| Year |
Citation |
Score |
| 2024 |
Liu JX, Guo C, Ma PF, Zhou MY, Luo YH, Zhu GF, Xu ZC, Milne RI, Vorontsova MS, Li DZ. The origin and morphological character evolution of the paleotropical woody bamboos. Journal of Integrative Plant Biology. PMID 39166548 DOI: 10.1111/jipb.13751 |
0.528 |
|
| 2024 |
Luo YH, Ma LL, Cadotte MW, Seibold S, Zou JY, Burgess KS, Tan SL, Ye LJ, Zheng W, Chen ZF, Liu DT, Zhu GF, Shi XC, Zhao W, Bi Z, ... ... Li DZ, et al. Testing the ectomycorrhizal-dominance hypothesis for ecosystem multifunctionality in a subtropical mountain forest. The New Phytologist. PMID 39073209 DOI: 10.1111/nph.20003 |
0.582 |
|
| 2024 |
Ma LL, Seibold S, Cadotte MW, Zou JY, Song J, Mo ZQ, Tan SL, Ye LJ, Zheng W, Burgess KS, Chen ZF, Liu DT, Yang XL, Shi XC, Zhao W, ... ... Li DZ, et al. Niche convergence and biogeographic history shape elevational tree community assembly in a subtropical mountain forest. The Science of the Total Environment. 173343. PMID 38777069 DOI: 10.1016/j.scitotenv.2024.173343 |
0.665 |
|
| 2024 |
Wu ZY, Chapman MA, Liu J, Milne RI, Zhao Y, Luo YH, Zhu GF, Cadotte MW, Luan MB, Fan PZ, Monro AK, Li ZP, Corlett RT, Li DZ. Genomic variation, environmental adaptation and feralization in ramie, an ancient fiber crop. Plant Communications. 100942. PMID 38720463 DOI: 10.1016/j.xplc.2024.100942 |
0.36 |
|
| 2024 |
Wu H, Li DZ, Ma PF. Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales. Bmc Biology. 22: 97. PMID 38679718 DOI: 10.1186/s12915-024-01890-5 |
0.587 |
|
| 2024 |
Zuntini AR, Carruthers T, Maurin O, Bailey PC, Leempoel K, Brewer GE, Epitawalage N, Françoso E, Gallego-Paramo B, McGinnie C, Negrão R, Roy SR, Simpson L, Toledo Romero E, Barber VMA, ... ... Li DZ, et al. Phylogenomics and the rise of the angiosperms. Nature. PMID 38658746 DOI: 10.1038/s41586-024-07324-0 |
0.394 |
|
| 2024 |
Zhao JX, Wang S, Wen J, Zhou SZ, Jiang XD, Zhong MC, Liu J, Dong X, Deng Y, Hu JY, Li DZ. Evolution of the FLOWERING LOCUS T-like genes in angiosperms: a core-Lamiales-specific diversification. Journal of Experimental Botany. PMID 38642399 DOI: 10.1093/jxb/erae176 |
0.743 |
|
| 2024 |
Zhang T, Huang W, Zhang L, Li DZ, Qi J, Ma H. Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. Nature Communications. 15: 3305. PMID 38632270 DOI: 10.1038/s41467-024-47428-9 |
0.384 |
|
| 2024 |
Chen LQ, Li X, Yao X, Li DZ, Barrett C, dePamphilis CW, Yu WB. Variations and reduction of plastome are associated with the evolution of parasitism in Convolvulaceae. Plant Molecular Biology. 114: 40. PMID 38622367 DOI: 10.1007/s11103-024-01440-1 |
0.348 |
|
| 2024 |
Zuo ZY, Lu JM, Li CF, Li DZ. , a critically endangered diploid new species of Dryopteridaceae from Yunnan, China. Phytokeys. 239: 195-204. PMID 38545399 DOI: 10.3897/phytokeys.239.118655 |
0.346 |
|
| 2024 |
Ma PF, Liu YL, Guo C, Jin G, Guo ZH, Mao L, Yang YZ, Niu LZ, Wang YJ, Clark LG, Kellogg EA, Xu ZC, Ye XY, Liu JX, Zhou MY, ... ... Li DZ, et al. Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance. Nature Genetics. PMID 38491323 DOI: 10.1038/s41588-024-01683-0 |
0.812 |
|
| 2024 |
Liu J, Zhou SZ, Liu YL, Zhao BY, Yu D, Zhong MC, Jiang XD, Cui WH, Zhao JX, Qiu J, Liu LM, Guo ZH, Li HT, Tan DY, Hu JY, ... Li DZ, et al. Genomes of Meniocus linifolius and Tetracme quadricornis unveil the ancestral karyotype and genomic features of core Brassicaceae. Plant Communications. 100878. PMID 38475995 DOI: 10.1016/j.xplc.2024.100878 |
0.791 |
|
| 2024 |
Liu YL, Gao SY, Jin G, Zhou MY, Gao Q, Guo C, Yang YZ, Niu LZ, Xia E, Guo ZH, Ma PF, Li DZ. BambooBase: A comprehensive database of bamboo omics and systematics. Molecular Plant. PMID 38419327 DOI: 10.1016/j.molp.2024.02.017 |
0.624 |
|
| 2024 |
Liu J, Hu JY, Li DZ. Remarkable mitochondrial genome heterogeneity in Meniocus linifolius (Brassicaceae). Plant Cell Reports. 43: 36. PMID 38200362 DOI: 10.1007/s00299-023-03102-w |
0.734 |
|
| 2024 |
Han B, Tong B, Zhang J, Bu Z, Zhao L, Xian Y, Li D, Xie X. Genomic divergence and demographic history of Quercus aliena populations. Bmc Plant Biology. 24: 39. PMID 38195447 DOI: 10.1186/s12870-023-04623-y |
0.399 |
|
| 2023 |
Li MM, Meegahakumbura MK, Wambulwa MC, Burgess KS, Möller M, Shen ZF, Li DZ, Gao LM. Genetic analyses of ancient tea trees provide insights into the breeding history and dissemination of Chinese Assam tea ( var. ). Plant Diversity. 46: 229-237. PMID 38807909 DOI: 10.1016/j.pld.2023.06.002 |
0.638 |
|
| 2023 |
