| Year |
Citation |
Score |
| 2023 |
Schiavinato M, Del Olmo V, Muya VN, Gabaldón T. JLOH: Inferring loss of heterozygosity blocks from sequencing data. Computational and Structural Biotechnology Journal. 21: 5738-5750. PMID 38074465 DOI: 10.1016/j.csbj.2023.11.003 |
0.321 |
|
| 2023 |
Mixão V, Nunez-Rodriguez JC, Del Olmo V, Ksiezopolska E, Saus E, Boekhout T, Gacser A, Gabaldón T. Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens. Bmc Biology. 21: 105. PMID 37170256 DOI: 10.1186/s12915-023-01608-z |
0.347 |
|
| 2023 |
Julca I, Vargas P, Gabaldón T. Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies. Bmc Biology. 21: 85. PMID 37069619 DOI: 10.1186/s12915-023-01583-5 |
0.305 |
|
| 2023 |
Marlétaz F, de la Calle-Mustienes E, Acemel RD, Paliou C, Naranjo S, Martínez-García PM, Cases I, Sleight VA, Hirschberger C, Marcet-Houben M, Navon D, Andrescavage A, Skvortsova K, Duckett PE, González-Rajal Á, et al. The little skate genome and the evolutionary emergence of wing-like fins. Nature. PMID 37046085 DOI: 10.1038/s41586-023-05868-1 |
0.405 |
|
| 2023 |
Marcet-Houben M, Collado-Cala I, Fuentes-Palacios D, Gómez AD, Molina M, Garisoain-Zafra A, Chorostecki U, Gabaldón T. EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods. Journal of Molecular Biology. 168013. PMID 36806474 DOI: 10.1016/j.jmb.2023.168013 |
0.342 |
|
| 2022 |
Gabaldón T, Hittinger CT. Editorial: Genomic insights on fungal hybrids. Frontiers in Fungal Biology. 3: 1063609. PMID 37746239 DOI: 10.3389/ffunb.2022.1063609 |
0.329 |
|
| 2022 |
Marcet-Houben M, Alvarado M, Ksiezopolska E, Saus E, de Groot PWJ, Gabaldón T. Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata. Bmc Biology. 20: 226. PMID 36209154 DOI: 10.1186/s12915-022-01412-1 |
0.339 |
|
| 2022 |
Naranjo-Ortiz MA, Molina M, Fuentes D, Mixão V, Gabaldón T. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies. Gigascience. 11. PMID 36205401 DOI: 10.1093/gigascience/giac088 |
0.326 |
|
| 2022 |
Foley S, Vlasova A, Marcet-Houben M, Gabaldón T, Hinman VF. Evolutionary analyses of genes in Echinodermata offer insights towards the origin of metazoan phyla. Genomics. 114: 110431. PMID 35835427 DOI: 10.1016/j.ygeno.2022.110431 |
0.326 |
|
| 2022 |
Schikora-Tamarit MÀ, Gabaldón T. Using genomics to understand the mechanisms of virulence and drug resistance in fungal pathogens. Biochemical Society Transactions. 50: 1259-1268. PMID 35713390 DOI: 10.1042/BST20211123 |
0.323 |
|
| 2022 |
Liedtke HC, Cruz F, Gómez-Garrido J, Fuentes Palacios D, Marcet-Houben M, Gut M, Alioto T, Gabaldón T, Gomez-Mestre I. Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the western spadefoot toad. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 29. PMID 35583263 DOI: 10.1093/dnares/dsac013 |
0.408 |
|
| 2022 |
Mixão V, Del Olmo V, Hegedűsová E, Saus E, Pryszcz L, Cillingová A, Nosek J, Gabaldón T. Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 29. PMID 35438177 DOI: 10.1093/dnares/dsac010 |
0.307 |
|
| 2022 |
Theelen B, Mixão V, Ianiri G, Goh JPZ, Dijksterhuis J, Heitman J, Dawson TL, Gabaldón T, Boekhout T. Multiple Hybridization Events Punctuate the Evolutionary Trajectory of . Mbio. 13: e0385321. PMID 35404119 DOI: 10.1128/mbio.03853-21 |
0.325 |
|
| 2021 |
Hovhannisyan H, Gabaldón T. The long non-coding RNA landscape of Candida yeast pathogens. Nature Communications. 12: 7317. PMID 34916523 DOI: 10.1038/s41467-021-27635-4 |
0.317 |
|
| 2021 |
Boekhout T, Aime MC, Begerow D, Gabaldón T, Heitman J, Kemler M, Khayhan K, Lachance MA, Louis EJ, Sun S, Vu D, Yurkov A. The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks. Fungal Diversity. 109: 27-55. PMID 34720775 DOI: 10.1007/s13225-021-00475-9 |
0.36 |
|
| 2021 |
Fuentes D, Molina M, Chorostecki U, Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T. PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. Nucleic Acids Research. PMID 34718760 DOI: 10.1093/nar/gkab966 |
0.354 |
|
| 2021 |
Gabaldón T. Origin and Early Evolution of the Eukaryotic Cell. Annual Review of Microbiology. PMID 34343017 DOI: 10.1146/annurev-micro-090817-062213 |
0.319 |
|
| 2021 |
Marcet-Houben M, Villarino M, Vilanova L, De Cal A, van Kan JAL, Usall J, Gabaldón T, Torres R. Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes among Species. Journal of Fungi (Basel, Switzerland). 7. PMID 34201288 DOI: 10.3390/jof7060464 |
0.4 |
|
| 2021 |
Mixão V, Hegedűsová E, Saus E, Pryszcz LP, Cillingová A, Nosek J, Gabaldón T. Genome analysis of Candida subhashii reveals its hybrid nature and dual mitochondrial genome conformations. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 34129020 DOI: 10.1093/dnares/dsab006 |
0.395 |
|
| 2021 |
Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I. Ten years of collaborative progress in the Quest for Orthologs. Molecular Biology and Evolution. PMID 33822172 DOI: 10.1093/molbev/msab098 |
0.345 |
|
| 2020 |
Gabaldón T. Grand Challenges in Fungal Genomics and Evolution. Frontiers in Fungal Biology. 1: 594855. PMID 37743874 DOI: 10.3389/ffunb.2020.594855 |
0.351 |
|
| 2020 |
Vosseberg J, van Hooff JJE, Marcet-Houben M, van Vlimmeren A, van Wijk LM, Gabaldón T, Snel B. Timing the origin of eukaryotic cellular complexity with ancient duplications. Nature Ecology & Evolution. PMID 33106602 DOI: 10.1038/s41559-020-01320-z |
0.611 |
|
| 2020 |
Julca I, Marcet-Houben M, Cruz F, Gómez-Garrido J, Gaut BS, Díez CM, Gut IG, Alioto TS, Vargas P, Gabaldón T. Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). Bmc Biology. 18: 148. PMID 33100219 DOI: 10.1186/s12915-020-00881-6 |
0.316 |
|
| 2020 |
Gómez-Molero E, Willis JR, Dudakova A, Carreté L, Weig M, Groß U, Gácser A, Gabaldón T, Bader O. Phenotypic Variability in a Coinfection With Three Independent Lineages. Frontiers in Microbiology. 11: 1994. PMID 32983018 DOI: 10.3389/Fmicb.2020.01994 |
0.365 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, et al. Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 123. PMID 32917281 DOI: 10.1186/s12915-020-00864-7 |
0.318 |
|
| 2020 |
Gabaldón T. Patterns and impacts of nonvertical evolution in eukaryotes: a paradigm shift. Annals of the New York Academy of Sciences. PMID 32860228 DOI: 10.1111/nyas.14471 |
0.38 |
|
| 2020 |
Pittis AA, Goh V, Cebrian-Serrano A, Wettmarshausen J, Perocchi F, Gabaldón T. Discovery of EMRE in fungi resolves the true evolutionary history of the mitochondrial calcium uniporter. Nature Communications. 11: 4031. PMID 32788582 DOI: 10.1038/S41467-020-17705-4 |
0.305 |
|
| 2020 |
