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Wookyung Yu - Publications

Affiliations: 
1999-2012 Pusan National University 
 2012-2016 Department of Biochemistry and Molecular Biology University of Chicago, Chicago, IL 
 2016- Department of Brain Science Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu Metropolitan City, Republic of Korea 
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15/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Seo MJ, Yu W. Uncovering conserved networks and global conformational changes in G protein-coupled receptor kinases. Computational and Structural Biotechnology Journal. 23: 3445-3453. PMID 39403406 DOI: 10.1016/j.csbj.2024.09.014  0.389
2024 Kim K, Ashim J, Ham D, Yu W, Chung KY. Roles of the gate loop in β-arrestin-1 conformational dynamics and phosphorylated receptor interaction. Structure (London, England : 1993). PMID 38889722 DOI: 10.1016/j.str.2024.05.014  0.376
2021 Ji S, Yang W, Yu W. Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation. Scientific Reports. 11: 22369. PMID 34785728 DOI: 10.1038/s41598-021-01767-5  0.316
2021 Yang W, Kim BS, Muniyappan S, Lee YH, Kim JH, Yu W. Aggregation-Prone Structural Ensembles of Transthyretin Collected With Regression Analysis for NMR Chemical Shift. Frontiers in Molecular Biosciences. 8: 766830. PMID 34746240 DOI: 10.3389/fmolb.2021.766830  0.356
2021 Seo MJ, Heo J, Kim K, Chung KY, Yu W. Coevolution underlies GPCR-G protein selectivity and functionality. Scientific Reports. 11: 7858. PMID 33846507 DOI: 10.1038/s41598-021-87251-6  0.386
2021 Ham D, Ahn D, Ashim J, Cho Y, Kim HR, Yu W, Chung KY. Conformational switch that induces GDP release from Gi. Journal of Structural Biology. 107694. PMID 33418033 DOI: 10.1016/j.jsb.2020.107694  0.38
2019 Lee J, Chang I, Yu W. Atomic insights into the effects of pathological mutants through the disruption of hydrophobic core in the prion protein. Scientific Reports. 9: 19144. PMID 31844149 DOI: 10.1038/s41598-019-55661-2  0.466
2019 Cheung NJ, Yu W. Sibe: a computation tool to apply protein sequence statistics to predict folding and design in silico. Bmc Bioinformatics. 20: 455. PMID 31492097 DOI: 10.1186/s12859-019-2984-1  0.429
2018 Cheung NJ, Yu W. De novo protein structure prediction using ultra-fast molecular dynamics simulation. Plos One. 13: e0205819. PMID 30458007 DOI: 10.1371/journal.pone.0205819  0.447
2017 Gates ZP, Baxa MC, Yu W, Riback JA, Li H, Roux B, Kent SB, Sosnick TR. Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193869 DOI: 10.1073/Pnas.1609579114  0.634
2016 Yu W, Baxa MC, Gagnon I, Freed KF, Sosnick TR. Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange. Proceedings of the National Academy of Sciences of the United States of America. PMID 27078098 DOI: 10.1073/Pnas.1522500113  0.732
2015 Baxa MC, Yu W, Adhikari AN, Ge L, Xia Z, Zhou R, Freed KF, Sosnick TR. Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100906 DOI: 10.1073/Pnas.1503613112  0.595
2014 Skinner JJ, Yu W, Gichana EK, Baxa MC, Hinshaw JR, Freed KF, Sosnick TR. Benchmarking all-atom simulations using hydrogen exchange. Proceedings of the National Academy of Sciences of the United States of America. 111: 15975-80. PMID 25349413 DOI: 10.1073/Pnas.1404213111  0.711