Hu XZ, Guo C, Qin SY, Li DZ, Guo ZH. Deep genome skimming reveals the hybrid origin of (Poaceae: Bambusoideae). Plant Diversity. 46: 344-352. PMID 38798728 DOI: 10.1016/j.pld.2023.06.001 |
0.696 |
|
| 2023 |
Fu CN, Wicke S, Zhu AD, Li DZ, Gao LM. Distinctive plastome evolution in carnivorous angiosperms. Bmc Plant Biology. 23: 660. PMID 38124058 DOI: 10.1186/s12870-023-04682-1 |
0.677 |
|
| 2023 |
Ya JD, Wang WT, Liu YL, Jiang H, Han ZD, Zhang T, Huang H, Cai J, Li DZ. Five new and noteworthy species of Epidendroideae (Orchidaceae) from southwestern China based on morphological and phylogenetic evidence. Phytokeys. 235: 211-236. PMID 38033625 DOI: 10.3897/phytokeys.235.111230 |
0.369 |
|
| 2023 |
Qin SY, Yu Zuo Z, Xu SX, Liu J, Yang FM, Luo YH, Ye JW, Zhao Y, Rong J, Liu B, Ma PF, Li DZ. Anthropogenic disturbance driving population decline of a dominant tree in East Asia evergreen broadleaved forests over the last 11, 000 years. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 37700668 DOI: 10.1111/cobi.14180 |
0.49 |
|
| 2023 |
Qin HT, Mӧller M, Milne R, Luo YH, Zhu GF, Li DZ, Liu J, Gao LM. Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains. Molecular Phylogenetics and Evolution. 189: 107915. PMID 37666379 DOI: 10.1016/j.ympev.2023.107915 |
0.701 |
|
| 2023 |
Zhao JX, Wang S, Liu J, Jiang XD, Wen J, Suo ZQ, Liu J, Zhong MC, Wang Q, Gu Z, Liu C, Deng Y, Hu JY, Li DZ. A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering. The Plant Journal : For Cell and Molecular Biology. PMID 37665679 DOI: 10.1111/tpj.16452 |
0.703 |
|
| 2023 |
Li CJ, Xie XT, Liu HX, Wang RN, Li DZ. Plastome evolution in the East Asian lobelias (Lobelioideae) using phylogenomic and comparative analyses. Frontiers in Plant Science. 14: 1144406. PMID 37063184 DOI: 10.3389/fpls.2023.1144406 |
0.467 |
|
| 2023 |
Ye LJ, Möller M, Luo YH, Zou JY, Zheng W, Liu J, Li DZ, Gao LM. Variation in gene expression along an elevation gradient of var. assessed in a comparative transcriptomic analysis. Frontiers in Plant Science. 14: 1133065. PMID 37025136 DOI: 10.3389/fpls.2023.1133065 |
0.643 |
|
| 2023 |
Qin SY, Zuo ZY, Guo C, Du XY, Liu SY, Yu XQ, Xiang XG, Rong J, Liu B, Liu ZF, Ma PF, Li DZ. Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change. Molecular Ecology. PMID 36847615 DOI: 10.1111/mec.16904 |
0.601 |
|
| 2023 |
Fan W, He ZS, Zhe M, Feng JQ, Zhang L, Huang Y, Liu F, Huang JL, Ya JD, Zhang SB, Yang JB, Zhu A, Li DZ. High-quality Cymbidium mannii genome and multifaceted regulation of crassulacean acid metabolism in epiphytes. Plant Communications. 100564. PMID 36809882 DOI: 10.1016/j.xplc.2023.100564 |
0.3 |
|
| 2022 |
Liu JX, Xu ZC, Zhang YX, Zhou MY, Li DZ. The identity of species and enumeration of (Poaceae: Bambusoideae) in China. Plant Diversity. 45: 133-146. PMID 37069933 DOI: 10.1016/j.pld.2022.07.001 |
0.322 |
|
| 2022 |
Rakotonasolo RA, Dransfield S, Haevermans T, Ralimanana H, Vorontsova MS, Zhou MY, Li DZ. New insights into intergeneric relationships of Hickeliinae (Poaceae: Bambusoideae) revealed by complete plastid genomes. Plant Diversity. 45: 125-132. PMID 37069926 DOI: 10.1016/j.pld.2022.06.001 |
0.452 |
|
| 2022 |
Lv SY, Ye XY, Li ZH, Ma PF, Li DZ. Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus . Plant Diversity. 45: 147-155. PMID 37069924 DOI: 10.1016/j.pld.2022.04.002 |
0.63 |
|
| 2022 |
Han B, Zhang MJ, Xian Y, Xu H, Cui CC, Liu D, Wang L, Li DZ, Li WQ, Xie XM. Variations in genetic diversity in cultivated . Frontiers in Plant Science. 13: 1030647. PMID 36438104 DOI: 10.3389/fpls.2022.1030647 |
0.394 |
|
| 2022 |
Guo C, Luo Y, Gao LM, Yi TS, Li HT, Yang JB, Li DZ. Phylogenomics and the flowering plant tree of life. Journal of Integrative Plant Biology. PMID 36416284 DOI: 10.1111/jipb.13415 |
0.689 |
|
| 2022 |
Ye JW, Li DZ. Diversification of East Asian subtropical evergreen broadleaved forests over the last 8 million years. Ecology and Evolution. 12: e9451. PMID 36329812 DOI: 10.1002/ece3.9451 |
0.364 |
|
| 2022 |
Lu JM, Du XY, Kuo LY, Ebihara A, Perrie LR, Zuo ZY, Shang H, Chang YH, Li DZ. Plastome phylogenomic analysis reveals evolutionary divergences of Polypodiales suborder Dennstaedtiineae. Bmc Plant Biology. 22: 511. PMID 36319964 DOI: 10.1186/s12870-022-03886-1 |
0.328 |
|
| 2022 |
Zhang L, Huang YW, Huang JL, Ya JD, Zhe MQ, Zeng CX, Zhang ZR, Zhang SB, Li DZ, Li HT, Yang JB. DNA barcoding of Cymbidium by genome skimming: call for next-generation nuclear barcodes. Molecular Ecology Resources. PMID 36219539 DOI: 10.1111/1755-0998.13719 |