Muñoz-Barrios A, Sopeña-Torres S, Ramos B, López G, Del Hierro García I, Díaz-González S, González-Melendi P, Mélida H, Fernández-Calleja V, Mixão V, Martín Dacal M, Marcet-Houben M, Gabaldón T, Sacristan S, Molina A. Differential expression of fungal genes determines the lifestyle of Plectosphaerella strains during Arabidopsis thaliana colonization. Molecular Plant-Microbe Interactions : Mpmi. PMID 32720872 DOI: 10.1094/Mpmi-03-20-0057-R |
0.382 |
|
| 2020 |
Rispe C, Legeai F, Nabity PD, Fernández R, Arora AK, Baa-Puyoulet P, Banfill CR, Bao L, Barberà M, Bouallègue M, Bretaudeau A, Brisson JA, Calevro F, Capy P, Catrice O, et al. The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. Bmc Biology. 18: 90. PMID 32698880 DOI: 10.1186/S12915-020-00820-5 |
0.43 |
|
| 2020 |
Gabaldón T. Hybridization and the origin of new yeast lineages. Fems Yeast Research. 20. PMID 32658267 DOI: 10.1093/Femsyr/Foaa040 |
0.476 |
|
| 2020 |
Hovhannisyan H, Saus E, Ksiezopolska E, Hinks Roberts AJ, Louis EJ, Gabaldón T. Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization. Frontiers in Genetics. 11: 404. PMID 32457798 DOI: 10.3389/Fgene.2020.00404 |
0.425 |
|
| 2020 |
Mixão V, Gabaldón T. Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans. Bmc Biology. 18: 48. PMID 32375762 DOI: 10.1186/S12915-020-00776-6 |
0.407 |
|
| 2020 |
Fernández R, Marcet-Houben M, Legeai F, Richard G, Robin S, Wucher V, Pegueroles C, Gabaldón T, Tagu D. Selection following gene duplication shapes recent genome evolution in the pea aphid Acyrthosiphon pisum. Molecular Biology and Evolution. PMID 32359152 DOI: 10.1093/Molbev/Msaa110 |
0.496 |
|
| 2020 |
Chorostecki U, Molina M, Pryszcz LP, Gabaldón T. MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. Nucleic Acids Research. PMID 32343307 DOI: 10.1093/Nar/Gkaa282 |
0.455 |
|
| 2020 |
Naranjo-Ortiz MA, Gabaldón T. Fungal evolution: cellular, genomic and metabolic complexity. Biological Reviews of the Cambridge Philosophical Society. PMID 32301582 DOI: 10.1111/Brv.12605 |
0.462 |
|
| 2020 |
Giordano R, Donthu RK, Zimin A, Julca Chavez IC, Gabaldon T, van Munster M, Hon L, Hall R, Badger J, Nguyen M, Flores A, Potter B, Giray T, Soto-Adames FN, Weber E, et al. Soybean Aphid Biotype 1 Genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest. Insect Biochemistry and Molecular Biology. 103334. PMID 32109587 DOI: 10.1016/J.Ibmb.2020.103334 |
0.31 |
|
| 2020 |
Fernández R, Gabaldón T. Gene gain and loss across the metazoan tree of life. Nature Ecology & Evolution. PMID 31988444 DOI: 10.1038/S41559-019-1069-X |
0.424 |
|
| 2020 |
Hovhannisyan H, Hafez A, Llorens C, Gabaldón T. CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies. Bioinformatics (Oxford, England). 36: 925-927. PMID 31392323 DOI: 10.1093/Bioinformatics/Btz626 |
0.37 |
|
| 2019 |
Pegueroles C, Mixão V, Carreté L, Molina M, Gabaldón T. HaploTypo: a variant-calling pipeline for phased genomes. Bioinformatics (Oxford, England). PMID 31834373 DOI: 10.1093/Bioinformatics/Btz933 |
0.382 |
|
| 2019 |
Schiavinato M, Marcet-Houben M, Dohm JC, Gabaldón T, Himmelbauer H. Parental origin of the allotetraploid tobacco Nicotiana benthamiana. The Plant Journal : For Cell and Molecular Biology. PMID 31833111 DOI: 10.1111/Tpj.14648 |
0.364 |
|
| 2019 |
Julca I, Marcet-Houben M, Cruz F, Vargas-Chavez C, Johnston JS, Gómez-Garrido J, Frias L, Corvelo A, Loska D, Cámara F, Gut M, Alioto T, Latorre A, Gabaldón T. Phylogenomics identifies an ancestral burst of gene duplications predating the diversification of aphidomorpha. Molecular Biology and Evolution. PMID 31702774 DOI: 10.1093/Molbev/Msz261 |
0.516 |
|
| 2019 |
Zhao G, Lian Q, Zhang Z, Fu Q, He Y, Ma S, Ruggieri V, Monforte AJ, Wang P, Julca I, Wang H, Liu J, Xu Y, Wang R, Ji J, et al. A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits. Nature Genetics. PMID 31676864 DOI: 10.1038/S41588-019-0522-8 |
0.434 |
|
| 2019 |
Naranjo-Ortiz MA, Gabaldón T. Fungal evolution: diversity, taxonomy and phylogeny of the Fungi. Biological Reviews of the Cambridge Philosophical Society. 94: 2101-2137. PMID 31659870 DOI: 10.1111/Brv.12550 |
0.396 |
|
| 2019 |
Gabaldón T, Gómez-Molero E, Bader O. Molecular Typing of Candida glabrata. Mycopathologia. PMID 31617105 DOI: 10.1007/S11046-019-00388-X |
0.366 |
|
| 2019 |
Lütkenhaus R, Traeger S, Breuer J, Carreté L, Kuo A, Lipzen A, Pangilinan J, Dilworth D, Sandor L, Pöggeler S, Gabaldón T, Barry K, Grigoriev IV, Nowrousian M. Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes. Genetics. PMID 31604798 DOI: 10.1534/Genetics.119.302749 |
0.455 |
|
| 2019 |
Mixão V, Saus E, Perez Hansen A, Lass-Florl C, Gabaldón T. Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: (syn. ) and (syn. ). G3 (Bethesda, Md.). PMID 31575637 DOI: 10.1534/G3.119.400762 |
0.448 |
|
| 2019 |
Alioto T, Alexiou KG, Bardil A, Barteri F, Castanera R, Cruz F, Dhingra A, Duval H, Fernández I Martí Á, Frias L, Galán B, Garcia JL, Howad W, Gómez-Garrido J, Gut M, et al. Transposons played a major role in the diversification between the closely related almond and peach genomes: Results from the almond genome sequence. The Plant Journal : For Cell and Molecular Biology. PMID 31529539 DOI: 10.1111/Tpj.14538 |
0.499 |
|
| 2019 |
Marcet-Houben M, Gabaldón T. Evolutionary and functional patterns of shared gene neighbourhood in fungi. Nature Microbiology. PMID 31527797 DOI: 10.1038/S41564-019-0552-0 |
0.345 |
|
| 2019 |
Glover N, Dessimoz C, Ebersberger I, Forslund SK, Gabaldón T, Huerta-Cepas J, Martin MJ, Muffato M, Patricio M, Pereira C, Sousa da Silva A, Wang Y, Sonnhammer E, Thomas PD. Advances and Applications in the Quest for Orthologs. Molecular Biology and Evolution. PMID 31241141 DOI: 10.1093/Molbev/Msz150 |
0.45 |
|
| 2019 |
Mixão V, Hansen AP, Saus E, Boekhout T, Lass-Florl C, Gabaldón T. Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Uncovers Its Hybrid Origin. Frontiers in Genetics. 10: 383. PMID 31105748 DOI: 10.3389/Fgene.2019.00383 |
0.464 |
|
| 2019 |
Naranjo-Ortiz MA, Gabaldón T. Fungal evolution: major ecological adaptations and evolutionary transitions. Biological Reviews of the Cambridge Philosophical Society. PMID 31021528 DOI: 10.1111/Brv.12510 |
0.439 |
|
| 2019 |
Tóth R, Nosek J, Mora-Montes HM, Gabaldon T, Bliss JM, Nosanchuk JD, Turner SA, Butler G, Vágvölgyi C, Gácser A. Candida parapsilosis: from Genes to the Bedside. Clinical Microbiology Reviews. 32. PMID 30814115 DOI: 10.1128/Cmr.00111-18 |
0.375 |
|
| 2019 |
