Jesper Wengel - Related publications

1991-1996 Odense University 
 1996-2000 University of Copenhagen, København, Denmark 
 2000- University of Southern Denmark, Odense, Denmark 
Bioorganic chemistry; nucleic acid biotechnology; Nanobioscience
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Lyu J, Yang M, Zhang C, Luo Y, Qin T, Su Z, Huang Z. DNA nanostructures directed by RNA clamps. Nanoscale. PMID 34825903 DOI: 10.1039/d1nr03919a   
2021 Evéquoz D, Verhaart IEC, van de Vijver D, Renner W, Aartsma-Rus A, Leumann CJ. 7',5'-alpha-bicyclo-DNA: new chemistry for oligonucleotide exon splicing modulation therapy. Nucleic Acids Research. PMID 34850138 DOI: 10.1093/nar/gkab1097   
2021 Son H, Park J, Hwang I, Jung Y, Bae S, Lee S. Mg-dependent conformational rearrangements of CRISPR-Cas12a R-loop complex are mandatory for complete double-stranded DNA cleavage. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34853172 DOI: 10.1073/pnas.2113747118   
2021 Zhang J, Fakharzadeh A, Pan F, Roland C, Sagui C. Construction of DNA/RNA Triplex Helices Based on GAA/TTC Trinucleotide Repeats. Bio-Protocol. 11: e4155. PMID 34692905 DOI: 10.21769/BioProtoc.4155   
2021 Ma W, Zhan Y, Zhang Y, Mao C, Xie X, Lin Y. The biological applications of DNA nanomaterials: current challenges and future directions. Signal Transduction and Targeted Therapy. 6: 351. PMID 34620843 DOI: 10.1038/s41392-021-00727-9   
2021 Exner RM, Paisey SJ, Redman JE, Pascu SI. Explorations into Peptide Nucleic Acid Contrast Agents as Emerging Scaffolds for Breakthrough Solutions in Medical Imaging and Diagnosis. Acs Omega. 6: 28455-28462. PMID 34746541 DOI: 10.1021/acsomega.1c03994   
2021 Ge J, Qiu X. Expression, purification, characterization of DNA binding activity and crystallization of a putative type II DNA Cytosine-5-methyltransferase from Microcystis aeruginosa. Protein Expression and Purification. 189: 105988. PMID 34634480 DOI: 10.1016/j.pep.2021.105988   
2021 Li S, Fu Z, Wang C, Shang X, Zhao Y, Liu C, Pei M. An ultrasensitive and specific electrochemical biosensor for DNA detection based on T7 exonuclease-assisted regulatory strand displacement amplification. Analytica Chimica Acta. 1183: 338988. PMID 34627518 DOI: 10.1016/j.aca.2021.338988   
2021 Gabriel P, Maranha FG, Nordlander E, Neves A, Terenzi H. A heterotrinuclear bioinspired coordination complex capable of binding to DNA and emulation of nuclease activity. Journal of Inorganic Biochemistry. 226: 111631. PMID 34717251 DOI: 10.1016/j.jinorgbio.2021.111631   
2021 Khamari L, Pramanik S, Shekhar S, Mahato P, Mukherjee S. Preferential Binding of Epirubicin Hydrochloride with Single Nucleotide Mismatched DNA and Subsequent Sequestration by a Mixed Micelle. The Journal of Physical Chemistry. B. PMID 34652157 DOI: 10.1021/acs.jpcb.1c06944   
2021 Braun P, Nguyen MD, Walter MC, Grass G. Ultrasensitive Detection of by Real-Time PCR Targeting a Polymorphism in Multi-Copy 16S rRNA Genes and Their Transcripts. International Journal of Molecular Sciences. 22. PMID 34830105 DOI: 10.3390/ijms222212224   
2021 Longinotti G, Ybarra G, Vighi S, Perandones C, Montserrat J, Yakisich JS, Grasselli M, Radrizzani M. One Step Histological Detection and Staining of the PTEN Tumor Suppressor Protein by a Single Strand DNA. Diagnostics (Basel, Switzerland). 11. PMID 33530289 DOI: 10.3390/diagnostics11020171   
