeck J, Lieberman RL. Catalytically active holo Homo sapiens adenosine deaminase I adopts a closed conformation. Acta Crystallographica. Section D, Structural Biology. 78: 91-103. PMID 34981765 DOI: 10.1107/S2059798321011785   
2022 Liang S, Liu X, Zhang S, Li M, Zhang Q, Chen J. Binding mechanism of inhibitors to SARS-CoV-2 main protease deciphered by multiple replica molecular dynamics simulations. Physical Chemistry Chemical Physics : Pccp. PMID 34985081 DOI: 10.1039/d1cp04361g   
2022 Gao M, Li P, Su Z, Huang Y. Topological frustration leading to backtracking in a coupled folding-binding process. Physical Chemistry Chemical Physics : Pccp. PMID 35029261 DOI: 10.1039/d1cp04927e