Carreté L, Ksiezopolska E, Gómez-Molero E, Angoulvant A, Bader O, Fairhead C, Gabaldón T. Genome Comparisons of Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations. Frontiers in Microbiology. 10: 112. PMID 30809200 DOI: 10.3389/Fmicb.2019.00112 |
0.392 |
|
| 2019 |
Mariotti M, Salinas G, Gabaldón T, Gladyshev VN. Utilization of selenocysteine in early-branching fungal phyla. Nature Microbiology. PMID 30742068 DOI: 10.1038/S41564-018-0354-9 |
0.421 |
|
| 2019 |
Pegueroles C, Iraola-Guzmán S, Chorostecki U, Ksiezopolska E, Saus E, Gabaldón T. Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis. Rna Biology. 16: 320-329. PMID 30691342 DOI: 10.1080/15476286.2019.1572438 |
0.39 |
|
| 2019 |
González-Torres P, Rodríguez-Mateos F, Antón J, Gabaldón T. Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes. Mbio. 10. PMID 30670614 DOI: 10.1128/Mbio.02494-18 |
0.495 |
|
| 2019 |
Pérez-Sánchez J, Naya-Català F, Soriano B, Piazzon MC, Hafez A, Gabaldón T, Llorens C, Sitjà-Bobadilla A, Calduch-Giner JÀ. Genome Sequencing and Transcriptome Analysis Reveal Recent Species-Specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata) Frontiers in Marine Science. 6. DOI: 10.3389/Fmars.2019.00760 |
0.516 |
|
| 2018 |
Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, et al. Genetically encodable bioluminescent system from fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 30478037 DOI: 10.1073/Pnas.1803615115 |
0.43 |
|
| 2018 |
Wettmarshausen J, Goh V, Huang KT, Arduino DM, Tripathi U, Leimpek A, Cheng Y, Pittis AA, Gabaldón T, Mokranjac D, Hajnóczky G, Perocchi F. MICU1 Confers Protection from MCU-Dependent Manganese Toxicity. Cell Reports. 25: 1425-1435.e7. PMID 30403999 DOI: 10.1016/J.Celrep.2018.10.037 |
0.305 |
|
| 2018 |
Gabaldón T. Evolution of the Peroxisomal Proteome. Sub-Cellular Biochemistry. 89: 221-233. PMID 30378025 DOI: 10.1007/978-981-13-2233-4_9 |
0.393 |
|
| 2018 |
Gabaldón T. Relative timing of mitochondrial endosymbiosis and the "pre-mitochondrial symbioses" hypothesis. Iubmb Life. PMID 30358047 DOI: 10.1002/Iub.1950 |
0.407 |
|
| 2018 |
Ksiezopolska E, Gabaldón T. Evolutionary Emergence of Drug Resistance in Candida Opportunistic Pathogens. Genes. 9. PMID 30235884 DOI: 10.3390/Genes9090461 |
0.329 |
|
| 2018 |
Hovhannisyan H, Gabaldón T. Transcriptome Sequencing Approaches to Elucidate Host-Microbe Interactions in Opportunistic Human Fungal Pathogens. Current Topics in Microbiology and Immunology. PMID 30128828 DOI: 10.1007/82_2018_122 |
0.378 |
|
| 2018 |
González-Torres P, Gabaldón T. Genome Variation in the Model Halophilic Bacterium . Frontiers in Microbiology. 9: 1499. PMID 30072959 DOI: 10.3389/Fmicb.2018.01499 |
0.503 |
|
| 2018 |
Chakraborty T, Thuer E, Heijink M, Tóth R, Bodai L, Vágvölgyi C, Giera M, Gabaldón T, Gácser A. Eicosanoid biosynthesis influences the virulence of Candida parapsilosis. Virulence. 9: 1019-1035. PMID 30052120 DOI: 10.1080/21505594.2018.1475797 |
0.348 |
|
| 2018 |
Gabaldón T, Fairhead C. Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal. Current Genetics. PMID 30027485 DOI: 10.1007/S00294-018-0867-Z |
0.367 |
|
| 2018 |
Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, ... ... Gabaldon T, et al. Gene flow contributes to diversification of the major fungal pathogen Candida albicans. Nature Communications. 9: 2253. PMID 29884848 DOI: 10.1038/S41467-018-04787-4 |
0.412 |
|
| 2018 |
Muntané G, Farré X, Antonio Rodríguez J, Pegueroles C, Hughes DA, de Magalhães JP, Gabaldón T, Navarro A. Biological processes modulating longevity across primates: a phylogenetic genome-phenome analysis. Molecular Biology and Evolution. PMID 29788292 DOI: 10.1093/Molbev/Msy105 |
0.447 |
|
| 2018 |
Legras JL, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marina MH, Gabaldon T, Schuller D, Sampaio JP, Dequin S. Adaptation of S. cerevisiae to fermented food environments reveals remarkable genome plasticity and the footprints of domestication. Molecular Biology and Evolution. PMID 29746697 DOI: 10.1093/Molbev/Msy066 |
0.474 |
|
| 2018 |
Naranjo-Ortíz MA, Rodríguez-Píres S, Torres R, De Cal A, Usall J, Gabaldón T. Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa. Genome Announcements. 6. PMID 29700136 DOI: 10.1128/Genomea.00214-18 |
0.471 |
|
| 2018 |
Julca I, Marcet-Houben M, Vargas P, Gabaldón T. Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events. Bmc Biology. 16: 15. PMID 29370802 DOI: 10.1186/S12915-018-0482-Y |
0.468 |
|
| 2018 |
Tóth R, Cabral V, Thuer E, Bohner F, Németh T, Papp C, Nimrichter L, Molnár G, Vágvölgyi C, Gabaldón T, Nosanchuk JD, Gácser A. Investigation of Candida parapsilosis virulence regulatory factors during host-pathogen interaction. Scientific Reports. 8: 1346. PMID 29358719 DOI: 10.1038/S41598-018-19453-4 |
0.331 |
|
| 2018 |
Stavrou AA, Mixão V, Boekhout T, Gabaldón T. Misidentification of genome assemblies in public databases: the case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications. Yeast (Chichester, England). PMID 29320804 DOI: 10.1002/Yea.3303 |
0.386 |
|
| 2017 |
Carreté L, Ksiezopolska E, Pegueroles C, Gómez-Molero E, Saus E, Iraola-Guzmán S, Loska D, Bader O, Fairhead C, Gabaldón T. Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans. Current Biology : Cb. PMID 29249661 DOI: 10.1016/J.Cub.2017.11.027 |
0.431 |
|
| 2017 |
Villamor J, Ramos-Barbero MD, González-Torres P, Gabaldón T, Rosselló-Móra R, Meseguer I, Martínez-García M, Santos F, Antón J. Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes. The Isme Journal. PMID 29099492 DOI: 10.1038/Ismej.2017.175 |
0.328 |
|
| 2017 |
Forslund K, Pereira C, Capella-Gutierrez S, Sousa da Silva A, Altenhoff A, Huerta-Cepas J, Muffato M, Patricio M, Vandepoele K, Ebersberger I, Blake J, Fernández Breis JT, Boeckmann B, Gabaldón T, et al. Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinformatics (Oxford, England). PMID 28968857 DOI: 10.1093/Bioinformatics/Btx542 |
0.412 |
|
| 2017 |
Bravo-Ruiz G, Sassi AH, Marcet-Houben M, Di Pietro A, Gargouri A, Gabaldon T, Roncero MIG. Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum. Frontiers in Microbiology. 8: 1627. PMID 28951729 DOI: 10.3389/Fmicb.2017.01627 |
0.455 |
|
| 2017 |
Cillingová A, Zeman I, Tóth R, Neboháčová M, Dunčková I, Hölcová M, Jakúbková M, Gérecová G, Pryszcz LP, Tomáška Ľ, Gabaldón T, Gácser A, Nosek J. Eukaryotic transporters for hydroxyderivatives of benzoic acid. Scientific Reports. 7: 8998. PMID 28827635 DOI: 10.1038/S41598-017-09408-6 |