0.456 |
|
| 2022 |
Han B, Wang L, Xian Y, Xie XM, Li WQ, Zhao Y, Zhang RG, Qin X, Li DZ, Jia KH. A chromosome-level genome assembly of the Chinese cork oak (). Frontiers in Plant Science. 13: 1001583. PMID 36212310 DOI: 10.3389/fpls.2022.1001583 |
0.413 |
|
| 2022 |
Mo ZQ, Fu CN, Zhu MS, Milne R, Yang JB, Cai J, Qin HT, Zheng W, Hollingsworth PM, Li DZ, Gao LM. Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae). Annals of Botany. PMID 36087101 DOI: 10.1093/aob/mcac114 |
0.675 |
|
| 2022 |
Niu LZ, Xu W, Ma PF, Guo ZH, Li DZ. Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos. Planta. 256: 53. PMID 35913571 DOI: 10.1007/s00425-022-03962-8 |
0.65 |
|
| 2022 |
Fan W, Liu F, Jia Q, Du H, Chen W, Ruan J, Lei J, Li DZ, Mower JP, Zhu A. Fragaria mitogenomes evolve rapidly in structure but slowly in sequence and incur frequent multinucleotide mutations mediated by micro-inversions. The New Phytologist. PMID 35731093 DOI: 10.1111/nph.18334 |
0.325 |
|
| 2022 |
Zhao L, Yang YY, Qu XJ, Ma H, Hu Y, Li HT, Yi TS, Li DZ. Phylotranscriptomic Analyses Reveal Multiple Whole-Genome Duplication Events, the History of Diversification and Adaptations in the Araceae. Annals of Botany. PMID 35671385 DOI: 10.1093/aob/mcac062 |
0.383 |
|
| 2022 |
Ogoma CA, Liu J, Stull GW, Wambulwa MC, Oyebanji O, Milne RI, Monro AK, Zhao Y, Li DZ, Wu ZY. Deep Insights Into the Plastome Evolution and Phylogenetic Relationships of the Tribe Urticeae (Family Urticaceae). Frontiers in Plant Science. 13: 870949. PMID 35668809 DOI: 10.3389/fpls.2022.870949 |
0.446 |
|
| 2022 |
Du XY, Kuo LY, Zuo ZY, Li DZ, Lu JM. Structural Variation of Plastomes Provides Key Insight Into the Deep Phylogeny of Ferns. Frontiers in Plant Science. 13: 862772. PMID 35645990 DOI: 10.3389/fpls.2022.862772 |
0.321 |
|
| 2022 |
Wang J, Fu CN, Mo ZQ, Möller M, Yang JB, Zhang ZR, Li DZ, Gao LM. Testing the Complete Plastome for Species Discrimination, Cryptic Species Discovery and Phylogenetic Resolution in (Cephalotaxaceae). Frontiers in Plant Science. 13: 768810. PMID 35599857 DOI: 10.3389/fpls.2022.768810 |
0.669 |
|
| 2022 |
Wambulwa MC, Luo YH, Zhu GF, Milne R, Wachira FN, Wu ZY, Wang H, Gao LM, Li DZ, Liu J. Determinants of Genetic Structure in a Highly Heterogeneous Landscape in Southwest China. Frontiers in Plant Science. 13: 779989. PMID 35574120 DOI: 10.3389/fpls.2022.779989 |
0.652 |
|
| 2022 |
Luo YH, Cadotte MW, Liu J, Burgess KS, Tan SL, Ye LJ, Zou JY, Chen ZZ, Jiang XL, Li J, Xu K, Li DZ, Gao LM. Multitrophic diversity and biotic associations influence subalpine forest ecosystem multifunctionality. Ecology. e3745. PMID 35522230 DOI: 10.1002/ecy.3745 |
0.639 |
|
| 2022 |
Liu R, Wang H, Yang JB, Corlett RT, Randle CP, Li DZ, Yu WB. Cryptic Species Diversification of the Complex (Orobanchaceae) in the Mountains of Southwest China Since the Pliocene. Frontiers in Plant Science. 13: 811206. PMID 35401620 DOI: 10.3389/fpls.2022.811206 |
0.351 |
|
| 2022 |
Wu H, Yang JB, Liu JX, Li DZ, Ma PF. Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales. Frontiers in Plant Science. 12: 824672. PMID 35173754 DOI: 10.3389/fpls.2021.824672 |
0.617 |
|
| 2022 |
Shi C, Wang S, Cai HH, Zhang HR, Long XX, Tihelka E, Song WC, Feng Q, Jiang RX, Cai CY, Lombard N, Li X, Yuan J, Zhu JP, Yang HY, ... ... Li DZ, et al. Fire-prone Rhamnaceae with South African affinities in Cretaceous Myanmar amber. Nature Plants. PMID 35102275 DOI: 10.1038/s41477-021-01091-w |
0.351 |
|
| 2022 |
Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang CH, Li DZ, Ge S, Ma H. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C 4 photosynthesis. Molecular Plant. PMID 35093593 DOI: 10.1016/j.molp.2022.01.015 |
0.689 |
|
| 2021 |
Wambulwa MC, Fan PZ, Milne R, Wu ZY, Luo YH, Wang YH, Wang H, Gao LM, Xiahou ZY, Jin YC, Ye LJ, Xu ZC, Yang ZC, Li DZ, Liu J. Genetic analysis of walnut cultivars from southwest China: Implications for germplasm improvement. Plant Diversity. 44: 530-541. PMID 36540707 DOI: 10.1016/j.pld.2021.08.005 |
0.621 |
|
| 2021 |
Zuo ZY, Zhao T, Du XY, Xiong Y, Lu JM, Li DZ. A revision of sect. (Dryopteridaceae) based on morphological and molecular evidence with description of a new species. Plant Diversity. 44: 181-190. PMID 35505984 DOI: 10.1016/j.pld.2021.09.005 |
0.338 |
|
| 2021 |
Zhong MC, Jiang XD, Yang GQ, Cui WH, Suo ZQ, Wang WJ, Sun YB, Wang D, Cheng XC, Li XM, Dong X, Tang KX, Li DZ, Hu JY. Rose without prickle: genomic insights linked to moisture adaptation. National Science Review. 8: nwab092. PMID 34987840 DOI: 10.1093/nsr/nwab092 |