2011 Yu W, Lee W, Lee W, Kim S, Chang I. Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids. Journal of Biomolecular Nmr. 51: 411-24. PMID 22038647 DOI: 10.1007/S10858-011-9579-0  0.375
2008 Yu W, Chung K, Cheon M, Heo M, Han KH, Ham S, Chang I. Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues Proceedings of the National Academy of Sciences of the United States of America. 105: 2397-2402. PMID 18272497 DOI: 10.1073/pnas.0708480105  0.535
Low-probability matches (unlikely to be authored by this person)
2021 Keum M, Ito D, Kim MS, Lin Y, Yoon KH, Kim J, Lee SH, Kim JH, Yu W, Lee YH, Won HS. Molecular Effects of Elongation Factor Ts and Trigger Factor on the Unfolding and Aggregation of Elongation Factor Tu Induced by the Prokaryotic Molecular Chaperone Hsp33. Biology. 10. PMID 34827164 DOI: 10.3390/biology10111171  0.286
2024 An YJ, Jung YE, Lee KW, Kaushal P, Ko IY, Shin SM, Ji S, Yu W, Lee C, Lee WK, Cha K, Lee JH, Cha SS, Yim HS. Structural and biochemical investigation into stable FGF2 mutants with novel mutation sites and hydrophobic replacements for surface-exposed cysteines. Plos One. 19: e0307499. PMID 39236042 DOI: 10.1371/journal.pone.0307499  0.282
2011 Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W, Cho HS, Chang I, Lee K, Ha NC. Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC. The Journal of Biological Chemistry. 286: 13541-9. PMID 21325274 DOI: 10.1074/jbc.M110.202598  0.274
2022 Park S, Shin YK, Yoon JY, Nam KH, Munashingha PR, Park S, Park SY, Kim S, Lee J, Seo MJ, Yu W, Seo YS, Chang I. Computational design of a thermolabile uracil-DNA glycosylase of Escherichia coli. Biophysical Journal. PMID 35183522 DOI: 10.1016/j.bpj.2022.02.027  0.256
2012 Lee W, Yu W, Kim S, Chang I, Lee W, Markley JL. PACSY, a relational database management system for protein structure and chemical shift analysis. Journal of Biomolecular Nmr. 54: 169-79. PMID 22903636 DOI: 10.1007/S10858-012-9660-3  0.253
2025 Park W, Son SY, Yi J, Cha S, Moon H, Kim M, Ji S, Yu W, Sung C, Cha SS, Hahn JS. Unlocking the serine mischarging paradox and inhibiting lactyltransferase activity of AlaRS by a single-point mutation. Nucleic Acids Research. 53. PMID 40479712 DOI: 10.1093/nar/gkaf462  0.213
2022 Lee K, Kim T, Cheon M, Yu W. Unveiling OASIS family as a key player in hypoxia-ischemia cases induced by cocaine using generative adversarial networks. Scientific Reports. 12: 6734. PMID 35469040 DOI: 10.1038/s41598-022-10772-1  0.163
2021 Jung J, Baek J, Tae K, Shin D, Han S, Yang W, Yu W, Jung SM, Park SH, Choi CY, Lee S. Structural mechanism for regulation of Rab7 by site-specific monoubiquitination. International Journal of Biological Macromolecules. PMID 34801583 DOI: 10.1016/j.ijbiomac.2021.11.074  0.162
2018 Jung SW, Cho AE, Yu W. Exploring the Ligand Efficacy of Cannabinoid Receptor 1 (CB1) using Molecular Dynamics Simulations. Scientific Reports. 8: 13787. PMID 30213978 DOI: 10.1038/s41598-018-31749-z  0.135
2022 Lin Y, Ito D, Yoo JM, Lim MH, Yu W, Kawata Y, Lee YH. Dual Effects of Presynaptic Membrane Mimetics on -Synuclein Amyloid Aggregation. Frontiers in Cell and Developmental Biology. 10: 707417. PMID 35747692 DOI: 10.3389/fcell.2022.707417  0.127
