| Year |
Citation |
Score |
| 2024 |
Liao J, Sergeeva AP, Harder ED, Wang L, Sampson JM, Honig B, Friesner RA. A Method for Treating Significant Conformational Changes in Alchemical Free Energy Simulations of Protein-Ligand Binding. Journal of Chemical Theory and Computation. 20: 8609-8623. PMID 39331379 DOI: 10.1021/acs.jctc.4c00954 |
0.749 |
|
| 2024 |
Morano NC, Lopez DH, Meltzer H, Sergeeva AP, Katsamba PS, Rostam KD, Gupta HP, Becker JE, Bornstein B, Cosmanescu F, Schuldiner O, Honig B, Mann RS, Shapiro L. inhibition of co-expressed DIPs and Dprs shapes neural development. Biorxiv : the Preprint Server For Biology. PMID 38895375 DOI: 10.1101/2024.03.04.583391 |
0.607 |
|
| 2024 |
Sampson JM, Cannon DA, Duan J, C K Epstein J, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Guéret SM, Gopalakrishnan R, Geschwindner S, Gareth Rees D, Sigurdardottir A, Wilkinson T, et al. Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations. Journal of Molecular Biology. 168640. PMID 38844044 DOI: 10.1016/j.jmb.2024.168640 |
0.759 |
|
| 2024 |
Sampson JM, Cannon DA, Duan J, Epstein JCK, Sergeeva AP, Katsamba PS, Mannepalli SM, Bahna FA, Adihou H, Gueret SM, Gopalakrishnan R, Geschwinder S, Rees DG, Sigurdardottir A, Wilkinson T, et al. Robust prediction of relative binding energies for protein-protein complex mutations using free energy perturbation calculations Journal of Molecular Biology. PMID 38712280 DOI: https://doi.org/10.1016/j.jmb.2024.168640 |
0.682 |
|
| 2024 |
Zipursky S, Lee J, Sergeeva A, Ahlsen G, Mannepalli S, Bahna F, Goodman K, Khakh B, Weiner J, Shapiro L, Honig B. Astrocyte morphogenesis requires self-recognition. Research Square. PMID 38463964 DOI: 10.21203/rs.3.rs-3932947/v1 |
0.584 |
|
| 2023 |
Sergeeva AP, Katsamba PS, Liao J, Sampson JM, Bahna F, Mannepalli S, Morano NC, Shapiro L, Friesner RA, Honig B. Free Energy Perturbation Calculations of Mutation Effects on SARS-CoV-2 RBD::ACE2 Binding Affinity. Journal of Molecular Biology. 435: 168187. PMID 37355034 DOI: 10.1016/j.jmb.2023.168187 |
0.753 |
|
| 2022 |
Xu S, Sergeeva AP, Katsamba PS, Mannepalli S, Bahna F, Bimela J, Zipursky SL, Shapiro L, Honig B, Zinn K. Affinity requirements for control of synaptic targeting and neuronal cell survival by heterophilic IgSF cell adhesion molecules. Cell Reports. 39: 110618. PMID 35385751 DOI: 10.1016/j.celrep.2022.110618 |
0.631 |
|
| 2021 |
Troyanovsky RB, Sergeeva AP, Indra I, Chen CS, Kato R, Shapiro L, Honig B, Troyanovsky SM. Sorting of cadherin-catenin-associated proteins into individual clusters. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34272290 DOI: 10.1073/pnas.2105550118 |
0.631 |
|
| 2020 |
Sergeeva AP, Katsamba PS, Cosmanescu F, Brewer JJ, Ahlsen G, Mannepalli S, Shapiro L, Honig B. DIP/Dpr interactions and the evolutionary design of specificity in protein families. Nature Communications. 11: 2125. PMID 32358559 DOI: 10.1038/S41467-020-15981-8 |
0.683 |
|
| 2019 |
Generous AR, Harrison OJ, Troyanovsky RB, Mateo M, Navaratnarajah CK, Donohue RC, Pfaller CK, Alekhina O, Sergeeva AP, Indra I, Thornburg T, Kochetkova I, Billadeau DD, Taylor MP, Troyanovsky SM, et al. Trans-endocytosis elicited by nectins transfers cytoplasmic cargo including infectious material between cells. Journal of Cell Science. PMID 31331966 DOI: 10.1242/Jcs.235507 |
