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Nathan C. Rockwell - Publications

Affiliations: 
2005-2010 Molecular and Cellular Biology University of California, Davis, Davis, CA 
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73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Rockwell NC, Lagarias JC. Cyanobacteriochromes from Gloeobacterales Provide New Insight into the Diversification of Cyanobacterial Photoreceptors. Journal of Molecular Biology. 168313. PMID 37839679 DOI: 10.1016/j.jmb.2023.168313  0.619
2023 Rockwell NC, Lagarias JC. GUN4 appeared early in cyanobacterial evolution. Pnas Nexus. 2: pgad131. PMID 37152672 DOI: 10.1093/pnasnexus/pgad131  0.529
2023 Rockwell NC, Martin SS, Lagarias JC. Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins. Proceedings of the National Academy of Sciences of the United States of America. 120: e2300770120. PMID 37071675 DOI: 10.1073/pnas.2300770120  0.56
2022 Rockwell NC, Moreno MV, Martin SS, Lagarias JC. Protein-chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 21: 471-491. PMID 35411484 DOI: 10.1007/s43630-022-00213-3  0.819
2021 Blain-Hartung M, Rockwell NC, Lagarias JC. Natural diversity provides a broad spectrum of cyanobacteriochrome-based diguanylate cyclases. Plant Physiology. 187: 632-645. PMID 34608946 DOI: 10.1093/PLPHYS/KIAB240  0.805
2021 Zhang W, Willows RD, Deng R, Li Z, Li M, Wang Y, Guo Y, Shi W, Fan Q, Martin SS, Rockwell NC, Lagarias JC, Duanmu D. Bilin-dependent regulation of chlorophyll biosynthesis by GUN4. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33975960 DOI: 10.1073/pnas.2104443118  0.749
2021 Bandara S, Rockwell NC, Zeng X, Ren Z, Wang C, Shin H, Martin SS, Moreno MV, Lagarias JC, Yang X. Crystal structure of a far-red-sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33727422 DOI: 10.1073/pnas.2025094118  0.831
2020 Moreno MV, Rockwell NC, Mora M, Fisher AJ, Lagarias JC. A far-red cyanobacteriochrome lineage specific for verdins. Proceedings of the National Academy of Sciences of the United States of America. PMID 33106421 DOI: 10.1073/pnas.2016047117  0.806
2020 Fushimi K, Hasegawa M, Ito T, Rockwell NC, Enomoto G, -Win NN, Lagarias JC, Ikeuchi M, Narikawa R. Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571944 DOI: 10.1073/Pnas.2004273117  0.647
2019 Rockwell NC, Lagarias JC. Phytochrome Evolution in 3D: Deletion, Duplication, and Diversification. The New Phytologist. PMID 31595505 DOI: 10.1111/Nph.16240  0.513
2018 Yang Y, Lam V, Adomako M, Simkovsky R, Jakob A, Rockwell NC, Cohen SE, Taton A, Wang J, Lagarias JC, Wilde A, Nobles DR, Brand JJ, Golden SS. Phototaxis in a wild isolate of the cyanobacterium . Proceedings of the National Academy of Sciences of the United States of America. PMID 30552139 DOI: 10.1073/Pnas.1812871115  0.64
2018 Blain-Hartung M, Rockwell NC, Moreno MV, Martin SS, Gan F, Bryant DA, Lagarias JC. Correction: Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells. The Journal of Biological Chemistry. 293: 13850. PMID 30194257 DOI: 10.1074/jbc.AAC118.005397  0.764
2018 Kirpich J, Mix LT, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1. The Journal of Physical Chemistry Letters. PMID 29874080 DOI: 10.1021/Acs.Jpclett.8B01133  0.551
2018 Kirpich J, Chang CW, Madsen D, Gottlieb SM, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Non-Canonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme. Biochemistry. PMID 29633829 DOI: 10.1021/Acs.Biochem.7B01252  0.607