0.802 |
|
| 2021 |
Huang Y, Chen J, Dong C, Sosa D, Xia S, Ouyang Y, Fan C, Li D, Mortola E, Long M, Bergelson J. Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection. The Plant Cell. PMID 34875081 DOI: 10.1093/plcell/koab291 |
0.346 |
|
| 2021 |
Li HT, Luo Y, Gan L, Ma PF, Gao LM, Yang JB, Cai J, Gitzendanner MA, Fritsch PW, Zhang T, Jin JJ, Zeng CX, Wang H, Yu WB, Zhang R, ... ... Li DZ, et al. Plastid phylogenomic insights into relationships of all flowering plant families. Bmc Biology. 19: 232. PMID 34711223 DOI: 10.1186/s12915-021-01166-2 |
0.728 |
|
| 2021 |
Zhao YH, Lázaro A, Li HD, Tao ZB, Liang H, Zhou W, Ren ZX, Xu K, Li DZ, Wang H. Morphological trait matching in plant-Hymenoptera and plant-Diptera mutualisms across an elevational gradient. The Journal of Animal Ecology. PMID 34668568 DOI: 10.1111/1365-2656.13614 |
0.319 |
|
| 2021 |
Jin G, Ma PF, Wu X, Gu L, Long M, Zhang C, Li DZ. New Genes Interacted with Recent Whole Genome Duplicates in the Fast Stem Growth of Bamboos. Molecular Biology and Evolution. PMID 34581782 DOI: 10.1093/molbev/msab288 |
0.583 |
|
| 2021 |
Du XY, Lu JM, Zhang LB, Wen J, Kuo LY, Mynssen CM, Schneider H, Li DZ. Simultaneous diversification of Polypodiales and angiosperms in the Mesozoic. Cladistics : the International Journal of the Willi Hennig Society. 37: 518-539. PMID 34570931 DOI: 10.1111/cla.12457 |
0.318 |
|
| 2021 |
Wambulwa MC, Milne R, Wu ZY, Spicer RA, Provan J, Luo YH, Zhu GF, Wang WT, Wang H, Gao LM, Li DZ, Liu J. Spatiotemporal maintenance of flora in the Himalaya biodiversity hotspot: Current knowledge and future perspectives. Ecology and Evolution. 11: 10794-10812. PMID 34429882 DOI: 10.1002/ece3.7906 |
0.637 |
|
| 2021 |
Fu CN, Mo ZQ, Yang JB, Cai J, Ye LJ, Zou JY, Qin HT, Zheng W, Hollingsworth PM, Li DZ, Gao LM. Testing genome skimming for species discrimination in the large and taxonomically difficult genus Rhododendron. Molecular Ecology Resources. PMID 34310851 DOI: 10.1111/1755-0998.13479 |
0.72 |
|
| 2021 |
Stull GW, Qu XJ, Parins-Fukuchi C, Yang YY, Yang JB, Yang ZY, Hu Y, Ma H, Soltis PS, Soltis DE, Li DZ, Smith SA, Yi TS. Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms. Nature Plants. PMID 34282286 DOI: 10.1038/s41477-021-00964-4 |
0.448 |
|
| 2021 |
Li X, Yang JB, Wang H, Song Y, Corlett RT, Yao X, Li DZ, Yu WB. Plastid NDH Pseudogenization and Gene Loss in a Recently Derived Lineage from the Largest Hemiparasitic Plant Genus Pedicularis (Orobanchaceae). Plant & Cell Physiology. PMID 34046678 DOI: 10.1093/pcp/pcab074 |
0.421 |
|
| 2021 |
Ye LJ, Mӧller M, Luo YH, Zou JY, Zheng W, Wang YH, Liu J, Zhu AD, Hu JY, Li DZ, Gao LM. Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complex. Bmc Plant Biology. 21: 204. PMID 33910529 DOI: 10.1186/s12870-021-02977-9 |
0.762 |
|
| 2021 |
Wu H, Ma PF, Li HT, Hu GX, Li DZ. Comparative plastomic analysis and insights into the phylogeny of (Lamiaceae). Plant Diversity. 43: 15-26. PMID 33778221 DOI: 10.1016/j.pld.2020.07.004 |
0.633 |
|
| 2021 |
Ma PF, Liu YL, Jin GH, Liu JX, Wu H, He J, Guo ZH, Li DZ. The Pharus latifolius genome bridges the gap of early grass evolution. The Plant Cell. PMID 33630094 DOI: 10.1093/plcell/koab015 |
0.742 |
|
| 2021 |
Ye JW, Li DZ. Distinct late Pleistocene subtropical-tropical divergence revealed by fifteen low-copy nuclear genes in a dominant species in South-East China. Scientific Reports. 11: 4147. PMID 33603069 DOI: 10.1038/s41598-021-83473-w |
0.316 |
|
| 2021 |
Yu Y, Li HT, Wu YH, Li DZ. Correlation Analysis Reveals an Important Role of GC Content in Accumulation of Deletion Mutations in the Coding Region of Angiosperm Plastomes. Journal of Molecular Evolution. PMID 33433638 DOI: 10.1007/s00239-020-09987-5 |
0.308 |
|
| 2020 |
Wang X, Wang Y, Yang G, Zhao L, Zhang X, Li D, Guo Z. Complementary Transcriptome and Proteome Analyses Provide Insight into the Floral Transition in Bamboo ( Munro). International Journal of Molecular Sciences. 21. PMID 33182654 DOI: 10.3390/ijms21228430 |
0.786 |
|
| 2020 |
Guo C, Ma PF, Yang GQ, Ye XY, Guo Y, Liu JX, Liu YL, Eaton DAR, Guo ZH, Li DZ. Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos. Systematic Biology. PMID 33057686 DOI: 10.1093/sysbio/syaa076 |
0.815 |
|
| 2020 |
Haevermans T, Mantuano D, Zhou MY, Lamxay V, Haevermans A, Blanc P, Li DZ. Discovery of the first succulent bamboo (Poaceae, Bambusoideae) in a new genus from Laos' karst areas, with a unique adaptation to seasonal drought. Phytokeys. 156: 125-137. PMID 32913413 DOI: 10.3897/phytokeys.156.51636 |
