| Year |
Citation |
Score |
| 2023 |
Gorbea Colón JJ, Palao L, Chen SF, Kim HJ, Snyder L, Chang YW, Tsai KL, Murakami K. Structural basis of a transcription pre-initiation complex on a divergent promoter. Molecular Cell. PMID 36731470 DOI: 10.1016/j.molcel.2023.01.011 |
0.523 |
|
| 2022 |
Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colón JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K. Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Molecular Cell. PMID 35051353 DOI: 10.1016/j.molcel.2021.12.020 |
0.638 |
|
| 2021 |
Faylo JL, van Eeuwen T, Kim HJ, Gorbea Colón JJ, Garcia BA, Murakami K, Christianson DW. Structural insight on assembly-line catalysis in terpene biosynthesis. Nature Communications. 12: 3487. PMID 34108468 DOI: 10.1038/s41467-021-23589-9 |
0.404 |
|
| 2021 |
van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K. Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair. Nature Communications. 12: 3338. PMID 34099686 DOI: 10.1038/s41467-021-23684-x |
0.445 |
|
| 2021 |
van Eeuwen T, Li T, Kim HJ, Gorbea Colón JJ, Parker MI, Dunbrack RL, Garcia BA, Tsai KL, Murakami K. Structure of TFIIK for phosphorylation of CTD of RNA polymerase II. Science Advances. 7. PMID 33827808 DOI: 10.1126/sciadv.abd4420 |
0.622 |
|
| 2021 |
Steimle S, van Eeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F. Cryo-EM structures of engineered active bc-cbb type CIIICIV super-complexes and electronic communication between the complexes. Nature Communications. 12: 929. PMID 33568648 DOI: 10.1038/s41467-021-21051-4 |
0.45 |
|
| 2021 |
Li YC, Chao TC, Kim HJ, Cholko T, Chen SF, Li G, Snyder L, Nakanishi K, Chang CE, Murakami K, Garcia BA, Boyer TG, Tsai KL. Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module. Science Advances. 7. PMID 33523904 DOI: 10.1126/sciadv.abd4484 |
0.503 |
|
| 2019 |
Fujiwara R, Damodaren N, Wilusz JE, Murakami K. The capping enzyme facilitates promoter escape and assembly of a follow-on preinitiation complex for reinitiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31591205 DOI: 10.1073/pnas.1905449116 |
0.531 |
|
| 2019 |
Fujiwara R, Murakami K. In vitro reconstitution of yeast RNA polymerase II transcription initiation with high efficiency. Methods (San Diego, Calif.). 159: 82-89. PMID 30905750 DOI: 10.1016/j.ymeth.2019.03.016 |
0.565 |
|
| 2017 |
Damodaren N, Van Eeuwen T, Zamel J, Lin-Shiao E, Kalisman N, Murakami K. Def1 interacts with TFIIH and modulates RNA polymerase II transcription. Proceedings of the National Academy of Sciences of the United States of America. 114: 13230-13235. PMID 29180430 DOI: 10.1073/pnas.1707955114 |
0.466 |
|
| 2017 |
Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias FJ. Mediator structure and rearrangements required for holoenzyme formation. Nature. PMID 28241144 DOI: 10.1038/Nature21393 |
0.651 |
|
| 2015 |
Murakami K, Tsai KL, Kalisman N, Bushnell DA, Asturias FJ, Kornberg RD. Structure of an RNA polymerase II preinitiation complex. Proceedings of the National Academy of Sciences of the United States of America. 112: 13543-8. PMID 26483468 DOI: 10.1073/pnas.1518255112 |
0.639 |
|
| 2015 |
Fazal FM, Meng CA, Murakami K, Kornberg RD, Block SM. Real-time observation of the initiation of RNA polymerase II transcription. Nature. 525: 274-7. PMID 26331540 DOI: 10.1038/Nature14882 |
0.665 |
|
| 2015 |
Murakami K, Mattei PJ, Davis RE, Jin H, Kaplan CD, Kornberg RD. Uncoupling Promoter Opening from Start-Site Scanning. Molecular Cell. 59: 133-8. PMID 26073544 DOI: 10.1016/J.Molcel.2015.05.021 |
0.634 |
|
| 2014 |
Schweikhard V, Meng C, Murakami K, Kaplan CD, Kornberg RD, Block SM. Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 111: 6642-7. PMID 24733897 DOI: 10.1073/Pnas.1405181111 |
0.599 |
|
| 2014 |
Pai DA, Kaplan CD, Kweon HK, Murakami K, Andrews PC, Engelke DR. RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template. Rna (New York, N.Y.). 20: 644-55. PMID 24614752 DOI: 10.1261/Rna.040444.113 |
0.417 |
|
| 2013 |
Murakami K, Elmlund H, Kalisman N, Bushnell DA, Adams CM, Azubel M, Elmlund D, Levi-Kalisman Y, Liu X, Gibbons BJ, Levitt M, Kornberg RD. Architecture of an RNA polymerase II transcription pre-initiation complex. Science (New York, N.Y.). 342: 1238724. PMID 24072820 DOI: 10.1126/Science.1238724 |
0.665 |
|
| 2013 |
Murakami K, Calero G, Brown CR, Liu X, Davis RE, Boeger H, Kornberg RD. Formation and fate of a complete 31-protein RNA polymerase II transcription preinitiation complex. The Journal of Biological Chemistry. 288: 6325-32. PMID 23303183 DOI: 10.1074/Jbc.M112.433623 |
0.668 |
|
| 2012 |
Murakami K, Gibbons BJ, Davis RE, Nagai S, Liu X, Robinson PJ, Wu T, Kaplan CD, Kornberg RD. Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 4816-21. PMID 22411836 DOI: 10.1073/Pnas.1201448109 |
0.628 |
|
| 2012 |
Gibbons BJ, Brignole EJ, Azubel M, Murakami K, Voss NR, Bushnell DA, Asturias FJ, Kornberg RD. Subunit architecture of general transcription factor TFIIH. Proceedings of the National Academy of Sciences of the United States of America. 109: 1949-54. PMID 22308316 DOI: 10.1073/Pnas.1105266109 |
0.627 |
|
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