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Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, et al. Genome-wide signatures of complex introgression and adaptive evolution in the big cats. Science Advances. 3: e1700299. PMID 28776029 DOI: 10.1126/Sciadv.1700299 |
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Mixão V, Gabaldón T. Hybridization and emergence of virulence in opportunistic human yeast pathogens. Yeast (Chichester, England). PMID 28681409 DOI: 10.1002/Yea.3242 |
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| 2017 |
Echeverz M, García B, Sabalza A, Valle J, Gabaldón T, Solano C, Lasa I. Lack of the PGA exopolysaccharide in Salmonella as an adaptive trait for survival in the host. Plos Genetics. 13: e1006816. PMID 28542593 DOI: 10.1371/Journal.Pgen.1006816 |
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Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, et al. Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology. 18: 63. PMID 28376841 DOI: 10.1186/S13059-017-1202-6 |
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Rendón-Anaya M, Montero-Vargas JM, Saburido-Álvarez S, Vlasova A, Capella-Gutierrez S, Ordaz-Ortiz JJ, Aguilar OM, Vianello-Brondani RP, Santalla M, Delaye L, Gabaldón T, Gepts P, Winkler R, Guigó R, Delgado-Salinas A, et al. Genomic history of the origin and domestication of common bean unveils its closest sister species. Genome Biology. 18: 60. PMID 28356141 DOI: 10.1186/S13059-017-1190-6 |
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Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, et al. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology. 18: 27. PMID 28190401 DOI: 10.1186/S13059-016-1145-3 |
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Naranjo-Ortíz MA, Brock M, Brunke S, Hube B, Marcet-Houben M, Gabaldón T. Widespread Inter- and Intra-Domain Horizontal Gene Transfer of d-Amino Acid Metabolism Enzymes in Eukaryotes. Frontiers in Microbiology. 7: 2001. PMID 28066338 DOI: 10.3389/Fmicb.2016.02001 |
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| 2016 |
Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, et al. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biology. 17: 251. PMID 27964752 DOI: 10.1186/S13059-016-1090-1 |
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| 2016 |
Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, et al. Correction: Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina). Plos Genetics. 12: e1006491. PMID 27918580 DOI: 10.1371/journal.pgen.1006491 |
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| 2016 |
Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E. High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation. Developmental Cell. PMID 27746046 DOI: 10.1016/J.Devcel.2016.09.019 |
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Zeman I, Neboháčová M, Gérecová G, Katonová K, Jánošiková E, Jakúbková M, Centárová I, Dunčková I, Tomáška Ĺ, Pryszcz LP, Gabaldón T, Nosek J. Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in Candida parapsilosis. G3 (Bethesda, Md.). PMID 27707801 DOI: 10.1534/G3.116.034389 |
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Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, ... ... Gabaldon T, et al. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biology. 17: 184. PMID 27604469 DOI: 10.1186/S13059-016-1037-6 |
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Gabaldón T, Naranjo MA, Marcet-Houben M. Evolutionary genomics of yeast pathogens in the Saccharomycotina. Fems Yeast Research. PMID 27493146 DOI: 10.1093/Femsyr/Fow064 |
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Pryszcz LP, Németh T, Saus E, Ksiezopolska E, Hegedűsová E, Nosek J, Wolfe KH, Gacser A, Gabaldón T. Correction: The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis. Plos Genetics. 12: e1006202. PMID 27415787 DOI: 10.1371/Journal.Pgen.1006202 |
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Mariotti M, Lobanov AV, Manta B, Santesmasses D, Bofill A, Guigó R, Gabaldón T, Gladyshev VN. Lokiarchaeota marks the transition between the archaeal and eukaryotic selenocysteine encoding systems. Molecular Biology and Evolution. PMID 27413050 DOI: 10.1093/Molbev/Msw122 |
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Cruz F, Julca I, Gómez-Garrido J, Loska D, Marcet-Houben M, Cano E, Galán B, Frias L, Ribeca P, Derdak S, Gut M, Sánchez-Fernández M, García JL, Gut IG, Vargas P, et al. Genome sequence of the olive tree, Olea europaea. Gigascience. 5: 29. PMID 27346392 DOI: 10.1186/S13742-016-0134-5 |
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Baa-Puyoulet P, Parisot N, Febvay G, Huerta-Cepas J, Vellozo AF, Gabaldón T, Calevro F, Charles H, Colella S. ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database : the Journal of Biological Databases and Curation. 2016. PMID 27242037 DOI: 10.1093/Database/Baw081 |
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| 2016 |
Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, et al. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology : Cb. PMID 27238284 DOI: 10.1016/J.Cub.2016.04.038 |
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Pryszcz LP, Gabaldón T. Redundans: an assembly pipeline for highly heterozygous genomes. Nucleic Acids Research. PMID 27131372 DOI: 10.1093/Nar/Gkw294 |
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Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, et al. Standardized benchmarking in the quest for orthologs. Nature Methods. PMID 27043882 DOI: 10.1038/Nmeth.3830 |
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Figueras A, Robledo D, Corvelo A, Hermida M, Pereiro P, Rubiolo JA, Gómez-Garrido J, Carreté L, Bello X, Gut M, Gut IG, Marcet-Houben M, Forn-Cuní G, Galán B, García JL, et al. Whole Genome Sequencing of Turbot (Scophthalmus maximus; Pleuronectiformes): A Fish Adapted to Demersal Life. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 26951068 DOI: 10.1093/Dnares/Dsw007 |
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Vlasova A, Capella-Gutiérrez S, Rendón-Anaya M, Hernández-Oñate M, Minoche AE, Erb I, Câmara F, Prieto-Barja P, Corvelo A, Sanseverino W, Westergaard G, Dohm JC, Pappas GJ, Saburido-Alvarez S, Kedra D, et al. Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes. Genome Biology. 17: 32. PMID 26911872 DOI: 10.1186/S13059-016-0883-6 |
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Gabaldón T, Ginger ML, Michels PA. Peroxisomes in parasitic protists. Molecular and Biochemical Parasitology. PMID 26896770 DOI: 10.1016/J.Molbiopara.2016.02.005 |