2021 Ma F, Li CC, Zhang CY. Nucleic acid amplification-integrated single-molecule fluorescence imaging for and biosensing. Chemical Communications (Cambridge, England). PMID 34796887 DOI: 10.1039/d1cc04799j   
2021 Yamaguchi T, Yamamoto C, Horiba M, Aoyama H, Obika S. Synthesis and duplex-forming ability of oligonucleotides modified with 4'-C,5'-C-methylene-bridged nucleic acid (4',5'-BNA). Bioorganic & Medicinal Chemistry. 46: 116359. PMID 34391942 DOI: 10.1016/j.bmc.2021.116359   
2021 Lee H, Cho H, Kim J, Lee S, Yoo J, Park D, Lee G. RNase H is an exo- and endoribonuclease with asymmetric directionality, depending on the binding mode to the structural variants of RNA:DNA hybrids. Nucleic Acids Research. PMID 34788459 DOI: 10.1093/nar/gkab1064   
2021 Sapozhnikov DM, Szyf M. Unraveling the functional role of DNA demethylation at specific promoters by targeted steric blockage of DNA methyltransferase with CRISPR/dCas9. Nature Communications. 12: 5711. PMID 34588447 DOI: 10.1038/s41467-021-25991-9   
2021 Yao C, Zhang R, Tang J, Yang D. Rolling circle amplification (RCA)-based DNA hydrogel. Nature Protocols. PMID 34716450 DOI: 10.1038/s41596-021-00621-2   
2021 Gan C, Cheng R, Cai K, Wang X, Xie C, Xu T, Yuan C. Interaction of calf thymus DNA and glucose-based gemini cationic surfactants with different spacer length: A spectroscopy and DLS study. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 120606. PMID 34802935 DOI: 10.1016/j.saa.2021.120606   
2021 Nakagawa O, Aoyama H, Fujii A, Kishimoto Y, Obika S. Crystallographic Structure of Novel Types of Ag -Mediated Base Pairs in Non-canonical DNA Duplex Containing 2'-O,4'-C-Methylene Bridged Nucleic Acids. Chemistry (Weinheim An Der Bergstrasse, Germany). 27: 3842-3848. PMID 33274789 DOI: 10.1002/chem.202004819   
2021 Babu K, Kathiresan V, Kumari P, Newsom S, Parameshwaran HP, Chen X, Liu J, Qin PZ, Rajan R. Coordinated Actions of Cas9 HNH and RuvC Nuclease Domains Are Regulated by the Bridge Helix and the Target DNA Sequence. Biochemistry. PMID 34757726 DOI: 10.1021/acs.biochem.1c00354   
2021 Matyašovský J, Tack L, Palágyi A, Kuba M, Pohl R, Kraus T, Güixens-Gallardo P, Hocek M. Nucleotides bearing aminophenyl- or aminonaphthyl-3-methoxychromone solvatochromic fluorophores for the enzymatic construction of DNA probes for the detection of protein-DNA binding. Organic & Biomolecular Chemistry. 19: 9966-9974. PMID 34747967 DOI: 10.1039/d1ob02098f   
2021 Lachance-Brais C, Hennecker CD, Alenaizan A, Luo X, Toader V, Taing M, Sherrill CD, Mittermaier AK, Sleiman HF. Tuning DNA Supramolecular Polymers by the Addition of Small, Functionalized Nucleobase Mimics. Journal of the American Chemical Society. PMID 34783562 DOI: 10.1021/jacs.1c08972   
2021 Bindu Ramesan A, Vittala SK, Joseph J. DNA condensation and formation of ultrathin nanosheets via DNA assisted self-assembly of an amphiphilic fullerene derivative. Journal of Photochemistry and Photobiology. B, Biology. 226: 112352. PMID 34798504 DOI: 10.1016/j.jphotobiol.2021.112352   
2021 Pan W, Wang X, Ma X, Chu Y, Pang S, Chen Y, Guan X, Zou B, Wu Y, Zhou G. Postsynthetic Modification of the Magnetic Zirconium-Organic Framework for Efficient and Rapid Solid-Phase Extraction of DNA. Acs Applied Materials & Interfaces. PMID 34652138 DOI: 10.1021/acsami.1c12622   