0.632 |
|
| 2018 |
Cosmanescu F, Katsamba PS, Sergeeva AP, Ahlsen G, Patel SD, Brewer JJ, Tan L, Xu S, Xiao Q, Nagarkar-Jaiswal S, Nern A, Bellen HJ, Zipursky SL, Honig B, Shapiro L. Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins. Neuron. PMID 30467080 DOI: 10.1016/J.Neuron.2018.10.046 |
0.67 |
|
| 2018 |
Xu S, Xiao Q, Cosmanescu F, Sergeeva AP, Yoo J, Lin Y, Katsamba PS, Ahlsen G, Kaufman J, Linaval NT, Lee PT, Bellen HJ, Shapiro L, Honig B, Tan L, et al. Interactions between the Ig-Superfamily Proteins DIP-α and Dpr6/10 Regulate Assembly of Neural Circuits. Neuron. PMID 30467079 DOI: 10.1016/J.Neuron.2018.11.001 |
0.745 |
|
| 2018 |
Cosmanescu F, Katsamba PS, Sergeeva AP, Ahlsen G, Patel SD, Brewer JJ, Tan L, Xu S, Xiao Q, Nagarkar-Jaiswal S, Bellen H, Zipursky SL, Honig B, Shapiro L. Quantitative interactome for DIP/Dpr Immunoglubin Superfamily Cell Recognition Proteins Neuron. DOI: 10.2210/Pdb6Efy/Pdb |
0.648 |
|
| 2018 |
Cosmanescu F, Katsamba PS, Sergeeva AP, Ahlsen G, Patel S, Brewer J, Tan L, Xu S, Xiao Q, Zipursky SL, Honig B, Shapiro L. Family-Wide Biophysical Analysis of Dpr-DIP Interactions Biophysical Journal. 114: 154a. DOI: 10.1016/J.Bpj.2017.11.865 |
0.592 |
|
| 2016 |
Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsén G, Sergeeva AP, Honig B, Sanes JR, Shapiro L. Molecular basis of sidekick-mediated cell-cell adhesion and specificity. Elife. 5. PMID 27644106 DOI: 10.7554/Elife.19058 |
0.669 |
|
| 2016 |
Goodman KM, Yamagata M, Jin X, Mannepalli S, Katsamba PS, Ahlsén G, Sergeeva AP, Honig B, Sanes JR, Shapiro L. Author response: Molecular basis of sidekick-mediated cell-cell adhesion and specificity Elife. DOI: 10.7554/Elife.19058.021 |
0.625 |
|
| 2015 |
Chen CS, Hong S, Indra I, Sergeeva AP, Troyanovsky RB, Shapiro L, Honig B, Troyanovsky SM. α-Catenin-mediated cadherin clustering couples cadherin and actin dynamics. The Journal of Cell Biology. PMID 26261181 DOI: 10.1083/Jcb.201412064 |
0.665 |
|
| 2014 |
Sergeeva AP, Popov IA, Piazza ZA, Li WL, Romanescu C, Wang LS, Boldyrev AI. Understanding boron through size-selected clusters: Structure, chemical bonding, and fluxionality Accounts of Chemical Research. 47: 1349-1358. PMID 24661097 DOI: 10.1021/Ar400310G |
0.587 |
|
| 2012 |
Sergeeva AP, Piazza ZA, Romanescu C, Li WL, Boldyrev AI, Wang LS. B 22 - and B 23 -: All-boron analogues of anthracene and phenanthrene Journal of the American Chemical Society. 134: 18065-18073. PMID 23030415 DOI: 10.1021/Ja307605T |
0.584 |
|
| 2012 |
Zhang J, Sergeeva AP, Sparta M, Alexandrova AN. B13+ : a photodriven molecular Wankel engine. Angewandte Chemie (International Ed. in English). 51: 8512-5. PMID 22777910 DOI: 10.1002/Anie.201202674 |
0.55 |
|
| 2012 |
Piazza ZA, Li WL, Romanescu C, Sergeeva AP, Wang LS, Boldyrev AI. A photoelectron spectroscopy and ab initio study of B21-: negatively charged boron clusters continue to be planar at 21. The Journal of Chemical Physics. 136: 104310. PMID 22423841 DOI: 10.1063/1.3692967 |
0.6 |
|
| 2012 |
Piazza ZA, Li WL, Romanescu C, Sergeeva AP, Wang LS, Boldyrev AI. A photoelectron spectroscopy and ab initio study of B 21 -: Negatively charged boron clusters continue to be planar at 21 Journal of Chemical Physics. 136. DOI: 10.1063/1.3692967 |
