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Atanu Das - Publications

Affiliations: 
NCL 
Area:
Protein misfolding and aggregation, Modified nucleic acid analogs, Molecular Dynamics Simulations
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Song K, Park R, Das A, Makarov DE, Vouga E. Non-Markov models of single-molecule dynamics from information-theoretical analysis of trajectories. The Journal of Chemical Physics. 159. PMID 37551804 DOI: 10.1063/5.0158930  0.551
2023 Pillai M, Das A, Jha SK. Electrostatic Modulation of Intramolecular and Intermolecular Interactions during the Formation of an Amyloid-like Assembly. Biochemistry. 62: 1890-1905. PMID 37246507 DOI: 10.1021/acs.biochem.3c00014  0.368
2022 Tammara V, Das A. Governing dynamics and preferential binding of the AXH domain influence the aggregation pathway of Ataxin-1. Proteins. PMID 36208132 DOI: 10.1002/prot.26436  0.308
2020 Satija R, Das A, Mühle S, Enderlein J, Makarov DE. Kinetics of Loop Closure in Disordered Proteins: Theory vs Simulations vs Experiments. The Journal of Physical Chemistry. B. PMID 32264681 DOI: 10.1021/Acs.Jpcb.0C01437  0.571
2019 Mandal M, Das A, Mukhopadhyay C. Ubiquitin folds via a flip-twist-lock mechanism. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140299. PMID 31676452 DOI: 10.1016/j.bbapap.2019.140299  0.603
2018 Das A, Makarov DE. Dynamics of Disordered Proteins Under Confinement: Memory Effects and Internal Friction. The Journal of Physical Chemistry. B. PMID 30092636 DOI: 10.1021/Acs.Jpcb.8B06112  0.627
2017 Satija R, Das A, Makarov DE. Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding. The Journal of Chemical Physics. 147: 152707. PMID 29055292 DOI: 10.1063/1.4993228  0.588
2017 Avdoshenko SM, Das A, Satija R, Papoian GA, Makarov DE. Theoretical and computational validation of the Kuhn barrier friction mechanism in unfolded proteins. Scientific Reports. 7: 269. PMID 28325911 DOI: 10.1038/S41598-017-00287-5  0.599
2016 Das A, Makarov DE. Effect of Mutation on an Aggregation-Prone Segment of p53: From Monomer to Dimer to Multimer. The Journal of Physical Chemistry. B. PMID 27775362 DOI: 10.1021/Acs.Jpcb.6B07457  0.536
2013 Das A, Plotkin SS. SOD1 exhibits allosteric frustration to facilitate metal binding affinity. Proceedings of the National Academy of Sciences of the United States of America. 110: 3871-6. PMID 23431152 DOI: 10.1073/pnas.1216597110  0.652
2013 Das A, Plotkin SS. Mechanical probes of SOD1 predict systematic trends in metal and dimer affinity of ALS-associated mutants. Journal of Molecular Biology. 425: 850-74. PMID 23291526 DOI: 10.1016/j.jmb.2012.12.022  0.646
2011 Das A, Mukhopadhyay C. LpxA: a natural nanotube. Biopolymers. 93: 845-53. PMID 20564049 DOI: 10.1002/bip.21475  0.65
2009 Das A, Mukhopadhyay C. Urea-mediated protein denaturation: a consensus view. The Journal of Physical Chemistry. B. 113: 12816-24. PMID 19708649 DOI: 10.1021/jp906350s  0.663
2009 Das A, Mukhopadhyay C. Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: an investigation by steered molecular dynamics simulation. Proteins. 75: 1024-34. PMID 19089957 DOI: 10.1002/prot.22314  0.679
2008 Das A, Mukhopadhyay C. Atomistic mechanism of protein denaturation by urea. The Journal of Physical Chemistry. B. 112: 7903-8. PMID 18543983 DOI: 10.1021/jp800370e  0.659
2008 Das A, Mukhopadhyay C. Application of principal component analysis in protein unfolding: an all-atom molecular dynamics simulation study. The Journal of Chemical Physics. 127: 165103. PMID 17979396 DOI: 10.1063/1.2796165  0.66
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