0.328 |
|
| 2020 |
Möller M, Liu J, Li Y, Li JH, Ye LJ, Mill R, Thomas P, Li DZ, Gao LM. Repeated intercontinental migrations and recurring hybridizations characterise the evolutionary history of yew (Taxus L.). Molecular Phylogenetics and Evolution. 106952. PMID 32889136 DOI: 10.1016/J.Ympev.2020.106952 |
0.689 |
|
| 2020 |
Wang XJ, Barrett SCH, Zhong L, Wu ZK, Li DZ, Wang H, Zhou W. The Genomic Selfing Syndrome Accompanies the Evolutionary Breakdown of Heterostyly. Molecular Biology and Evolution. PMID 32761213 DOI: 10.1093/Molbev/Msaa199 |
0.331 |
|
| 2020 |
Liu F, Fan W, Yang JB, Xiang CL, Mower JP, Li DZ, Zhu A. Episodic and GC-biased bursts of intragenomic and interspecific synonymous divergence in Ajugoideae (Lamiaceae) mitogenomes. The New Phytologist. PMID 32558926 DOI: 10.1111/Nph.16753 |
0.318 |
|
| 2020 |
Li CJ, Wang RN, Li DZ. Comparative analysis of plastid genomes within the Campanulaceae and phylogenetic implications. Plos One. 15: e0233167. PMID 32407424 DOI: 10.1371/journal.pone.0233167 |
0.451 |
|
| 2020 |
Xu ZC, Jin YC, Milne RI, Xiahou ZY, Qin HT, Ye LJ, Gao LM, Liu J, Li DZ. Development of 32 novel microsatellite loci in using genomic data. Applications in Plant Sciences. 8: e11328. PMID 32185119 DOI: 10.1002/Aps3.11328 |
0.692 |
|
| 2020 |
Zhang R, Wang YH, Jin JJ, Stull GW, Bruneau A, Cardoso D, de Queiroz LP, Moore MJ, Zhang SD, Chen SY, Wang J, Li DZ, Yi TS. Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae. Systematic Biology. PMID 32065640 DOI: 10.1093/Sysbio/Syaa013 |
0.301 |
|
| 2020 |
Liu JX, Zhou MY, Yang GQ, Zhang YX, Ma PF, Vorontsova MS, Li DZ. ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution. 106758. PMID 32028031 DOI: 10.1016/j.ympev.2020.106758 |
0.812 |
|
| 2020 |
Chen K, Burgess KS, He F, Yang X, Gao L, Li D. Seed traits and phylogeny explain plant distribution at largegeographic scale Biogeosciences Discussions. 1-23. DOI: 10.5194/Bg-2020-186 |
0.644 |
|
| 2019 |
Du XY, Lu JM, Lu SG, Li DZ. Complete plastome of an endemic fern species from China: (Polypodiaceae). Mitochondrial Dna. Part B, Resources. 4: 2394-2395. PMID 33365559 DOI: 10.1080/23802359.2018.1532840 |
0.345 |
|
| 2019 |
Xu W, Yang T, Qiu L, Chapman MA, Li DZ, Liu A. Genomic analysis reveals rich genetic variation and potential targets of selection during domestication of castor bean from perennial woody tree to annual semi-woody crop. Plant Direct. 3: e00173. PMID 31641699 DOI: 10.1002/pld3.173 |
0.38 |
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| 2019 |
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Yu WB, Randle CP, Lu L, Wang H, Yang JB, dePamphilis CW, Corlett RT, Li DZ. The Hemiparasitic Plant(Orobanchaceae) Is Polyphyletic and Contains Cryptic Species in the Hengduan Mountains of Southwest China. Frontiers in Plant Science. 9: 142. PMID 29479366 DOI: 10.3389/fpls.2018.00142 |
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Meegahakumbura MK, Wambulwa MC, Li MM, Thapa KK, Sun YS, Möller M, Xu JC, Yang JB, Liu J, Liu BY, Li DZ, Gao LM. Domestication Origin and Breeding History of the Tea Plant (Camellia sinensis) in China and India Based on Nuclear Microsatellites and cpDNA Sequence Data. Frontiers in Plant Science. 8: 2270. PMID 29422908 DOI: 10.3389/Fpls.2017.02270 |
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Wambulwa MC, Meegahakumbura MK, Kamunya S, Muchugi A, Möller M, Liu J, Xu JC, Li DZ, Gao LM. Multiple origins and a narrow genepool characterise the African tea germplasm: concordant patterns revealed by nuclear and plastid DNA markers. Scientific Reports. 7: 4053. PMID 28642589 DOI: 10.1038/S41598-017-04228-0 |
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Yu XQ, Drew BT, Yang JB, Gao LM, Li DZ. Comparative chloroplast genomes of eleven Schima (Theaceae) species: Insights into DNA barcoding and phylogeny. Plos One. 12: e0178026. PMID 28575004 DOI: 10.1371/journal.pone.0178026 |
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Yan LJ, Burgess KS, Milne R, Fu CN, Li DZ, Gao LM. Asymmetrical natural hybridization varies among hybrid swarms between two diploid Rhododendron species. Annals of Botany. PMID 28444136 DOI: 10.1093/Aob/Mcx039 |
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Zhang MY, Fritsch PW, Ma PF, Wang H, Lu L, Li DZ. Plastid Phylogenomics and Adaptive Evolution of Gaultheria series Trichophyllae (Ericaceae), a Clade from Sky Islands of the Himalaya-Hengduan Mountains. Molecular Phylogenetics and Evolution. PMID 28215572 DOI: 10.1016/j.ympev.2017.01.015 |