0.515 |
|
| 2012 |
Osorio E, Sergeeva AP, Santos JC, Tiznado W. Theoretical study of the Si 5-n(BH) n 2- and Na(Si 5-n(BH) n) - (n = 0-5) systems Physical Chemistry Chemical Physics. 14: 16326-16330. DOI: 10.1039/c2cp42674a |
0.197 |
|
| 2012 |
Romanescu C, Galeev TR, Sergeeva AP, Li WL, Wang LS, Boldyrev AI. Experimental and computational evidence of octa- and nona-coordinated planar iron-doped boron clusters: Fe©B8 - and Fe©B9 - Journal of Organometallic Chemistry. 721: 148-154. DOI: 10.1016/J.Jorganchem.2012.07.050 |
0.73 |
|
| 2012 |
Zhang J, Sergeeva AP, Sparta M, Alexandrova AN. B 13 +: A photodriven molecular Wankel engine Angewandte Chemie - International Edition. 51: 8512-8515. DOI: 10.1002/anie.201202674 |
0.493 |
|
| 2011 |
Sergeeva AP, Averkiev BB, Zhai HJ, Boldyrev AI, Wang LS. All-boron analogues of aromatic hydrocarbons: B17- and B18-. The Journal of Chemical Physics. 134: 224304. PMID 21682511 DOI: 10.1063/1.3599452 |
0.566 |
|
| 2011 |
Galeev TR, Chen Q, Guo JC, Bai H, Miao CQ, Lu HG, Sergeeva AP, Li SD, Boldyrev AI. Deciphering the mystery of hexagon holes in an all-boron graphene α-sheet. Physical Chemistry Chemical Physics : Pccp. 13: 11575-8. PMID 21603683 DOI: 10.1039/C1Cp20439D |
0.71 |
|
| 2011 |
Romanescu C, Sergeeva AP, Li WL, Boldyrev AI, Wang LS. Planarization of B7- and B12- clusters by isoelectronic substitution: AlB6- and AlB11-. Journal of the American Chemical Society. 133: 8646-53. PMID 21520972 DOI: 10.1021/Ja2012438 |
0.578 |
|
| 2011 |
Martínez-Guajardo G, Sergeeva AP, Boldyrev AI, Heine T, Ugalde JM, Merino G. Unravelling phenomenon of internal rotation in B13+ through chemical bonding analysis. Chemical Communications (Cambridge, England). 47: 6242-4. PMID 21461423 DOI: 10.1039/C1Cc10821B |
0.544 |
|
| 2011 |
Pokhodnya K, Olson C, Dai X, Schulz DL, Boudjouk P, Sergeeva AP, Boldyrev AI. Flattening a puckered cyclohexasilane ring by suppression of the pseudo-Jahn-Teller effect. The Journal of Chemical Physics. 134: 014105. PMID 21218995 DOI: 10.1063/1.3516179 |
0.509 |
|
| 2011 |
Weck PF, Sergeeva AP, Kim E, Boldyrev AI, Czerwinski KR. Chemical bonding and aromaticity in trinuclear transition-metal halide clusters. Inorganic Chemistry. 50: 1039-46. PMID 21190332 DOI: 10.1021/Ic101779W |
0.553 |
|
| 2011 |
Galeev TR, Chen Q, Guo JC, Bai H, Miao CQ, Lu HG, Sergeeva AP, Li SD, Boldyrev AI. Deciphering the mystery of hexagon holes in an all-boron grapheme α-sheet Physical Chemistry Chemical Physics. 13: 11575-11578. DOI: 10.1039/c1cp20439d |
0.675 |
|
| 2011 |
Romanescu C, Sergeeva AP, Li WL, Boldyrev AI, Wang LS. Planarization of B 7 - and B 12 - clusters by isoelectronic substitution: AlB 6 - and AlB 11 - Journal of the American Chemical Society. 133: 8646-8653. DOI: 10.1021/ja2012438 |
0.503 |
|
| 2011 |
Week PF, Sergeeva AP, Kim E, Boldyrev AI, Czerwinski KR. Chemical bonding and aromaticity in trinuclear transition-metal halide clusters Inorganic Chemistry. 50: 1039-1046. DOI: 10.1021/ic101779w |
0.488 |
|
| 2011 |
Sergeeva AP, Boldyrev AI. Rational Design of Small 3D Gold Clusters Journal of Cluster Science. 22: 321-329. DOI: 10.1007/S10876-011-0386-2 |
0.547 |
|
| 2011 |