2021 Gong S, Zhang S, Wang X, Li J, Pan W, Li N, Tang B. Strand Displacement Amplification Assisted CRISPR-Cas12a Strategy for Colorimetric Analysis of Viral Nucleic Acid. Analytical Chemistry. 93: 15216-15223. PMID 34736322 DOI: 10.1021/acs.analchem.1c04133   
2021 Gao Y, Yu H, Tian J, Xiao B. Nonenzymatic DNA-Based Fluorescence Biosensor Combining Carbon Dots and Graphene Oxide with Target-Induced DNA Strand Displacement for microRNA Detection. Nanomaterials (Basel, Switzerland). 11. PMID 34685049 DOI: 10.3390/nano11102608   
2021 Chen X, Rong Y, Wang H, Zong H, Li W. A mismatch-suppressed, duplex-specific nuclease powered nanowalker for multiplexed sensing of microRNA. Analytica Chimica Acta. 1182: 338937. PMID 34602202 DOI: 10.1016/j.aca.2021.338937   
2021 Kawai H, Doi T, Ito Y, Kameyama T, Torimoto T, Kashida H, Asanuma H. Perylene-Cy3 FRET System to Analyze Photoactive DNA Structures. Chemistry (Weinheim An Der Bergstrasse, Germany). 27: 12845-12850. PMID 34269491 DOI: 10.1002/chem.202101738   
2021 Zhang T, Tian T, Lin Y. Functionalizing Framework Nucleic Acid-Based Nanostructures for Biomedical Application. Advanced Materials (Deerfield Beach, Fla.). e2107820. PMID 34787933 DOI: 10.1002/adma.202107820   
2021 Chai SQ, Lv WY, He JH, Li YF, Zou HY, Li CM, Huang CZ. Highly Sensitive Detection of miR-21 through Target-Activated Catalytic Hairpin Assembly of X-Shaped DNA Nanostructures. Analytical Chemistry. 93: 14545-14551. PMID 34689544 DOI: 10.1021/acs.analchem.1c03544   
2021 Ouyang P, Fang C, Han J, Zhang J, Yang Y, Qing Y, Chen Y, Shang W, Du J. A DNA Electrochemical Sensor via Terminal Protection of Small-Molecule-Linked DNA for Highly Sensitive Protein Detection. Biosensors. 11. PMID 34821667 DOI: 10.3390/bios11110451   
2021 Kang Y, Wei C. Highly selective turn-on red fluorescence probes for visualization of the G-quadruplexes DNA in living cells. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 267: 120518. PMID 34700155 DOI: 10.1016/j.saa.2021.120518   
2021 Byrd AK, Malone EG, Hazeslip L, Zafar MK, Harrison DK, Thompson MD, Gao J, Perumal SK, Marecki JC, Raney KD. A structural feature of Dda helicase which enhances displacement of streptavidin and trp repressor from DNA. Protein Science : a Publication of the Protein Society. PMID 34761452 DOI: 10.1002/pro.4232   
2021 Wang X, Liu M, Peng F, Ding X. Hydrophobic magnetic deep eutectic solvent: Synthesis, properties, and application in DNA separation. Journal of Chromatography. A. 1659: 462626. PMID 34695692 DOI: 10.1016/j.chroma.2021.462626   
2021 Ortiz M, Jauset-Rubio M, Skouridou V, Machado D, Viveiros M, Clark TG, Simonova A, Kodr D, Hocek M, O'Sullivan CK. Electrochemical Detection of Single-Nucleotide Polymorphism Associated with Rifampicin Resistance in Using Solid-Phase Primer Elongation with Ferrocene-Linked Redox-Labeled Nucleotides. Acs Sensors. PMID 34797987 DOI: 10.1021/acssensors.1c01710   
2021 Liu H, Hong F, Smith F, Goertz J, Ouldridge T, Stevens MM, Yan H, Šulc P. Kinetics of RNA and RNA:DNA Hybrid Strand Displacement. Acs Synthetic Biology. PMID 34752075 DOI: 10.1021/acssynbio.1c00336   