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Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS. Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. The New Phytologist. PMID 28186635 DOI: 10.1111/Nph.14461 |
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Yang MQ, Li DZ, Wen J, Yi TS. Phylogeny and biogeography of the amphi-Pacific genus Aphananthe. Plos One. 12: e0171405. PMID 28170425 DOI: 10.1371/Journal.Pone.0171405 |
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Zhao L, Li X, Zhang N, Zhang SD, Yi TS, Ma H, Guo ZH, Li DZ. Phylogenomic Analyses of Large-scale Nuclear Genes Provide New Insights into the Evolutionary Relationships within the Rosids. Molecular Phylogenetics and Evolution. PMID 27369455 DOI: 10.1016/J.Ympev.2016.06.007 |
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Zhang YX, Ye XY, Yang HM, Zhang XZ, Wang PY, Li DZ. New distribution records of two bamboo species in Yunnan, China with description of the inflorescence for Melocalamus yunnanensis (Poaceae, Bambusoideae). Phytokeys. 41-56. PMID 27212881 DOI: 10.3897/phytokeys.62.7276 |
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Luo YH, Liu J, Tan SL, Cadotte MW, Wang YH, Xu K, Li DZ, Gao LM. Trait-Based Community Assembly along an Elevational Gradient in Subalpine Forests: Quantifying the Roles of Environmental Factors in Inter- and Intraspecific Variability. Plos One. 11: e0155749. PMID 27191402 DOI: 10.1371/journal.pone.0155749 |
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Luo Y, Ma PF, Li HT, Yang JB, Wang H, Li DZ. Plastid phylogenomic analyses resolve Tofieldiaceae as the root of the early diverging monocot order Alismatales. Genome Biology and Evolution. PMID 26957030 DOI: 10.1093/gbe/evv260 |
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Raskoti BB, Jin WT, Xiang XG, Schuiteman A, Li DZ, Li JW, Huang WC, Jin XH, Huang LQ. A phylogenetic analysis of molecular and morphological characters of Herminium (Orchidaceae, Orchideae): evolutionary relationships, taxonomy, and patterns of character evolution. Cladistics : the International Journal of the Willi Hennig Society. 32: 198-210. PMID 34736301 DOI: 10.1111/cla.12125 |
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Zhang XZ, Zeng CX, Ma PF, Haevermans T, Zhang YX, Zhang LN, Guo ZH, Li DZ. Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution. PMID 26723898 DOI: 10.1016/j.ympev.2015.11.025 |
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Cai J, Ma PF, Li HT, Li DZ. Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications. Plos One. 10: e0142705. PMID 26566230 DOI: 10.1371/journal.pone.0142705 |
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Wu ZY, Milne RI, Chen CJ, Liu J, Wang H, Li DZ. Ancestral State Reconstruction Reveals Rampant Homoplasy of Diagnostic Morphological Characters in Urticaceae, Conflicting with Current Classification Schemes. Plos One. 10: e0141821. PMID 26529598 DOI: 10.1371/journal.pone.0141821 |
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Li HL, Wang W, Mortimer PE, Li RQ, Li DZ, Hyde KD, Xu JC, Soltis DE, Chen ZD. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Scientific Reports. 5: 14023. PMID 26354898 DOI: 10.1038/Srep14023 |
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Yu WB, Liu ML, Wang H, Mill RR, Ree RH, Yang JB, Li DZ. Towards a comprehensive phylogeny of the large temperate genus Pedicularis (Orobanchaceae), with an emphasis on species from the Himalaya-Hengduan Mountains. Bmc Plant Biology. 15: 176. PMID 26159907 DOI: 10.1186/S12870-015-0547-9 |
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Ma PF, Zhang YX, Guo ZH, Li DZ. Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus. Scientific Reports. 5: 11608. PMID 26100509 DOI: 10.1038/srep11608 |
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Xu S, Li D, Li J, Xiang X, Jin W, Huang W, Jin X, Huang L. Evaluation of the DNA barcodes in Dendrobium (Orchidaceae) from mainland Asia. Plos One. 10: e0115168. PMID 25602282 DOI: 10.1371/journal.pone.0115168 |
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Yan LJ, Liu J, Möller M, Zhang L, Zhang XM, Li DZ, Gao LM. DNA barcoding of Rhododendron (Ericaceae), the largest Chinese plant genus in biodiversity hotspots of the Himalaya-Hengduan Mountains. Molecular Ecology Resources. 15: 932-44. PMID 25469426 DOI: 10.1111/1755-0998.12353 |