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Vandewege MW, Mangum SF, Gabaldón T, Castoe TA, Ray DA, Hoffmann FG. Contrasting patterns of evolutionary diversification in the olfactory repertoires of reptile and bird genomes. Genome Biology and Evolution. PMID 26865070 DOI: 10.1093/Gbe/Evw013 |
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Pittis AA, Gabaldón T. Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry. Nature. 531: 101-4. PMID 26840490 DOI: 10.1038/Nature16941 |
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| 2016 |
Banani H, Marcet-Houben M, Ballester AR, Abbruscato P, González-Candelas L, Gabaldón T, Spadaro D. Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum. Bmc Genomics. 17: 19. PMID 26729047 DOI: 10.1186/S12864-015-2347-X |
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| 2016 |
Marcet-Houben M, Gabaldón T. Horizontal acquisition of toxic alkaloid synthesis in a clade of plant associated fungi. Fungal Genetics and Biology : Fg & B. 86: 71-80. PMID 26688468 DOI: 10.1016/J.Fgb.2015.12.006 |
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Gabaldón T, Carreté L. The birth of a deadly yeast: tracing the evolutionary emergence of virulence traits in Candida glabrata. Fems Yeast Research. 16: fov110. PMID 26684722 DOI: 10.1093/Femsyr/Fov110 |
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Julca I, Droby S, Sela N, Marcet-Houben M, Gabaldón T. Contrasting genomic diversity in two closely related postharvest pathogens: Penicillium digitatum and Penicillium expansum. Genome Biology and Evolution. PMID 26672008 DOI: 10.1093/Gbe/Evv252 |
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| 2015 |
Valdivia HO, Scholte LL, Oliveira G, Gabaldón T, Bartholomeu DC. The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships. Bmc Genomics. 16: 887. PMID 26518129 DOI: 10.1186/S12864-015-2091-2 |
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Pryszcz LP, Németh T, Saus E, Ksiezopolska E, Hegedűsová E, Nosek J, Wolfe KH, Gacser A, Gabaldón T. The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis. Plos Genetics. 11: e1005626. PMID 26517373 DOI: 10.1371/Journal.Pgen.1005626 |
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| 2015 |
Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, ... ... Gabaldon T, et al. Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proceedings of the National Academy of Sciences of the United States of America. 112: 13970-5. PMID 26483466 DOI: 10.1073/Pnas.1515937112 |
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| 2015 |
Marcet-Houben M, Gabaldón T. Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage. Plos Biology. 13: e1002220. PMID 26252497 DOI: 10.1371/Journal.Pbio.1002220 |
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| 2015 |
Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, et al. Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Scientific Reports. 5: 12596. PMID 26225486 DOI: 10.1038/Srep12596 |
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| 2015 |
Mariotti M, Santesmasses D, Capella-Gutierrez S, Mateo A, Arnan C, Johnson R, D'Aniello S, Yim SH, Gladyshev VN, Serras F, Corominas M, Gabaldón T, Guigó R. Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization. Genome Research. 25: 1256-67. PMID 26194102 DOI: 10.1101/Gr.190538.115 |
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Boeckmann B, Marcet-Houben M, Rees JA, Forslund K, Huerta-Cepas J, Muffato M, Yilmaz P, Xenarios I, Bork P, Lewis SE, Gabaldón T. Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream. Genome Biology and Evolution. 7: 1988-99. PMID 26133389 DOI: 10.1093/Gbe/Evv121 |
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Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, et al. Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts. Scientific Reports. 5: 11571. PMID 26108467 DOI: 10.1038/Srep11571 |
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Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, et al. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. Bmc Genomics. 16: 461. PMID 26076695 DOI: 10.1186/S12864-015-1660-8 |
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| 2015 |
Aversano R, Contaldi F, Ercolano MR, Grosso V, Iorizzo M, Tatino F, Xumerle L, Dal Molin A, Avanzato C, Ferrarini A, Delledonne M, Sanseverino W, Cigliano RA, Capella-Gutierrez S, Gabaldón T, et al. The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives. The Plant Cell. 27: 954-68. PMID 25873387 DOI: 10.1105/Tpc.114.135954 |
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Gabaldón T, Pittis AA. Origin and evolution of metabolic sub-cellular compartmentalization in eukaryotes. Biochimie. PMID 25869000 DOI: 10.1016/J.Biochi.2015.03.021 |
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| 2015 |
Gérecová G, Neboháčová M, Zeman I, Pryszcz LP, Tomáška Ľ, Gabaldón T, Nosek J. Metabolic gene clusters encoding the enzymes of two branches of the 3-oxoadipate pathway in the pathogenic yeast Candida albicans. Fems Yeast Research. 15. PMID 25743787 DOI: 10.1093/Femsyr/Fov006 |
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Krypotou E, Evangelidis T, Bobonis J, Pittis AA, Gabaldón T, Scazzocchio C, Mikros E, Diallinas G. Origin, diversification and substrate specificity in the family of NCS1/FUR transporters. Molecular Microbiology. 96: 927-50. PMID 25712422 DOI: 10.1111/Mmi.12982 |
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Ballester AR, Marcet-Houben M, Levin E, Sela N, Selma-Lázaro C, Carmona L, Wisniewski M, Droby S, González-Candelas L, Gabaldón T. Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity. Molecular Plant-Microbe Interactions : Mpmi. 28: 232-48. PMID 25338147 DOI: 10.1094/Mpmi-09-14-0261-Fi |
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| 2015 |
Gomariz M, Martínez-García M, Santos F, Rodriguez F, Capella-Gutiérrez S, Gabaldón T, Rosselló-Móra R, Meseguer I, Antón J. From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists. The Isme Journal. 9: 16-31. PMID 24926861 DOI: 10.1038/Ismej.2014.95 |
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Hinojosa-Alvarez S, Díaz-Jaimes P, Marcet-Houben M, Gabaldón T. The complete mitochondrial genome of the Giant Manta ray, Manta birostris. Mitochondrial Dna. 26: 787-8. PMID 24409907 DOI: 10.3109/19401736.2013.855753 |
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Pryszcz L, Gabaldon T. Redundans: an assembly pipeline for highly heterozygous genomes F1000research. 6. DOI: 10.7490/F1000Research.1097863.1 |