2018 Lim S, Yu Q, Gottlieb SM, Chang CW, Rockwell NC, Martin SS, Madsen D, Lagarias JC, Larsen DS, Ames JB. Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4. Proceedings of the National Academy of Sciences of the United States of America. 115: 4387-4392. PMID 29632180 DOI: 10.1073/Pnas.1720682115  0.598
2018 Blain-Hartung M, Rockwell NC, Moreno MV, Martin SS, Gan F, Bryant DA, Lagarias JC. Cyanobacteriochrome-based photoswitchable adenylyl cyclases (cPACs) for broad spectrum light regulation of cAMP levels in cells. The Journal of Biological Chemistry. PMID 29632072 DOI: 10.1074/Jbc.Ra118.002258  0.793
2017 Blain-Hartung MD, Rockwell NC, Lagarias JC. Light-regulated synthesis of cyclic-di-GMP by a bidomain construct of the cyanobacteriochrome Tlr0924 (SesA) without stable dimerization. Biochemistry. PMID 29072834 DOI: 10.1021/Acs.Biochem.7B00734  0.806
2017 Rockwell NC, Lagarias JC. Ferredoxin-dependent bilin reductases in eukaryotic algae: Ubiquity and diversity. Journal of Plant Physiology. PMID 28641882 DOI: 10.1016/J.Jplph.2017.05.022  0.559
2017 Rockwell NC, Lagarias JC. Phytochrome diversification in cyanobacteria and eukaryotic algae. Current Opinion in Plant Biology. 37: 87-93. PMID 28445833 DOI: 10.1016/J.Pbi.2017.04.003  0.605
2017 Duanmu D, Rockwell NC, Clark Lagarias J. Algal light sensing and photoacclimation in aquatic environments. Plant, Cell & Environment. PMID 28245058 DOI: 10.1111/Pce.12943  0.742
2017 Rockwell NC, Martin SS, Li FW, Mathews S, Lagarias JC. The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2. The New Phytologist. PMID 28106912 DOI: 10.1111/nph.14422  0.596
2017 Rockwell NC, Martin SS, Lagarias JC. There and Back Again: Loss and Reacquisition of Two-Cys Photocycles in Cyanobacteriochromes. Photochemistry and Photobiology. PMID 28055111 DOI: 10.1111/php.12708  0.653
2016 Fushimi K, Rockwell NC, Enomoto G, Ni-Ni-Win, Martin SS, Gan F, Bryant DA, Ikeuchi M, Lagarias JC, Narikawa R. Cyanobacteriochrome Photoreceptors Lacking the Canonical Cys Residue. Biochemistry. PMID 27935696 DOI: 10.1021/Acs.Biochem.6B00940  0.655
2016 Rockwell NC, Martin SS, Lagarias JC. Identification of cyanobacteriochromes detecting far-red light. Biochemistry. PMID 27295035 DOI: 10.1021/Acs.Biochem.6B00299  0.657
2016 Lim S, Yu Q, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 13C, and 15N chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state. Biomolecular Nmr Assignments. 10: 157-61. PMID 26537963 DOI: 10.1007/S12104-015-9657-4  0.575
2016 Yu Q, Lim S, Rockwell NC, Martin SS, Clark Lagarias J, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpR6012g4 in the red-absorbing dark state. Biomolecular Nmr Assignments. 10: 139-42. PMID 26482922 DOI: 10.1007/S12104-015-9653-8  0.378
2016 Chang CW, Gottlieb SM, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Tracking the secondary photodynamics of the green/red cyanobacteriochrome RcaE from Fremyella diplosiphon Chemical Physics Letters. 644: 225-230. DOI: 10.1016/J.Cplett.2015.11.059  0.469
2015 Berlin S, Carroll EC, Newman ZL, Okada HO, Quinn CM, Kallman B, Rockwell NC, Martin SS, Lagarias JC, Isacoff EY. Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging. Nature Methods. PMID 26167640 DOI: 10.1038/Nmeth.3480  0.459
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct. Biochemistry. 54: 3772-83. PMID 25989712 DOI: 10.1021/Acs.Biochem.5B00438  0.608
