Andrew Pohorille - Publications

Affiliations: 
1992-1996 Chemistry and Pharmaceutical Chemistry University of California, San Francisco, San Francisco, CA 
 1996- Center for Computational Astrobiology NASA Ames Research Center, Mountain View, CA, United States 
Area:
modeling the origins of life, computer simulations of biomolecular systems, modeling genetic and metabolic networks, and statistical mechanics of condensed phases
Website:
https://astrobiology.nasa.gov/nai/directory/pohorille-andrew/

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Wei C, Pohorille A. Sequence-Dependent Interfacial Adsorption and Permeation of Dipeptides across Phospholipid Membranes. The Journal of Physical Chemistry. B. PMID 28982244 DOI: 10.1021/acs.jpcb.7b08238  0.326
2015 Comer J, Gumbart JC, Hénin J, Lelièvre T, Pohorille A, Chipot C. The adaptive biasing force method: everything you always wanted to know but were afraid to ask. The Journal of Physical Chemistry. B. 119: 1129-51. PMID 25247823 DOI: 10.1021/Jp506633N  0.613
2010 Pohorille A, Jarzynski C, Chipot C. Good practices in free-energy calculations. The Journal of Physical Chemistry. B. 114: 10235-53. PMID 20701361 DOI: 10.1021/Jp102971X  0.566
2009 Wei C, Pohorille A. Permeation of membranes by ribose and its diastereomers. Journal of the American Chemical Society. 131: 10237-45. PMID 19621967 DOI: 10.1021/ja902531k  0.394
2008 Darve E, Rodríguez-Gómez D, Pohorille A. Adaptive biasing force method for scalar and vector free energy calculations. The Journal of Chemical Physics. 128: 144120. PMID 18412436 DOI: 10.1063/1.2829861  0.306
2005 Hénin J, Pohorille A, Chipot C. Insights into the recognition and association of transmembrane alpha-helices. The free energy of alpha-helix dimerization in glycophorin A. Journal of the American Chemical Society. 127: 8478-84. PMID 15941282 DOI: 10.1021/ja050581y  0.62
2004 Rodriguez-Gomez D, Darve E, Pohorille A. Assessing the efficiency of free energy calculation methods. The Journal of Chemical Physics. 120: 3563-78. PMID 15268518 DOI: 10.1063/1.1642607  0.31
2003 Pohorille A, Wilson MA, Chipot C. Membrane peptides and their role in protobiological evolution. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 33: 173-97. PMID 12967266  0.569
2002 Darve E, Wilson MA, Pohorille A. Calculating free energies using a scaled-force molecular dynamics algorithm Molecular Simulation. 28: 113-144. DOI: 10.1080/08927020211975  0.323
2000 New MH, Pohorille A. An inherited efficiencies model of non-genomic evolution Simulation Practice and Theory. 8: 99-108. DOI: 10.1016/S0928-4869(00)00002-1  0.5
1999 Chipot C, Wilson MA, Pohorille A. Interactions of anesthetics with the water-hexane interface. A molecular dynamics study. The Journal of Physical Chemistry. B. 101: 782-91. PMID 11542402 DOI: 10.1021/JP961513O  0.302
1998 Pohorille A, Cieplak P, Wilson MA. Interactions of anesthetics with the membrane-water interface. Chemical Physics. 204: 337-45. PMID 11540160 DOI: 10.1016/0301-0104(95)00292-8  0.325
1998 Pohorille A, Wilson MA, New MH, Chipot C. Concentrations of anesthetics across the water-membrane interface; the Meyer-Overton hypothesis revisited. Toxicology Letters. 100: 421-30. PMID 10049175 DOI: 10.1016/s0378-4274(98)00216-1  0.566
1996 Pohorille A, Chipot C, New MH, Wilson MA. Molecular modeling of protocellular functions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 550-69. PMID 9390258  0.58
1986 Pohorille A, Pratt LR. Theoretical methods for obtaining free energies of biomolecular equilibria in aqueous solutions. Methods in Enzymology. 127: 64-78. PMID 3736431 DOI: 10.1016/0076-6879(86)27007-X  0.308
1978 Pohorille A, Perahia D, Pullman B. Molecular orbital studies on the conformations of 8-amino- and 8-dimethylaminoadenosine 5'-monophosphate. Biochimica Et Biophysica Acta. 517: 511-6. PMID 626749 DOI: 10.1016/0005-2787(78)90217-4  0.441
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