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| 2014 |
Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449 |
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Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451 |
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Castanera R, Pérez G, López L, Sancho R, Santoyo F, Alfaro M, Gabaldón T, Pisabarro AG, Oguiza JA, Ramírez L. Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi. Bmc Genomics. 15: 1071. PMID 25480150 DOI: 10.1186/1471-2164-15-1071 |
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| 2014 |
Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005 |
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| 2014 |
Lysøe E, Harris LJ, Walkowiak S, Subramaniam R, Divon HH, Riiser ES, Llorens C, Gabaldón T, Kistler HC, Jonkers W, Kolseth AK, Nielsen KF, Thrane U, Frandsen RJ. The genome of the generalist plant pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism. Plos One. 9: e112703. PMID 25409087 DOI: 10.1371/Journal.Pone.0112703 |
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| 2014 |
Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, et al. Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). Plos Genetics. 10: e1004496. PMID 25121733 DOI: 10.1371/Journal.Pgen.1004496 |
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| 2014 |
Schwarzmüller T, Ma B, Hiller E, Istel F, Tscherner M, Brunke S, Ames L, Firon A, Green B, Cabral V, Marcet-Houben M, Jacobsen ID, Quintin J, Seider K, Frohner I, et al. Systematic phenotyping of a large-scale Candida glabrata deletion collection reveals novel antifungal tolerance genes. Plos Pathogens. 10: e1004211. PMID 24945925 DOI: 10.1371/Journal.Ppat.1004211 |
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| 2014 |
Gabaldón T. Evolutionary considerations on the origin of peroxisomes from the endoplasmic reticulum, and their relationships with mitochondria. Cellular and Molecular Life Sciences : Cmls. 71: 2379-82. PMID 24838097 DOI: 10.1007/S00018-014-1640-1 |
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| 2014 |
Kunze G, Gaillardin C, Czernicka M, Durrens P, Martin T, Böer E, Gabaldón T, Cruz JA, Talla E, Marck C, Goffeau A, Barbe V, Baret P, Baronian K, Beier S, et al. The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest. Biotechnology For Biofuels. 7: 66. PMID 24834124 DOI: 10.1186/1754-6834-7-66 |
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Pryszcz LP, Németh T, Gácser A, Gabaldón T. Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies. Genome Biology and Evolution. 6: 1069-78. PMID 24747362 DOI: 10.1093/Gbe/Evu082 |
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Krisko A, Copic T, Gabaldón T, Lehner B, Supek F. Inferring gene function from evolutionary change in signatures of translation efficiency. Genome Biology. 15: R44. PMID 24580753 DOI: 10.1186/Gb-2014-15-3-R44 |
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Aguileta G, de Vienne DM, Ross ON, Hood ME, Giraud T, Petit E, Gabaldón T. High variability of mitochondrial gene order among fungi. Genome Biology and Evolution. 6: 451-65. PMID 24504088 DOI: 10.1093/Gbe/Evu028 |
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Capella-Gutierrez S, Kauff F, Gabaldón T. A phylogenomics approach for selecting robust sets of phylogenetic markers. Nucleic Acids Research. 42: e54. PMID 24476915 DOI: 10.1093/Nar/Gku071 |
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| 2014 |
Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P. eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Research. 42: D231-9. PMID 24297252 DOI: 10.1093/Nar/Gkt1253 |
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| 2014 |
Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T. PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Research. 42: D897-902. PMID 24275491 DOI: 10.1093/Nar/Gkt1177 |
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| 2014 |
Hatzihristidis T, Liu S, Pryszcz L, Hutchins AP, Gabaldón T, Tremblay ML, Miranda-Saavedra D. PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes. Methods (San Diego, Calif.). 65: 156-64. PMID 23911837 DOI: 10.1016/J.Ymeth.2013.07.031 |
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| 2014 |
Gabaldón T. A metabolic scenario for the evolutionary origin of peroxisomes from the endomembranous system. Cellular and Molecular Life Sciences : Cmls. 71: 2373-6. PMID 23884279 DOI: 10.1007/S00018-013-1424-Z |
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| 2014 |
Baa-Puyoulet P, Vellozo AF, Huerta-Cepas J, Febvay G, Calevro F, Gabaldon T, Sagot M, Charles H, Colella S. Annotating arthropods genome to study and compare their metabolism: the ArthropodaCyc collection of Cyc databases powered by CycADS F1000research. 5. DOI: 10.7490/F1000Research.1096896.1 |
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| 2013 |
Morales L, Noel B, Porcel B, Marcet-Houben M, Hullo MF, Sacerdot C, Tekaia F, Leh-Louis V, Despons L, Khanna V, Aury JM, Barbe V, Couloux A, Labadie K, Pelletier E, ... ... Gabaldon T, et al. Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina). Genome Biology and Evolution. 5: 2524-39. PMID 24317973 DOI: 10.1093/Gbe/Evt201 |
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| 2013 |
Pryszcz LP, Németh T, Gácser A, Gabaldón T. Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis. Genome Biology and Evolution. 5: 2382-92. PMID 24259314 DOI: 10.1093/Gbe/Evt185 |
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| 2013 |
Traeger S, Altegoer F, Freitag M, Gabaldon T, Kempken F, Kumar A, Marcet-Houben M, Pöggeler S, Stajich JE, Nowrousian M. The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution. Plos Genetics. 9: e1003820. PMID 24068976 DOI: 10.1371/Journal.Pgen.1003820 |
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| 2013 |
Hagen F, Ceresini PC, Polacheck I, Ma H, van Nieuwerburgh F, Gabaldón T, Kagan S, Pursall ER, Hoogveld HL, van Iersel LJ, Klau GW, Kelk SM, Stougie L, Bartlett KH, Voelz K, et al. Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest. Plos One. 8: e71148. PMID 23940707 DOI: 10.1371/Journal.Pone.0071148 |
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| 2013 |
Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050 |
0.437 |
|
| 2013 |
Lavín JL, Marcet-Houben M, Gutiérrez-Vázquez RL, Ramírez L, Pisabarro AG, Gabaldón T, Oguiza JA. FUNGALOXPHOS: an integrated database for oxidative phosphorylation in fungi. Mitochondrion. 13: 357-9. PMID 23628689 DOI: 10.1016/J.Mito.2013.04.009 |