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Xia K, Hill LM, Li DZ, Walters C. Factors affecting stress tolerance in recalcitrant embryonic axes from seeds of four Quercus (Fagaceae) species native to the USA or China. Annals of Botany. 114: 1747-59. PMID 25326139 DOI: 10.1093/aob/mcu193 |
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Ma PF, Zhang YX, Zeng CX, Guo ZH, Li DZ. Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae). Systematic Biology. 63: 933-50. PMID 25092479 DOI: 10.1093/sysbio/syu054 |
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Xie L, Yang ZY, Wen J, Li DZ, Yi TS. Biogeographic history of Pistacia (Anacardiaceae), emphasizing the evolution of the Madrean-Tethyan and the eastern Asian-Tethyan disjunctions. Molecular Phylogenetics and Evolution. 77: 136-46. PMID 24747126 DOI: 10.1016/J.Ympev.2014.04.006 |
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Yang JB, Li DZ, Li HT. Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs. Molecular Ecology Resources. 14: 1024-31. PMID 24620934 DOI: 10.1111/1755-0998.12251 |
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Zhang LN, Zhang XZ, Zhang YX, Zeng CX, Ma PF, Zhao L, Guo ZH, Li DZ. Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae). Molecular Ecology Resources. 14: 988-99. PMID 24606129 DOI: 10.1111/1755-0998.12248 |
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Yang JB, Yang SX, Li HT, Yang J, Li DZ. Comparative chloroplast genomes of camellia species. Plos One. 8: e73053. PMID 24009730 DOI: 10.1371/journal.pone.0073053 |
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Wu ZY, Monro AK, Milne RI, Wang H, Yi TS, Liu J, Li DZ. Molecular phylogeny of the nettle family (Urticaceae) inferred from multiple loci of three genomes and extensive generic sampling. Molecular Phylogenetics and Evolution. 69: 814-27. PMID 23850510 DOI: 10.1016/J.Ympev.2013.06.022 |
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Zhao L, Zhang N, Ma PF, Liu Q, Li DZ, Guo ZH. Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae. Plos One. 8: e64642. PMID 23734211 DOI: 10.1371/journal.pone.0064642 |
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Liu J, Möller M, Provan J, Gao LM, Poudel RC, Li DZ. Geological and ecological factors drive cryptic speciation of yews in a biodiversity hotspot. The New Phytologist. 199: 1093-108. PMID 23718262 DOI: 10.1111/nph.12336 |
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Yang JB, Tang M, Li HT, Zhang ZR, Li DZ. Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses. Bmc Evolutionary Biology. 13: 84. PMID 23597078 DOI: 10.1186/1471-2148-13-84 |
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Yang HM, Zhang YX, Yang JB, Li DZ. The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers. Molecular Phylogenetics and Evolution. 68: 340-56. PMID 23583782 DOI: 10.1016/j.ympev.2013.04.002 |
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Poudel RC, Gao LM, Möller M, Baral SR, Uprety Y, Liu J, Li DZ. Yews (Taxus) along the Hindu Kush-Himalayan region: exploring the ethnopharmacological relevance among communities of Mongol and Caucasian origins. Journal of Ethnopharmacology. 147: 190-203. PMID 23473867 DOI: 10.1016/j.jep.2013.02.031 |
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Zhao YH, Larson-Rabin Z, Wang GY, Möller M, Li CY, Zhang JP, Li HT, Li DZ. Developmental genetics of the perianthless flowers and bracts of a paleoherb species, Saururus chinensis. Plos One. 8: e53019. PMID 23382831 DOI: 10.1371/journal.pone.0053019 |
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Gao LM, Zhang ZR, Zhou P, Möller M, Li DZ. Microsatellite markers developed for Corallodiscus lanuginosus (Gesneriaceae) and their cross-species transferability. American Journal of Botany. 99: e490-2. PMID 23204490 DOI: 10.3732/ajb.1200178 |
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Liu J, Provan J, Gao LM, Li DZ. Sampling strategy and potential utility of indels for DNA barcoding of closely related plant species: a case study in taxus. International Journal of Molecular Sciences. 13: 8740-51. PMID 22942731 DOI: 10.3390/ijms13078740 |
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Zhang XM, Zhao L, Larson-Rabin Z, Li DZ, Guo ZH. De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). Plos One. 7: e42082. PMID 22916120 DOI: 10.1371/journal.pone.0042082 |
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Ma PF, Guo ZH, Li DZ. Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses. Plos One. 7: e30297. PMID 22272330 DOI: 10.1371/journal.pone.0030297 |
