Xiaojing Yang - Publications

Chemistry University of Illinois at Chicago, Chicago, IL, United States 
photoreceptors, light-sensitive proteins

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Slavov C, Fischer T, Barnoy A, Shin H, Rao AG, Wiebeler C, Zeng X, Sun Y, Xu Q, Gutt A, Zhao KH, Gärtner W, Yang X, Schapiro I, Wachtveitl J. The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32591422 DOI: 10.1073/pnas.1921706117  0.52
2019 Shin H, Ren Z, Zeng X, Bandara S, Yang X. Structural basis of molecular logic OR in a dual-sensor histidine kinase. Proceedings of the National Academy of Sciences of the United States of America. PMID 31527275 DOI: 10.1073/pnas.1910855116  0.52
2019 Wang C, Ralko A, Ren Z, Rosenhouse-Dantsker A, Yang X. Modes of Cholesterol Binding in Membrane Proteins: A Joint Analysis of 73 Crystal Structures. Advances in Experimental Medicine and Biology. 1135: 67-86. PMID 31098811 DOI: 10.1007/978-3-030-14265-0_4  0.56
2018 Ren Z, Ayhan M, Bandara S, Bowatte K, Kumarapperuma I, Gunawardana S, Shin H, Wang C, Zeng X, Yang X. Crystal-on-crystal chips for in situ serial diffraction at room temperature. Lab On a Chip. PMID 29952383 DOI: 10.1039/c8lc00489g  0.56
2018 Yang X, Wu W, Perry L, Ma Z, Bar-Yosef O, Cohen DJ, Zheng H, Ge Q. Critical role of climate change in plant selection and millet domestication in North China. Scientific Reports. 8: 7855. PMID 29777204 DOI: 10.1038/s41598-018-26218-6  0.56
2018 Hu Y, Cui X, Zhang Z, Chen L, Zhang Y, Wang C, Yang X, Qu Y, Xiong Y. Optimisation of Ethanol-Reflux Extraction of Saponins from Steamed Panax notoginseng by Response Surface Methodology and Evaluation of Hematopoiesis Effect. Molecules (Basel, Switzerland). 23. PMID 29772847 DOI: 10.3390/molecules23051206  0.56
2018 Wang L, Bi Y, Yu M, Li T, Tong D, Yang X, Zhang C, Guo L, Wang C, Kou Y, Dong Z, Novakovic VA, Tian Y, Kou J, Shammas MA, et al. Phosphatidylserine-exposing blood cells and microparticles induce procoagulant activity in non-valvular atrial fibrillation. International Journal of Cardiology. 258: 138-143. PMID 29544920 DOI: 10.1016/j.ijcard.2018.01.116  0.56
2017 Wang C, Zhu J, Zhang D, Yang Y, Zheng L, Qu Y, Yang X, Cui X. Ionic Liquid - Microemulsions Assisting in the Transdermal Delivery of Dencichine: Preparation, In-vitro and In-vivo Evaluations, and Investigation of the Permeation Mechanism. International Journal of Pharmaceutics. PMID 29104058 DOI: 10.1016/j.ijpharm.2017.10.024  0.56
2017 Zuo X, Lu H, Jiang L, Zhang J, Yang X, Huan X, He K, Wang C, Wu N. Dating rice remains through phytolith carbon-14 study reveals domestication at the beginning of the Holocene. Proceedings of the National Academy of Sciences of the United States of America. PMID 28559349 DOI: 10.1073/pnas.1704304114  0.56
2017 Bandara S, Ren Z, Lu L, Zeng X, Shin H, Zhao KH, Yang X. Photoactivation mechanism of a carotenoid-based photoreceptor. Proceedings of the National Academy of Sciences of the United States of America. PMID 28559328 DOI: 10.1073/pnas.1700956114  0.52
2017 Zhang H, Shi Y, Wang C, Zhao K, Zhang S, Wei L, Dong L, Gu W, Xu Y, Ruan H, Zhi H, Yang X. An improvement of LLNA:DA to assess the skin sensitization potential of chemicals. The Journal of Toxicological Sciences. 42: 129-136. PMID 28321039 DOI: 10.2131/jts.42.129  0.56