0.406 |
|
| 2013 |
Gabaldón T, Koonin EV. Functional and evolutionary implications of gene orthology. Nature Reviews. Genetics. 14: 360-6. PMID 23552219 DOI: 10.1038/Nrg3456 |
0.429 |
|
| 2013 |
Capella-Gutiérrez S, Gabaldón T. Measuring guide-tree dependency of inferred gaps in progressive aligners. Bioinformatics (Oxford, England). 29: 1011-7. PMID 23435067 DOI: 10.1093/Bioinformatics/Btt095 |
0.304 |
|
| 2013 |
Jiménez-Guri E, Huerta-Cepas J, Cozzuto L, Wotton KR, Kang H, Himmelbauer H, Roma G, Gabaldón T, Jaeger J. Comparative transcriptomics of early dipteran development. Bmc Genomics. 14: 123. PMID 23432914 DOI: 10.1186/1471-2164-14-123 |
0.441 |
|
| 2013 |
Mohd-Padil H, Mohd-Adnan A, Gabaldón T. Phylogenetic analyses uncover a novel clade of transferrin in nonmammalian vertebrates. Molecular Biology and Evolution. 30: 894-905. PMID 23258311 DOI: 10.1093/Molbev/Mss325 |
0.433 |
|
| 2012 |
Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, González-Candelas L, Gabaldón T. Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. Bmc Genomics. 13: 646. PMID 23171342 DOI: 10.1186/1471-2164-13-646 |
0.5 |
|
| 2012 |
Silva LL, Marcet-Houben M, Nahum LA, Zerlotini A, Gabaldón T, Oliveira G. The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology. Bmc Genomics. 13: 617. PMID 23148687 DOI: 10.1186/1471-2164-13-617 |
0.439 |
|
| 2012 |
Valach M, Pryszcz LP, Tomaska L, Gacser A, Gabaldón T, Nosek J. Mitochondrial genome variability within the Candida parapsilosis species complex. Mitochondrion. 12: 514-9. PMID 22824459 DOI: 10.1016/J.Mito.2012.07.109 |
0.373 |
|
| 2012 |
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González VM, Hénaff E, Câmara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, et al. The genome of melon (Cucumis melo L.). Proceedings of the National Academy of Sciences of the United States of America. 109: 11872-7. PMID 22753475 DOI: 10.1073/Pnas.1205415109 |
0.504 |
|
| 2012 |
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, Copeland A, Lindquist E, Barry K, Compagno C, Bisson L, Grigoriev IV, Gabaldón T, Phister T. The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties. International Journal of Food Microbiology. 157: 202-9. PMID 22663979 DOI: 10.1016/J.Ijfoodmicro.2012.05.008 |
0.365 |
|
| 2012 |
Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T. Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi. Bmc Biology. 10: 47. PMID 22651672 DOI: 10.1186/1741-7007-10-47 |
0.404 |
|
| 2012 |
Miranda-Saavedra D, Gabaldón T, Barton GJ, Langsley G, Doerig C. The kinomes of apicomplexan parasites. Microbes and Infection / Institut Pasteur. 14: 796-810. PMID 22587893 DOI: 10.1016/J.Micinf.2012.04.007 |
0.39 |
|
| 2012 |
Bohle HM, Gabaldón T. Selection of marker genes using whole-genome DNA polymorphism analysis. Evolutionary Bioinformatics Online. 8: 161-9. PMID 22474405 DOI: 10.4137/Ebo.S8989 |
0.418 |
|
| 2012 |
Dessimoz C, Gabaldón T, Roos DS, Sonnhammer EL, Herrero J. Toward community standards in the quest for orthologs. Bioinformatics (Oxford, England). 28: 900-4. PMID 22332236 DOI: 10.1093/Bioinformatics/Bts050 |
0.324 |
|
| 2012 |
Ollivier M, Gabaldón T, Poulain J, Gavory F, Leterme N, Gauthier JP, Legeai F, Tagu D, Simon JC, Rispe C. Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode Genome Biology and Evolution. 4: 155-167. PMID 22215803 DOI: 10.1093/Gbe/Evr140 |
0.378 |
|
| 2012 |
Lee JH, Wan KL, Mohd-Adnan A, Gabaldón T. Evolution of the ferritin family in vertebrates Trends in Evolutionary Biology. 4: 3. DOI: 10.4081/Eb.2012.E3 |
0.392 |
|
| 2011 |
Silva LL, Marcet-Houben M, Zerlotini A, Gabaldón T, Oliveira G, Nahum LA. Evolutionary histories of expanded peptidase families in Schistosoma mansoni. MemóRias Do Instituto Oswaldo Cruz. 106: 864-77. PMID 22124560 DOI: 10.1590/S0074-02762011000700013 |
0.362 |
|
| 2011 |
Sánchez R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutíerrez S, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Research. 39: W470-4. PMID 21646336 DOI: 10.1093/Nar/Gkr408 |
0.332 |
|
| 2011 |
Huerta-Cepas J, Dopazo J, Huynen MA, Gabaldón T. Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings in Bioinformatics. 12: 442-8. PMID 21515902 DOI: 10.1093/Bib/Bbr022 |
0.578 |
|
| 2011 |
Vellozo AF, Véron AS, Baa-Puyoulet P, Huerta-Cepas J, Cottret L, Febvay G, Calevro F, Rahbé Y, Douglas AE, Gabaldón T, Sagot MF, Charles H, Colella S. CycADS: an annotation database system to ease the development and update of BioCyc databases. Database : the Journal of Biological Databases and Curation. 2011: bar008. PMID 21474551 DOI: 10.1093/Database/Bar008 |
0.421 |
|
| 2011 |
Marcet-Houben M, Gabaldón T. TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees. Nucleic Acids Research. 39: e66. PMID 21335609 DOI: 10.1093/Nar/Gkr087 |
0.353 |
|
| 2011 |
Roetzer A, Klopf E, Gratz N, Marcet-Houben M, Hiller E, Rupp S, Gabaldón T, Kovarik P, Schüller C. Regulation of Candida glabrata oxidative stress resistance is adapted to host environment. Febs Letters. 585: 319-27. PMID 21156173 DOI: 10.1016/J.Febslet.2010.12.006 |
0.311 |
|
| 2011 |
Pryszcz LP, Huerta-Cepas J, Gabaldón T. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score. Nucleic Acids Research. 39: e32. PMID 21149260 DOI: 10.1093/Nar/Gkq953 |
0.445 |
|
| 2011 |
Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Research. 39: D556-60. PMID 21075798 DOI: 10.1093/Nar/Gkq1109 |
0.527 |
|
| 2011 |
Huerta-Cepas J, Gabaldón T. Assigning duplication events to relative temporal scales in genome-wide studies. Bioinformatics (Oxford, England). 27: 38-45. PMID 21075746 DOI: 10.1093/Bioinformatics/Btq609 |
0.423 |
|
| 2011 |
Roetzer A, Gabaldón T, Schüller C. From Saccharomyces cerevisiae to Candida glabratain a few easy steps: important adaptations for an opportunistic pathogen. Fems Microbiology Letters. 314: 1-9. PMID 20846362 DOI: 10.1111/J.1574-6968.2010.02102.X |
0.349 |
|
| 2010 |
Lingner T, Mühlhausen S, Gabaldón T, Notredame C, Meinicke P. Predicting phenotypic traits of prokaryotes from protein domain frequencies. Bmc Bioinformatics. 11: 481. PMID 20868492 DOI: 10.1186/1471-2105-11-481 |
0.46 |
|
| 2010 |
Gil Borlado MC, Moreno Lastres D, Gonzalez Hoyuela M, Moran M, Blazquez A, Pello R, Marin Buera L, Gabaldon T, Garcia Peñas JJ, Martín MA, Arenas J, Ugalde C. Impact of the mitochondrial genetic background in complex III deficiency. Plos One. 5. PMID 20862300 DOI: 10.1371/Journal.Pone.0012801 |