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Lu JM, Wen J, Lutz S, Wang YP, Li DZ. Phylogenetic relationships of Chinese Adiantum based on five plastid markers. Journal of Plant Research. 125: 237-49. PMID 21809178 DOI: 10.1007/s10265-011-0441-y |
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| 2011 |
Zhang YJ, Ma PF, Li DZ. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). Plos One. 6: e20596. PMID 21655229 DOI: 10.1371/journal.pone.0020596 |
0.631 |
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| 2011 |
Liu J, Gao LM, Li DZ, Zhang DQ, Möller M. Cross-species amplification and development of new microsatellite loci for Taxus wallichiana (Taxaceae). American Journal of Botany. 98: e70-3. PMID 21613149 DOI: 10.3732/ajb.1000445 |
0.647 |
|
| 2010 |
Liu J, Möller M, Gao LM, Zhang DQ, Li DZ. DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species. Molecular Ecology Resources. 11: 89-100. PMID 21429104 DOI: 10.1111/j.1755-0998.2010.02907.x |
0.662 |
|
| 2010 |
Lu L, Fritsch PW, Cruz BC, Wang H, Li DZ. Reticulate evolution, cryptic species, and character convergence in the core East Asian clade of Gaultheria (Ericaceae). Molecular Phylogenetics and Evolution. 57: 364-79. PMID 20558306 DOI: 10.1016/j.ympev.2010.06.002 |
0.395 |
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| 2010 |
Zeng CX, Zhang YX, Triplett JK, Yang JB, Li DZ. Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence. Molecular Phylogenetics and Evolution. 56: 821-39. PMID 20381627 DOI: 10.1016/J.Ympev.2010.03.041 |
0.422 |
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| 2010 |
He J, Wong KL, Shaw PC, Wang H, Li DZ. Identification of the medicinal plants in Aconitum L. by DNA barcoding technique. Planta Medica. 76: 1622-8. PMID 20217641 DOI: 10.1055/S-0029-1240967 |
0.368 |
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| 2010 |
Xie L, Yi TS, Li R, Li DZ, Wen J. Evolution and biogeographic diversification of the witch-hazel genus (Hamamelis L., Hamamelidaceae) in the Northern Hemisphere. Molecular Phylogenetics and Evolution. 56: 675-89. PMID 20171295 DOI: 10.1016/J.Ympev.2010.02.018 |
0.359 |
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| 2008 |
Yang HQ, Yang JB, Peng ZH, Gao J, Yang YM, Peng S, Li DZ. A molecular phylogenetic and fruit evolutionary analysis of the major groups of the paleotropical woody bamboos (Gramineae: Bambusoideae) based on nuclear ITS, GBSSI gene and plastid trnL-F DNA sequences. Molecular Phylogenetics and Evolution. 48: 809-24. PMID 18593600 DOI: 10.1016/j.ympev.2008.06.001 |
0.388 |
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| 2006 |
Xue CY, Li DZ, Lu JM, Yang JB, Liu JQ. Molecular authentication of the traditional Tibetan medicinal plant Swertia mussotii. Planta Medica. 72: 1223-6. PMID 17051455 DOI: 10.1055/s-2006-951695 |
0.358 |
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| 2006 |
Zhao Y, Wang G, Zhang J, Yang J, Peng S, Gao L, Li C, Hu J, Li D, Gao L. Expressed sequence tags (ESTs) and phylogenetic analysis of floral genes from a paleoherb species, Asarum caudigerum. Annals of Botany. 98: 157-63. PMID 16675604 DOI: 10.1093/aob/mcl081 |
0.803 |
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| 2005 |
Lu JM, Li DZ, Gao LM, Cheng X, Wu D. Paraphyly of Cyrtomium (Dryopteridaceae): evidence from rbcL and trnL-F sequence data. Journal of Plant Research. 118: 129-35. PMID 15818470 DOI: 10.1007/s10265-005-0201-y |
0.609 |
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| 2004 |
Guo ZH, Li DZ. Phylogenetics of the Thamnocalamus group and its allies (Gramineae: Bambusoideae): inference from the sequences of GBSSI gene and ITS spacer. Molecular Phylogenetics and Evolution. 30: 1-12. PMID 15022753 DOI: 10.1016/s1055-7903(03)00161-1 |
0.647 |
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| 2003 |
Meng SW, Chen ZD, Li DZ, Liang HX. Phylogeny of Saururaceae based on mitochondrial matR gene sequence data. Journal of Plant Research. 115: 71-6. PMID 12884129 DOI: 10.1007/s102650200011 |
0.397 |
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| 2002 |
Guo ZH, Chen YY, Li DZ. Phylogenetic studies on the Thamnocalamus group and its allies (Gramineae: Bambusoideae) based on its sequence data. Molecular Phylogenetics and Evolution. 22: 20-30. PMID 11796026 DOI: 10.1006/mpev.2001.1039 |
0.629 |
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