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Russell Bruce Davidson - Publications

Affiliations: 
2013-2020 Chemistry Colorado State University, Fort Collins, CO 
 2020- Oak Ridge National Laboratory, Oak Ridge, TN, United States 
Area:
Computational Chemistry, Biophysics
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Sanders B, Pokhrel S, Labbe A, Mathews I, Cooper C, Davidson R, Phillips G, Weiss K, Zhang Q, O'Neill H, Kaur M, Ferrins L, Schmidt J, Reichard W, Surendranathan S, et al. Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2. Research Square. PMID 35898342 DOI: 10.21203/rs.3.rs-1840200/v1  0.516
2022 Pal D, De K, Shanks CM, Feng K, Yates TB, Morrell-Falvey J, Davidson RB, Parks JM, Muchero W. Core cysteine residues in the Plasminogen-Apple-Nematode (PAN) domain are critical for HGF/c-MET signaling. Communications Biology. 5: 646. PMID 35778602 DOI: 10.1038/s42003-022-03582-8  0.521
2022 Davidson R, Woods J, Effler TC, Thavappiragasam M, Mitchell JC, Parks JM, Sedova A. OpenMDlr: Parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. Bioinformatics (Oxford, England). PMID 35512391 DOI: 10.1093/bioinformatics/btac307  0.531
2022 Glaser J, Sedova A, Galanie S, Kneller DW, Davidson RB, Maradzike E, Del Galdo S, Labbé A, Hsu DJ, Agarwal R, Bykov D, Tharrington A, Parks JM, Smith DMA, Daidone I, et al. Hit Expansion of a Noncovalent SARS-CoV-2 Main Protease Inhibitor. Acs Pharmacology & Translational Science. 5: 255-265. PMID 35434531 DOI: 10.1021/acsptsci.2c00026  0.541
2021 Sanders B, Pohkrel S, Labbe A, Mathews I, Cooper C, Davidson R, Phillips G, Weiss K, Zhang Q, O'Neill H, Kaur M, Ferrins L, Schmidt J, Reichard W, Surendranathan S, et al. Potent and Selective Covalent Inhibitors of the Papain-like Protease from SARS-CoV-2. Research Square. PMID 34642689 DOI: 10.21203/rs.3.rs-906621/v1  0.458
2020 Lake PT, Davidson RB, Klem H, Hocky GM, McCullagh M. Residue-Level Allostery Propagates Through the Effective Coarse-Grained Hessian. Journal of Chemical Theory and Computation. PMID 32251581 DOI: 10.1021/Acs.Jctc.9B01149  0.538
2020 Davidson RB, Hendrix J, Geiss BJ, McCullagh M. RNA-Dependent Structures of the RNA-Binding Loop in the Flavivirus NS3 Helicase. The Journal of Physical Chemistry. B. PMID 32105483 DOI: 10.1021/Acs.Jpcb.0C00457  0.639
2020 Davidson RB, Hendrix J, Geiss BJ, McCullagh M. RNA-Dependent Structures of the RNA-Binding Loop in the Flavivirus NS3 Helicase. The Journal of Physical Chemistry. B. PMID 32105483 DOI: 10.1021/Acs.Jpcb.0C00457  0.639
2019 Du Pont KE, Davidson RB, McCullagh M, Geiss BJ. Motif V regulates energy transduction between the flavivirus NS3 ATPase and RNA-binding cleft. The Journal of Biological Chemistry. PMID 31914411 DOI: 10.1074/Jbc.Ra119.011922  0.649
2019 Du Pont KE, Davidson RB, McCullagh M, Geiss BJ. Motif V regulates energy transduction between the flavivirus NS3 ATPase and RNA-binding cleft. The Journal of Biological Chemistry. PMID 31914411 DOI: 10.1074/Jbc.Ra119.011922  0.649
2019 Davidson RB, McCullagh M. Theoretical Modeling of the RNA-Enhanced NTPase Activity of Dengue and Zika NS3 Helicases Biophysical Journal. 116: 434a-435a. DOI: 10.1016/J.Bpj.2018.11.2340  0.57
2019 Davidson RB, McCullagh M. Lβ3β4 Conformations of the Flaviviridae NS3h Protein Biophysical Journal. 116: 434a. DOI: 10.1016/J.Bpj.2018.11.2339  0.551
2018 Davidson RB, Hendrix J, Geiss BJ, McCullagh M. Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations. Plos Computational Biology. 14: e1006103. PMID 29659571 DOI: 10.1371/Journal.Pcbi.1006103  0.688
2018 Davidson RB, Hendrix J, Geiss BJ, McCullagh M. Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations. Plos Computational Biology. 14: e1006103. PMID 29659571 DOI: 10.1371/Journal.Pcbi.1006103  0.688
2018 Du Pont KE, Davidson RB, Geiss BJ, McCullagh M. Molecular Analysis of Dengue NS3 Helicase Function Biophysical Journal. 114: 233a. DOI: 10.1016/J.Bpj.2017.11.1299  0.535
2017 Davidson RB, Geiss BJ, McCullagh M. Molecular Allostery in Dengue NS3 Helicase along the ATP Hydrolysis Cycle Biophysical Journal. 112: 497a. DOI: 10.1016/J.Bpj.2016.11.2689  0.631
2016 McCullagh M, Davidson R. The Coupling of ATP Hydrolysis to RNA Translocation in Dengue Virus NS3 Helicase: Insights from Molecular Dynamics Biophysical Journal. 110: 381a. DOI: 10.1016/J.Bpj.2015.11.2059  0.64
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