2017 Yang X, Qi M, Zhang Z, Gao C, Wang C, Lei W, Tan L, Zhao J, Fang R, Hu M. Development and evaluation of a loop-mediated isothermal amplification (LAMP) assay for the detection of Haemonchus contortus in goat fecal samples. The Journal of Parasitology. PMID 28098507 DOI: 10.1645/16-157  0.56
2016 Zhang F, Ma H, Bowatte K, Kwiatkowski D, Mittmann E, Qasem H, Krauss N, Zeng X, Ren Z, Scheerer P, Yang X, Lamparter T. Crystal Structures of Bacterial (6-4) Photolyase Mutants with Impaired DNA Repair Activity. Photochemistry and Photobiology. PMID 27992645 DOI: 10.1111/php.12699  0.52
2016 Wang C, Flanagan ML, McGillicuddy RD, Zheng H, Ginzburg AR, Yang X, Moffat K, Engel GS. Bacteriophytochrome Photoisomerization Proceeds Homogeneously Despite Heterogeneity in Ground State. Biophysical Journal. 111: 2125-2134. PMID 27851937 DOI: 10.1016/j.bpj.2016.10.017  0.96
2016 Ren Z, Ren PX, Balusu R, Yang X. Transmembrane Helices Tilt, Bend, Slide, Torque, and Unwind between Functional States of Rhodopsin. Scientific Reports. 6: 34129. PMID 27658480 DOI: 10.1038/srep34129  0.48
2016 Ren Z, Yang X. Angular-split/temporal-delay approach to ultrafast protein dynamics at XFELs. Acta Crystallographica. Section D, Structural Biology. 72: 871-882. PMID 27377384 DOI: 10.1107/S2059798316008573  0.48
2016 Ji Q, Chen PJ, Qin G, Deng X, Hao Z, Wawrzak Z, Yeo WS, Quang JW, Cho H, Luo GZ, Weng X, You Q, Luan CH, Yang X, Bae T, et al. Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus. Nature Communications. 7: 11000. PMID 26987594 DOI: 10.1038/ncomms11000  0.96
2016 Lu H, Zhang J, Yang Y, Yang X, Xu B, Yang W, Tong T, Jin S, Shen C, Rao H, Li X, Lu H, Fuller DQ, Wang L, Wang C, et al. Earliest tea as evidence for one branch of the Silk Road across the Tibetan Plateau. Scientific Reports. 6: 18955. PMID 26738699 DOI: 10.1038/srep18955  0.56
2015 Yang X, Zhang R, Chen N, Meng X, Yang P, Wang C, Zhang Y, Wei Y, Chen G, Du F. Assembly of SnSe Nanoparticles Confined in Graphene for Enhanced Sodium-Ion Storage Performance. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 26680235 DOI: 10.1002/chem.201504074  0.56
2015 Song Q, Deng Y, Yang X, Bai Y, Xu B, Liu W, Zheng W, Wang C, Zhang M, Xu Z. Manganese-Disrupted Interaction of Dopamine D1 and NMDAR in the Striatum to Injury Learning and Memory Ability of Mice. Molecular Neurobiology. PMID 26660110 DOI: 10.1007/s12035-015-9602-7  0.56
2015 Xu M, Wang S, Ren Z, Frank JA, Yang XH, Zhang Z, Ke ZJ, Shi X, Luo J. Chronic ethanol exposure enhances the aggressiveness of breast cancer: the role of p38γ. Oncotarget. PMID 26655092 DOI: 10.18632/oncotarget.6508  0.48
2015 Wu S, Yang Y, Li Y, Wang C, Xu W, Shi E, Zou M, Yang L, Yang X, Li Y, Cao A. Blown Bubble Assembly of Graphene Oxide Patches for Transparent Electrodes in Carbon-Silicon Solar Cells. Acs Applied Materials & Interfaces. PMID 26641030 DOI: 10.1021/acsami.5b08646  0.56
2015 Qian J, Wang Y, Huang C, Yang X, Zhao JL, Wang Q, Tian Z, Li M, Zeng X. Survival and Prognostic Factors of Systemic Lupus Erythematosus-Associated Pulmonary Arterial Hypertension: A PRISMA-Compliant Systematic Review and Meta-Analysis. Autoimmunity Reviews. PMID 26640159 DOI: 10.1016/j.autrev.2015.11.012  0.52