0.313 |
|
| 2010 |
Benítez-Páez A, Villarroya M, Douthwaite S, Gabaldón T, Armengod ME. YibK is the 2'-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNA(Leu) isoacceptors. Rna (New York, N.Y.). 16: 2131-43. PMID 20855540 DOI: 10.1261/Rna.2245910 |
0.317 |
|
| 2010 |
Gabaldón T, Capella-Gutiérrez S. Lack of phylogenetic support for a supposed actinobacterial origin of peroxisomes. Gene. 465: 61-5. PMID 20600706 DOI: 10.1016/J.Gene.2010.06.004 |
0.398 |
|
| 2010 |
Ahmadinejad N, Dagan T, Gruenheit N, Martin W, Gabaldón T. Evolution of spliceosomal introns following endosymbiotic gene transfer. Bmc Evolutionary Biology. 10: 57. PMID 20178587 DOI: 10.1186/1471-2148-10-57 |
0.412 |
|
| 2010 |
Peña A, Teeling H, Huerta-Cepas J, Santos F, Yarza P, Brito-Echeverría J, Lucio M, Schmitt-Kopplin P, Meseguer I, Schenowitz C, Dossat C, Barbe V, Dopazo J, Rosselló-Mora R, Schüler M, et al. Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. The Isme Journal. 4: 882-95. PMID 20164864 DOI: 10.1038/Ismej.2010.6 |
0.378 |
|
| 2010 |
Milinkovitch MC, Helaers R, Depiereux E, Tzika AC, Gabaldón T. 2x genomes--depth does matter. Genome Biology. 11: R16. PMID 20144222 DOI: 10.1186/Gb-2010-11-2-R16 |
0.464 |
|
| 2010 |
Gabaldón T. Peroxisome diversity and evolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 765-73. PMID 20124343 DOI: 10.1098/Rstb.2009.0240 |
0.405 |
|
| 2010 |
Mihailovich M, Militti C, Gabaldón T, Gebauer F. Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 32: 109-18. PMID 20091748 DOI: 10.1002/Bies.200900122 |
0.306 |
|
| 2010 |
Huerta-Cepas J, Dopazo J, Gabaldón T. ETE: a python Environment for Tree Exploration. Bmc Bioinformatics. 11: 24. PMID 20070885 DOI: 10.1186/1471-2105-11-24 |
0.327 |
|
| 2010 |
Marcet-Houben M, Gabaldón T. Acquisition of prokaryotic genes by fungal genomes. Trends in Genetics : Tig. 26: 5-8. PMID 19969385 DOI: 10.1016/J.Tig.2009.11.007 |
0.476 |
|
| 2010 |
Schlüter A, Real-Chicharro A, Gabaldón T, Sánchez-Jiménez F, Pujol A. PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome. Nucleic Acids Research. 38: D800-5. PMID 19892824 DOI: 10.1093/Nar/Gkp935 |
0.502 |
|
| 2009 |
Marcet-Houben M, Marceddu G, Gabaldón T. Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence. Bmc Evolutionary Biology. 9: 295. PMID 20025735 DOI: 10.1186/1471-2148-9-295 |
0.388 |
|
| 2009 |
Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics (Oxford, England). 25: 1972-3. PMID 19505945 DOI: 10.1093/Bioinformatics/Btp348 |
0.347 |
|
| 2009 |
Marcet-Houben M, Gabaldón T. The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome. Plos One. 4: e4357. PMID 19190756 DOI: 10.1371/Journal.Pone.0004357 |
0.433 |
|
| 2008 |
Gabaldón T. Large-scale assignment of orthology: back to phylogenetics? Genome Biology. 9: 235. PMID 18983710 DOI: 10.1186/Gb-2008-9-10-235 |
0.432 |
|
| 2008 |
Gabaldón T. Comparative genomics-based prediction of protein function. Methods in Molecular Biology (Clifton, N.J.). 439: 387-401. PMID 18370117 DOI: 10.1007/978-1-59745-188-8_26 |
0.497 |
|
| 2008 |
Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Research. 36: D491-6. PMID 17962297 DOI: 10.1093/Nar/Gkm899 |
0.507 |
|
| 2007 |
Gabaldón T. Evolution of proteins and proteomes: a phylogenetics approach. Evolutionary Bioinformatics Online. 1: 51-61. PMID 19325853 |
0.357 |
|
| 2007 |
Gabaldón T, Huynen MA. From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism. Plos Computational Biology. 3: e219. PMID 17983265 DOI: 10.1371/Journal.Pcbi.0030219 |
0.566 |
|
| 2007 |
Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biology. 8: R109. PMID 17567924 DOI: 10.1186/Gb-2007-8-6-R109 |
0.467 |
|
| 2007 |
Gabaldón T, Peretó J, Montero F, Gil R, Latorre A, Moya A. Structural analyses of a hypothetical minimal metabolism. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1751-62. PMID 17510022 DOI: 10.1098/Rstb.2007.2067 |
0.37 |
|
| 2007 |
Tárraga J, Medina I, Arbiza L, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research. 35: W38-42. PMID 17452346 DOI: 10.1093/Nar/Gkm224 |
0.392 |
|
| 2007 |
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A. PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Research. 35: D815-22. PMID 17135190 DOI: 10.1093/Nar/Gkl935 |
0.466 |
|
| 2006 |
Gabaldón T. Computational approaches for the prediction of protein function in the mitochondrion. American Journal of Physiology. Cell Physiology. 291: C1121-8. PMID 16870830 DOI: 10.1152/Ajpcell.00225.2006 |
0.333 |
|
| 2006 |
Gabaldón T, Snel B, van Zimmeren F, Hemrika W, Tabak H, Huynen MA. Origin and evolution of the peroxisomal proteome. Biology Direct. 1: 8. PMID 16556314 DOI: 10.1186/1745-6150-1-8 |
0.712 |
|
| 2005 |
Gabaldón T, Huynen MA. Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. Bioinformatics (Oxford, England). 21: ii144-50. PMID 16204094 DOI: 10.1093/Bioinformatics/Bti1124 |
0.624 |
|
| 2005 |
Gabaldón T, Rainey D, Huynen MA. Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (Complex I). Journal of Molecular Biology. 348: 857-70. PMID 15843018 DOI: 10.1016/J.Jmb.2005.02.067 |
0.627 |
|
| 2005 |
Huynen MA, Gabaldón T, Snel B. Variation and evolution of biomolecular systems: searching for functional relevance. Febs Letters. 579: 1839-45. PMID 15763561 DOI: 10.1016/J.Febslet.2005.02.004 |
0.732 |
|
| 2005 |
Boxma B, de Graaf RM, van der Staay GW, van Alen TA, Ricard G, Gabaldón T, van Hoek AH, Moon-van der Staay SY, Koopman WJ, van Hellemond JJ, Tielens AG, Friedrich T, Veenhuis M, Huynen MA, Hackstein JH. An anaerobic mitochondrion that produces hydrogen. Nature. 434: 74-9. PMID 15744302 DOI: 10.1038/Nature03343 |
0.578 |
|
| 2005 |
Huynen MA, Spronk CA, Gabaldón T, Snel B. Combining data from genomes, Y2H and 3D structure indicates that BolA is a reductase interacting with a glutaredoxin. Febs Letters. 579: 591-6. PMID 15670813 DOI: 10.1016/J.Febslet.2004.11.111 |
0.726 |
|
| 2004 |
Gabaldón T, Huynen MA. Shaping the mitochondrial proteome. Biochimica Et Biophysica Acta. 1659: 212-20. PMID 15576054 DOI: 10.1016/J.Bbabio.2004.07.011 |
0.592 |
|
| 2004 |
Gabaldón T, Huynen MA. Prediction of protein function and pathways in the genome era. Cellular and Molecular Life Sciences : Cmls. 61: 930-44. PMID 15095013 DOI: 10.1007/S00018-003-3387-Y |
0.634 |
|
| 2003 |
Gabaldón T, Huynen MA. Reconstruction of the proto-mitochondrial metabolism. Science (New York, N.Y.). 301: 609. PMID 12893934 DOI: 10.1126/Science.1085463 |
0.612 |
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