2025 Ashim J, Seo MJ, Ji S, Heo J, Yu W. Research approaches for exploring the hidden conversations of G protein-coupled receptor transactivation. Molecular Pharmacology. 107: 100043. PMID 40449085 DOI: 10.1016/j.molpha.2025.100043  0.12
2025 Kim BS, Yu W. Identification of potential Abl kinase inhibitors using virtual screening and free energy calculations for the treatment of chronic myeloid leukemia. Biophysical Chemistry. 324: 107470. PMID 40412273 DOI: 10.1016/j.bpc.2025.107470  0.119
2022 Park CG, Yu W, Suh BC. Molecular basis of the PIP2-dependent regulation of CaV2.2 channel and its modulation by CaV β subunits. Elife. 11. PMID 36374183 DOI: 10.7554/eLife.69500  0.106
2023 Kim HY, Ashim J, Park S, Kim W, Ji S, Lee SW, Jung YR, Jeong SW, Lee SG, Kim HC, Lee YJ, Kwon MK, Hwang JS, Shin JM, Lee SJ, ... Yu W, et al. A preliminary study about the potential risks of the UV-weathered microplastic: The proteome-level changes in the brain in response to polystyrene derived weathered microplastics. Environmental Research. 116411. PMID 37354929 DOI: 10.1016/j.envres.2023.116411  0.094
2021 Kwon W, Choi SK, Kim D, Kim HG, Park JK, Han JE, Cho GJ, Yun S, Yu W, Han SH, Ha YS, Lee JN, Kwon TG, Cho DH, Yi JK, et al. ZNF507 affects TGF-β signaling via TGFBR1 and MAP3K8 activation in the progression of prostate cancer to an aggressive state. Journal of Experimental & Clinical Cancer Research : Cr. 40: 291. PMID 34537073 DOI: 10.1186/s13046-021-02094-3  0.085
2022 Kim W, Yeo DY, Choi SK, Kim HY, Lee SW, Ashim J, Han JE, Yu W, Jeong H, Park JK, Park S. NOLC1 knockdown suppresses prostate cancer progressions by reducing AKT phosphorylation and β-catenin accumulation. Biochemical and Biophysical Research Communications. 635: 99-107. PMID 36265288 DOI: 10.1016/j.bbrc.2022.10.038  0.07
2023 Kim HY, Lee SW, Choi SK, Ashim J, Kim W, Beak SM, Park JK, Han JE, Cho GJ, Ryoo ZY, Jeong J, Lee YH, Jeong H, Yu W, Park S. Veratramine Inhibits the Cell Cycle Progression, Migration, and Invasion via ATM/ATR Pathway in Androgen-Independent Prostate Cancer. The American Journal of Chinese Medicine. 1-25. PMID 37385965 DOI: 10.1142/S0192415X2350060X  0.065
2025 Kim S, Kim H, Pelayo J, Alvarez S, Jang G, Kim J, Hoelscher V, Calleja-Pérez B, Jung H, Lee J, Kim S, de la Peña MJ, Han AR, Lee DS, Ji S, ... Yu W, et al. Autism-associated MDGA1 missense mutations impair distinct facets of central nervous system development. Medrxiv : the Preprint Server For Health Sciences. PMID 40585099 DOI: 10.1101/2025.06.07.25328825  0.064
2024 Kim T, Lee K, Cheon M, Yu W. GAN-WGCNA: Calculating gene modules to identify key intermediate regulators in cocaine addiction. Plos One. 19: e0311164. PMID 39361596 DOI: 10.1371/journal.pone.0311164  0.055
2021 Choi M, Park S, Yi JK, Kwon W, Jang S, Kim SY, Yu W, Kim MO, Ryoo ZY, Choi SK. Overexpression of hepatic serum amyloid A1 in mice increases IL-17-producing innate immune cells and decreases bone density. The Journal of Biological Chemistry. 100595. PMID 33781747 DOI: 10.1016/j.jbc.2021.100595  0.042
2025 Kim T, Lee K, Cheon M, Yu W. Correction: GAN-WGCNA: Calculating gene modules to identify key intermediate regulators in cocaine addiction. Plos One. 20: e0320886. PMID 40117225 DOI: 10.1371/journal.pone.0320886  0.016
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