2015 Wang L, Sun S, Jin J, Fu D, Yang X, Weng X, Xu C, Li X, Xiao J, Zhang Q. Coordinated regulation of vegetative and reproductive branching in rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 26631749 DOI: 10.1073/pnas.1521949112  0.52
2015 Liu J, Jing L, Wang C, Paliwal N, Wang S, Zhang Y, Xiang J, Siddiqui AH, Meng H, Yang X. Effect of hemodynamics on outcome of subtotally occluded paraclinoid aneurysms after stent-assisted coil embolization. Journal of Neurointerventional Surgery. PMID 26610731 DOI: 10.1136/neurintsurg-2015-012050  0.56
2015 Wei L, Liu H, Zhu L, Yang Y, Zheng J, Guo K, Luo H, Zhao W, Yang X, Maimaiti A, Wang C. A New Transcatheter Aortic Valve Replacement System for Predominant Aortic Regurgitation Implantation of the J-Valve and Early Outcome. Jacc. Cardiovascular Interventions. PMID 26604056 DOI: 10.1016/j.jcin.2015.08.021  0.56
2015 Li Y, Chang H, Yang X, Zhao Y, Chen L, Wang X, Liu H, Wang C, Zhao J. Antiviral Activity of Porcine Interferon Regulatory Factor 1 against Swine Viruses in Cell Culture. Viruses. 7: 5908-18. PMID 26593937 DOI: 10.3390/v7112913  0.56
2015 Wang C, Qian J, Wang K, Yang X, Liu Q, Hao N, Wang C, Dong X, Huang X. Colorimetric aptasensing of ochratoxin A using Au@Fe3O4 nanoparticles as signal indicator and magnetic separator. Biosensors & Bioelectronics. 77: 1183-1191. PMID 26583358 DOI: 10.1016/j.bios.2015.11.004  0.56
2015 Yang XF, Fan F, Wang C, Wei GS. Where does Grapholita molesta (Busck) (Lepidoptera: Tortricidae) overwinter in adjacent peach, pear and apple orchards? Bulletin of Entomological Research. 1-6. PMID 26548961 DOI: 10.1017/S0007485315000887  0.56
2015 Ren Z, Liang S, Yang J, Han X, Shan L, Wang B, Mu T, Zhang Y, Yang X, Xiong S, Wang G. Coexpression of CXCR4 and MMP9 predicts lung metastasis and poor prognosis in resected osteosarcoma. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26546437 DOI: 10.1007/s13277-015-4352-8  0.48
2015 Yang X, Zeng X, Moffat K, Yang X. Structure of the response regulator RPA3017 involved in red-light signaling in Rhodopseudomonas palustris. Acta Crystallographica. Section F, Structural Biology Communications. 71: 1215-22. PMID 26457509 DOI: 10.1107/S2053230X15014661  0.52
2015 Chen J, Wang S, Zhang S, Yang X, Huang Z, Wang C, Wei Q, Zhang G, Xiao J, Jiang F, Chang J, Xiang X, Wang J. Arsenic pollution and its treatment in Yangzonghai lake in China: In situ remediation. Ecotoxicology and Environmental Safety. 122: 178-185. PMID 26241314 DOI: 10.1016/j.ecoenv.2015.07.032  0.56
2015 Zeng X, Ren Z, Wu Q, Fan J, Peng PP, Tang K, Zhang R, Zhao KH, Yang X. Dynamic Crystallography Reveals Early Signalling Events in Ultraviolet Photoreceptor UVR8. Nature Plants. 1. PMID 26097745 DOI: 10.1038/nplants.2014.6  0.52
2015 Yang X, Stojkovi? EA, Ozarowski WB, Kuk J, Davydova E, Moffat K. Light Signaling Mechanism of Two Tandem Bacteriophytochromes. Structure (London, England : 1993). PMID 26095026 DOI: 10.1016/j.str.2015.04.022  0.96