Romanescu C, Sergeeva AP, Li W, Boldyrev AI, Wang L. ChemInform Abstract: Planarization of B7-and B12-Clusters by Isoelectronic Substitution: AlB6-and AlB11-. Cheminform. 42: no-no. DOI: 10.1002/chin.201138001 |
0.503 |
|
| 2010 |
Huang W, Sergeeva AP, Zhai HJ, Averkiev BB, Wang LS, Boldyrev AI. A concentric planar doubly π-aromatic B₁₉⁻ cluster. Nature Chemistry. 2: 202-6. PMID 21124477 DOI: 10.1038/Nchem.534 |
0.597 |
|
| 2010 |
Sergeeva AP, Boldyrev AI. δ-Bonding in the [Pd4(μ4-C9H9)(μ4-C8H8)]+ sandwich complex. Physical Chemistry Chemical Physics : Pccp. 12: 12050-4. PMID 20725684 DOI: 10.1039/C0Cp00475H |
0.518 |
|
| 2010 |
Wang H, Ko YJ, Bowen KH, Sergeeva AP, Averkiev BB, Boldyrev AI. Combined experimental and theoretical investigation of three-dimensional, nitrogen-doped, gallium cluster anions. The Journal of Physical Chemistry. A. 114: 11070-7. PMID 20373798 DOI: 10.1021/Jp101419B |
0.519 |
|
| 2010 |
Sergeeva AP, Boldyrev AI. The chemical bonding of Re3Cl9 AND Re3Cl9 2- Revealed by the adaptive natural density partitioning analyses Comments On Inorganic Chemistry. 31: 2-12. DOI: 10.1080/02603590903498639 |
0.553 |
|
| 2010 |
Sergeeva AP, Boldyrev AI. δ-Bonding in the [Pd4(μ4-C9H 9)(μ4-C8H8)]+ sandwich complex Physical Chemistry Chemical Physics. 12: 12050-12054. DOI: 10.1039/c0cp00475h |
0.424 |
|
| 2010 |
Sergeeva AP, Boldyrev AI. Flattening a puckered pentasilacyclopentadienide ring by suppression of the pseudo Jahn-Teller effect Organometallics. 29: 3951-3954. DOI: 10.1021/Om1006038 |
0.499 |
|
| 2010 |
Sergeeva AP, Averkiev BB, Boldyrev AI. All-transition metal aromaticity and antiaromaticity Structure and Bonding. 136: 275-306. DOI: 10.1007/978-3-642-05243-9_8 |
0.411 |
|
| 2009 |
Wang XB, Sergeeva AP, Xing XP, Massaouti M, Karpuschkin T, Hampe O, Boldyrev AI, Kappes MM, Wang LS. Probing the electronic stability of multiply charged anions: sulfonated pyrene tri- and tetraanions. Journal of the American Chemical Society. 131: 9836-42. PMID 19552438 DOI: 10.1021/Ja903615G |
0.551 |
|
| 2009 |
Wang XB, Sergeeva AP, Yang J, Xing XP, Boldyrev AI, Wang LS. Photoelectron spectroscopy of cold hydrated sulfate clusters, SO4(2-)(H2O)n (n = 4-7): temperature-dependent isomer populations. The Journal of Physical Chemistry. A. 113: 5567-76. PMID 19419223 DOI: 10.1021/Jp900682G |
0.555 |
|
| 2009 |
Wang XB, Sergeeva AP, Xing XP, Massaouti M, Karpuschkin T, Hampe O, Boldyrev AI, Kappes MM, Wang LS. Probing the electronic stability of multiply charged anions: Sulfonated pyrene tri- and tetraanions Journal of the American Chemical Society. 131: 9836-9842. DOI: 10.1021/ja903615g |
0.448 |
|
| 2008 |
Sergeeva AP, Zubarev DY, Zhai HJ, Boldyrev AI, Wang LS. A photoelectron spectroscopic and theoretical study of B16- and B16(2-): an all-boron naphthalene. Journal of the American Chemical Society. 130: 7244-6. PMID 18479137 DOI: 10.1021/Ja802494Z |
0.734 |
|
| 2008 |
Yang J, Xing XP, Wang XB, Wang LS, Sergeeva AP, Boldyrev AI. Negative electron binding energies observed in a triply charged anion: photoelectron spectroscopy of 1-hydroxy-3,6,8-pyrene-trisulfonate. The Journal of Chemical Physics. 128: 091102. PMID 18331078 DOI: 10.1063/1.2889001 |
0.552 |
|
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