2015 Rockwell NC, Martin SS, Lim S, Lagarias JC, Ames JB. Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates. Biochemistry. 54: 2581-600. PMID 25843271 DOI: 10.1021/Bi501548T  0.628
2015 Rockwell NC, Martin SS, Lagarias JC. Identification of DXCF cyanobacteriochrome lineages with predictable photocycles. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 929-41. PMID 25738434 DOI: 10.1039/C4Pp00486H  0.614
2015 Gottlieb SM, Kim PW, Chang CW, Hanke SJ, Hayer RJ, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes. Biochemistry. 54: 1028-42. PMID 25545467 DOI: 10.1021/Bi5012755  0.676
2015 Rockwell NC, Martin SS, Gan F, Bryant DA, Lagarias JC. NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 258-69. PMID 25342233 DOI: 10.1039/C4Pp00336E  0.644
2014 Gottlieb SM, Chang CW, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome. The Journal of Physical Chemistry Letters. 5: 1527-33. PMID 26270091 DOI: 10.1021/Jz500378N  0.601
2014 Rockwell NC, Lagarias JC, Bhattacharya D. Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in Ecology and Evolution. 2. PMID 25729749 DOI: 10.3389/Fevo.2014.00066  0.592
2014 Duanmu D, Bachy C, Sudek S, Wong CH, Jiménez V, Rockwell NC, Martin SS, Ngan CY, Reistetter EN, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ. Marine algae and land plants share conserved phytochrome signaling systems. Proceedings of the National Academy of Sciences of the United States of America. 111: 15827-32. PMID 25267653 DOI: 10.1073/Pnas.1416751111  0.788
2014 Gan F, Zhang S, Rockwell NC, Martin SS, Lagarias JC, Bryant DA. Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light. Science (New York, N.Y.). 345: 1312-7. PMID 25214622 DOI: 10.1126/Science.1256963  0.62
2014 Chen A, Li C, Hu W, Lau MY, Lin H, Rockwell NC, Martin SS, Jernstedt JA, Lagarias JC, Dubcovsky J. Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod. Proceedings of the National Academy of Sciences of the United States of America. 111: 10037-44. PMID 24961368 DOI: 10.1073/Pnas.1409795111  0.597
2014 Kim PW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Heterogeneous photodynamics of the Pfr state in the cyanobacterial phytochrome Cph1 Biochemistry. 53: 4601-4611. PMID 24940993 DOI: 10.1021/Bi5005359  0.545
2014 Rockwell NC, Martin SS, Gulevich AG, Lagarias JC. Conserved phenylalanine residues are required for blue-shifting of cyanobacteriochrome photoproducts Biochemistry. 53: 3118-3130. PMID 24766217 DOI: 10.1021/Bi500037A  0.818
2014 Lim S, Rockwell NC, Martin SS, Dallas JL, Lagarias JC, Ames JB. Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected]. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 13: 951-62. PMID 24745038 DOI: 10.1039/C3Pp50442E  0.639
2014 Kim PW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome cph1 Biochemistry. 53: 2818-2826. PMID 24742290 DOI: 10.1021/Bi500108S  0.564
2014 Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, Worden AZ, Lagarias JC. Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences of the United States of America. 111: 3871-6. PMID 24567382 DOI: 10.1073/Pnas.1401871111  0.8
2014 Gottlieb SM, Kim PW, Corley SC, Madsen D, Hanke SJ, Chang CW, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Primary and secondary photodynamics of the violet/orange dual-cysteine NpF2164g3 cyanobacteriochrome domain from Nostoc punctiforme Biochemistry. 53: 1029-1040. PMID 24437620 DOI: 10.1021/Bi4015538  0.599