2015 Yang X, Montano S, Ren Z. How Does Photoreceptor UVR8 Perceive a UV-B Signal? Photochemistry and Photobiology. 91: 993-1003. PMID 25996910 DOI: 10.1111/php.12470  0.48
2015 Yang X, Montano S, Ren Z. How Does Photoreceptor UVR8 Perceive a UV-B Signal Photochemistry and Photobiology. 91: 993-1003. DOI: 10.1111/php.12470  0.48
2015 Xiao L, Xiao J, Yu X, Yan P, Zheng J, Engelhard M, Bhattacharya P, Wang C, Yang XQ, Zhang JG. Effects of structural defects on the electrochemical activation of Li2MnO3 Nano Energy. 16: 143-151. DOI: 10.1016/j.nanoen.2015.06.011  0.56
2014 Peng PP, Dong LL, Sun YF, Zeng XL, Ding WL, Scheer H, Yang X, Zhao KH. The structure of allophycocyanin B from Synechocystis PCC 6803 reveals the structural basis for the extreme redshift of the terminal emitter in phycobilisomes. Acta Crystallographica. Section D, Biological Crystallography. 70: 2558-69. PMID 25286841 DOI: 10.1107/S1399004714015776  0.96
2014 Zheng G, Du L, Yang X, Zhang X, Wang L, Yang Y, Li J, Wang C. Serum microRNA panel as biomarkers for early diagnosis of colorectal adenocarcinoma. British Journal of Cancer. 111: 1985-92. PMID 25233400 DOI: 10.1038/bjc.2014.489  0.56
2014 Zhou W, Ding WL, Zeng XL, Dong LL, Zhao B, Zhou M, Scheer H, Zhao KH, Yang X. Structure and mechanism of the phycobiliprotein lyase CpcT. The Journal of Biological Chemistry. 289: 26677-89. PMID 25074932 DOI: 10.1074/jbc.M114.586743  0.96
2014 Li M, Chang S, Yang L, Shi J, McFarland K, Yang X, Moller A, Wang C, Zou X, Chi C, Cui J. Conopeptide Vt3.1 preferentially inhibits BK potassium channels containing β4 subunits via electrostatic interactions. The Journal of Biological Chemistry. 289: 4735-42. PMID 24398688 DOI: 10.1074/jbc.M113.535898  0.56
2014 Shao S, Huang X, Wang Y, He S, Xu X, Zhu X, Yang X, Ding Z, Yao L, Huang Y, Wang C. A role for activator of G-protein signaling 3 (AGS3) in multiple myeloma. International Journal of Hematology. 99: 57-68. PMID 24307516 DOI: 10.1007/s12185-013-1484-8  0.56
2013 Ren Z, Chan PW, Moffat K, Pai EF, Royer WE, Šrajer V, Yang X. Resolution of structural heterogeneity in dynamic crystallography. Acta Crystallographica. Section D, Biological Crystallography. 69: 946-59. PMID 23695239 DOI: 10.1107/S0907444913003454  0.96
2012 Mitra D, Yang X, Moffat K. Crystal structures of Aureochrome1 LOV suggest new design strategies for optogenetics. Structure (London, England : 1993). 20: 698-706. PMID 22483116 DOI: 10.1016/j.str.2012.02.016  0.96
2011 Yang X, Ren Z, Kuk J, Moffat K. Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome. Nature. 479: 428-32. PMID 22002602 DOI: 10.1038/nature10506  0.96
2011 Haddadian EJ, Gong H, Jha AK, Yang X, Debartolo J, Hinshaw JR, Rice PA, Sosnick TR, Freed KF. Automated real-space refinement of protein structures using a realistic backbone move set. Biophysical Journal. 101: 899-909. PMID 21843481 DOI: 10.1016/j.bpj.2011.06.063  0.96
2011 Lu N, Wang C, Yang X, Zhao S, Li X, Li X, Jiang H, Feng J, Zhang Y, Zou X. Dynamic expression of Qa-2 during acute graft rejection. Molecular Medicine (Cambridge, Mass.). 17: 248-55. PMID 21079885 DOI: 10.2119/molmed.2010.00133  0.56
2010 Möglich A, Yang X, Ayers RA, Moffat K. Structure and function of plant photoreceptors. Annual Review of Plant Biology. 61: 21-47. PMID 20192744 DOI: 10.1146/annurev-arplant-042809-112259  0.96