2021 Liu W, Li J, Xu Y, Yin D, Zhu X, Fu H, Su X, Guo X. Complete Mapping of DNA-Protein Interactions at the Single-Molecule Level. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101383. PMID 34609790 DOI: 10.1002/advs.202101383   
2021 Suchan T, Kusliy MA, Khan N, Chauvey L, Tonasso-Calvière L, Schiavinato S, Southon J, Keller M, Kitagawa K, Krause J, Bessudnov AN, Bessudnov AA, Graphodatsky AS, Lamas SV, Wilczyński J, et al. Performance and automation of ancient DNA capture with RNA hyRAD probes. Molecular Ecology Resources. PMID 34582623 DOI: 10.1111/1755-0998.13518   
2021 Eklund AS, Comberlato A, Parish IA, Jungmann R, Bastings MMC. Quantification of Strand Accessibility in Biostable DNA Origami with Single-Staple Resolution. Acs Nano. PMID 34613711 DOI: 10.1021/acsnano.1c05540   
2021 Okafor IC, Choi J, Ha T. Single Molecule Methods for studying CRISPR Cas9-Induced DNA Unwinding. Methods (San Diego, Calif.). PMID 34767923 DOI: 10.1016/j.ymeth.2021.11.003   
2021 Li Y, Pei J, Lu X, Jiao Y, Liu F, Wu X, Liu J, Ding B. Hierarchical Assembly of Super-DNA Origami Based on a Flexible and Covalent-Bound Branched DNA Structure. Journal of the American Chemical Society. PMID 34783532 DOI: 10.1021/jacs.1c09472   
2021 Nitiss JL, Kiianitsa K, Sun Y, Nitiss KC, Maizels N. Topoisomerase Assays. Current Protocols. 1: e250. PMID 34606690 DOI: 10.1002/cpz1.250   
2021 Salerno D, Marrano CA, Cassina V, Cristofalo M, Shao Q, Finzi L, Mantegazza F, Dunlap D. Nanomechanics of negatively supercoiled diaminopurine-substituted DNA. Nucleic Acids Research. PMID 34718727 DOI: 10.1093/nar/gkab982   
2021 Barcena-Varela M, Lujambio A. A Novel Long Noncoding RNA Finetunes the DNA Damage Response in Hepatocellular Carcinoma. Cancer Research. 81: 4899-4900. PMID 34598999 DOI: 10.1158/0008-5472.CAN-21-2776   
2021 Thapa K, Liu W, Wang R. Nucleic acid-based electrochemical biosensor: Recent advances in probe immobilization and signal amplification strategies. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1765. PMID 34734485 DOI: 10.1002/wnan.1765   
2021 Chen C, He R, Liu X, Zhang Z, Chen L. Highly sensitive microRNA detection by a duplex-specific nuclease amplification triggered three-dimensional DNA machine. Analytical Methods : Advancing Methods and Applications. PMID 34812810 DOI: 10.1039/d1ay01709h   
2021 Son H, Bae S, Lee S. A thermodynamic understanding of the salt-induced B-to-Z transition of DNA containing BZ junctions. Biochemical and Biophysical Research Communications. 583: 142-145. PMID 34735876 DOI: 10.1016/j.bbrc.2021.10.065   
2021 Paulsen T, Malapati P, Shibata Y, Wilson B, Eki R, Benamar M, Abbas T, Dutta A. MicroDNA levels are dependent on MMEJ, repressed by c-NHEJ pathway, and stimulated by DNA damage. Nucleic Acids Research. 49: 11787-11799. PMID 34718766 DOI: 10.1093/nar/gkab984   
2021 Adhikari SP, Vukelich P, Guenther DC, Karmakar S, Hrdlicka PJ. Recognition of double-stranded DNA using LNA-modified toehold Invader probes. Organic & Biomolecular Chemistry. 19: 9276-9290. PMID 34657934 DOI: 10.1039/d1ob01888d   
2021 Huang Y, Zhang W, Zhao S, Xie Z, Chen S, Yi G. Ultra-sensitive detection of DNA N6-adenine methyltransferase based on a 3D tetrahedral fluorescence scaffold assisted by symmetrical double-ring dumbbells. Analytica Chimica Acta. 1184: 339018. PMID 34625260 DOI: 10.1016/j.aca.2021.339018