2014 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. ¹H, ¹⁵N, and ¹³C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state. Biomolecular Nmr Assignments. 8: 259-62. PMID 23749453 DOI: 10.1007/S12104-013-9496-0  0.627
2014 Gottlieb SM, Chang CW, Martin SS, Rockwell NC, Lagarias JC, Larsen DS. Optically guided photoactivity: Coordinating tautomerization, photoisomerization, inhomogeneity, and reactive intermediates within the RcaE cyanobacteriochrome Journal of Physical Chemistry Letters. 5: 1527-1533. DOI: 10.1021/jz500378n  0.4
2013 Gottlieb SM, Kim PW, Rockwell NC, Hirose Y, Ikeuchi M, Lagarias JC, Larsen DS. Primary photodynamics of the green/red-absorbing photoswitching regulator of the chromatic adaptation e domain from fremyella diplosiphon Biochemistry. 52: 8198-8208. PMID 24147541 DOI: 10.1021/Bi400946Q  0.619
2013 Kim PW, Rockwell NC, Freer LH, Chang CW, Martin SS, Lagarias JC, Larsen DS. Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multi-pulse Manipulations. The Journal of Physical Chemistry Letters. 4: 2605-2609. PMID 24143267 DOI: 10.1021/Jz401443Q  0.507
2013 Chang CW, Gottlieb SM, Kim PW, Rockwell NC, Lagarias JC, Larsen DS. Reactive ground-state pathways are not ubiquitous in red/green cyanobacteriochromes Journal of Physical Chemistry B. 117: 11229-11238. PMID 23725062 DOI: 10.1021/Jp402112U  0.531
2013 Hirose Y, Rockwell NC, Nishiyama K, Narikawa R, Ukaji Y, Inomata K, Lagarias JC, Ikeuchi M. Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle Proceedings of the National Academy of Sciences of the United States of America. 110: 4974-4979. PMID 23479641 DOI: 10.1073/Pnas.1302909110  0.657
2013 Duanmu D, Casero D, Dent RM, Gallaher S, Yang W, Rockwell NC, Martin SS, Pellegrini M, Niyogi KK, Merchant SS, Grossman AR, Lagarias JC. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proceedings of the National Academy of Sciences of the United States of America. 110: 3621-6. PMID 23345435 DOI: 10.1073/Pnas.1222375110  0.761
2013 Rockwell NC, Ohlendorf R, Möglich A. Cyanobacteriochromes in full color and three dimensions Proceedings of the National Academy of Sciences of the United States of America. 110: 806-807. PMID 23288903 DOI: 10.1073/Pnas.1220690110  0.427
2013 Kim PW, Rockwell NC, Freer LH, Chang CW, Martin SS, Lagarias JC, Larsen DS. Unraveling the primary isomerization dynamics in cyanobacterial phytochrome Cph1 with multipulse manipulations Journal of Physical Chemistry Letters. 4: 2605-2609. DOI: 10.1021/jz401443q  0.408
2013 Lim S, Rockwell NC, Martin SS, Lagarias JC, Ames JB. 1H, 15N, and 13C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state Biomolecular Nmr Assignments. 1-4. DOI: 10.1007/s12104-013-9496-0  0.444
2012 Kim PW, Pan J, Rockwell NC, Chang CW, Taylor KC, Lagarias JC, Larsen DS. Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome. Chemical Physics Letters. 549: 86-92. PMID 23554514 DOI: 10.1016/J.Cplett.2012.08.044  0.514
2012 Rockwell NC, Martin SS, Lagarias JC. Red/green cyanobacteriochromes: Sensors of color and power Biochemistry. 51: 9667-9677. PMID 23151047 DOI: 10.1021/Bi3013565  0.672
2012 Freer LH, Kim PW, Corley SC, Rockwell NC, Zhao L, Thibert AJ, Lagarias JC, Larsen DS. Chemical inhomogeneity in the ultrafast dynamics of the DXCF cyanobacteriochrome Tlr0924. The Journal of Physical Chemistry. B. 116: 10571-81. PMID 22721495 DOI: 10.1021/Jp302637U  0.595
2012 Rockwell NC, Martin SS, Lagarias JC. Mechanistic insight into the photosensory versatility of DXCF cyanobacteriochromes Biochemistry. 51: 3576-3585. PMID 22494320 DOI: 10.1021/Bi300171S  0.688