2009 Yang X, Kuk J, Moffat K. Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome. Proceedings of the National Academy of Sciences of the United States of America. 106: 15639-44. PMID 19720999 DOI: 10.1073/pnas.0902178106  0.96
2008 Yang X, Kuk J, Moffat K. Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction. Proceedings of the National Academy of Sciences of the United States of America. 105: 14715-20. PMID 18799746 DOI: 10.1073/pnas.0806718105  0.96
2007 Yang X, Stojkovic EA, Kuk J, Moffat K. Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion. Proceedings of the National Academy of Sciences of the United States of America. 104: 12571-6. PMID 17640891 DOI: 10.1073/pnas.0701737104  0.96
2006 Rajan SS, Yang X, Shuvalova L, Collart F, Anderson WF. Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis Proteins: Structure, Function and Genetics. 65: 255-257. PMID 16862575 DOI: 10.1002/prot.21073  0.96
2005 Wu YL, Yang X, Ren Z, McDonnell DP, Norris JD, Willson TM, Greene GL. Structural basis for an unexpected mode of SERM-Mediated ER antagonism Molecular Cell. 18: 413-424. PMID 15893725 DOI: 10.1016/j.molcel.2005.04.014  0.96
2005 Varrot A, Yip VL, Li Y, Rajan SS, Yang X, Anderson WF, Thompson J, Withers SG, Davies GJ. NAD+ and metal-ion dependent hydrolysis by family 4 glycosidases: structural insight into specificity for phospho-beta-D-glucosides. Journal of Molecular Biology. 346: 423-35. PMID 15670594 DOI: 10.1016/j.jmb.2004.11.058  0.96
2004 Rajan SS, Yang X, Shuvalova L, Collart F, Anderson WF. YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology Biochemistry. 43: 15472-15479. PMID 15581359 DOI: 10.1021/bi048665r  0.96
2004 Rajan SS, Yang X, Collart F, Yip VL, Withers SG, Varrot A, Thompson J, Davies GJ, Anderson WF. Novel catalytic mechanism of glycoside hydrolysis based on the structure of an NAD+/Mn2+ -dependent phospho-alpha-glucosidase from Bacillus subtilis. Structure (London, England : 1993). 12: 1619-29. PMID 15341727 DOI: 10.1016/j.str.2004.06.020  0.96
2004 Yip VL, Varrot A, Davies GJ, Rajan SS, Yang X, Thompson J, Anderson WF, Withers SG. An unusual mechanism of glycoside hydrolysis involving redox and elimination steps by a family 4 beta-glycosidase from Thermotoga maritima. Journal of the American Chemical Society. 126: 8354-5. PMID 15237973 DOI: 10.1021/ja047632w  0.96
2003 Krasilnikov AS, Yang X, Pan T, Mondragón A. Crystal structure of the specificity domain of ribonuclease P. Nature. 421: 760-4. PMID 12610630 DOI: 10.1038/nature01386  0.96
1998 Yang X, Ren Z, Moffat K. Structure refinement against synchrotron Laue data: strategies for data collection and reduction. Acta Crystallographica. Section D, Biological Crystallography. 54: 367-77. PMID 9761904 DOI: 10.1107/S0907444997011517  0.96
1996 Yang X, Moffat K. Insights into specificity of cleavage and mechanism of cell entry from the crystal structure of the highly specific Aspergillus ribotoxin, restrictocin. Structure (London, England : 1993). 4: 837-52. PMID 8805570 DOI: 10.1016/S0969-2126(96)00090-1  0.96
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