2012 Rockwell NC, Martin SS, Gulevich AG, Lagarias JC. Phycoviolobilin formation and spectral tuning in the DXCF cyanobacteriochrome subfamily Biochemistry. 51: 1449-1463. PMID 22279972 DOI: 10.1021/Bi201783J  0.842
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Femtosecond photodynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 2. Reverse dynamics Biochemistry. 51: 619-630. PMID 22148731 DOI: 10.1021/bi2017365  0.565
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Femtosecond photodynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 1. Forward dynamics Biochemistry. 51: 608-618. PMID 22148715 DOI: 10.1021/Bi201507K  0.614
2012 Kim PW, Freer LH, Rockwell NC, Martin SS, Lagarias JC, Larsen DS. Second-chance forward isomerization dynamics of the red/green cyanobacteriochrome NpR6012g4 from nostoc punctiforme Journal of the American Chemical Society. 134: 130-133. PMID 22107125 DOI: 10.1021/Ja209533X  0.509
2012 Freer LH, Kim PW, Corley SC, Rockwell NC, Zhao L, Thibert AJ, Lagarias JC, Larsen DS. Chemical inhomogeneity in the ultrafast dynamics of the DXCF cyanobacteriochrome Tlr0924 Journal of Physical Chemistry B. 116: 10571-10581. DOI: 10.1021/jp302637u  0.393
2011 Rockwell NC, Martin SS, Feoktistova K, Lagarias JC. Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes Proceedings of the National Academy of Sciences of the United States of America. 108: 11854-11859. PMID 21712441 DOI: 10.1073/Pnas.1107844108  0.682
2010 Shang L, Rockwell NC, Martin SS, Lagarias JC. Biliverdin amides reveal roles for propionate side chains in bilin reductase recognition and in holophytochrome assembly and photoconversion Biochemistry. 49: 6070-6082. PMID 20565135 DOI: 10.1021/Bi100756X  0.751
2010 Rockwell NC, Lagarias JC. A brief history of phytochromes Chemphyschem. 11: 1172-1180. PMID 20155775 DOI: 10.1002/Cphc.200900894  0.658
2009 Rockwell NC, Shang L, Martin SS, Lagarias JC. Distinct classes of red/far-red photochemistry within the phytochrome superfamily Proceedings of the National Academy of Sciences of the United States of America. 106: 6123-6127. PMID 19339496 DOI: 10.1073/Pnas.0902370106  0.784
2008 Rockwell NC, Njuguna SL, Roberts L, Castillo E, Parson VL, Dwojak S, Lagarias JC, Spiller SC. A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus Biochemistry. 47: 7304-7316. PMID 18549244 DOI: 10.1021/Bi800088T  0.646
2007 Rockwell NC, Lagarias JC. Flexible mapping of homology onto structure with homolmapper. Bmc Bioinformatics. 8: 123. PMID 17428344 DOI: 10.1186/1471-2105-8-123  0.462
2007 Tu SL, Rockwell NC, Lagarias JC, Fisher AJ. Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements Biochemistry. 46: 1484-1494. PMID 17279614 DOI: 10.1021/Bi062038F  0.742
2006 Rockwell NC, Su YS, Lagarias JC. Phytochrome structure and signaling mechanisms Annual Review of Plant Biology. 57: 837-858. PMID 16669784 DOI: 10.1146/Annurev.Arplant.56.032604.144208  0.811
2006 Rockwell NC, Lagarias JC. The structure of phytochrome: A picture is worth a thousand spectra Plant Cell. 18: 4-14. PMID 16387836 DOI: 10.1105/Tpc.105.038513  0.565
2005 Fischer AJ, Rockwell NC, Jang AY, Ernst LA, Waggoner AS, Duan Y, Lei H, Lagarias JC. Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes. Biochemistry. 44: 15203-15. PMID 16285723 DOI: 10.1021/Bi051633Z  0.681
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