Eranthie Weerapana, Ph.D. - Related publications

2010- Chemistry Boston College, Newton, MA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Chang J, Cai W, Liang C, Tang Q, Chen X, Jiang Y, Mao L, Wang M. Enzyme-Instructed Activation of Pro-protein Therapeutics (PPT) In Vivo. Journal of the American Chemical Society. PMID 31589435 DOI: 10.1021/jacs.9b08669   
2019 Foyer CH, Baker A, Wright M, Sparkes IA, Mhamdi A, Schippers JHM, Van Breusegem F. On the move: redox-dependent protein relocation in plants. Journal of Experimental Botany. PMID 31421053 DOI: 10.1093/jxb/erz330   
2019 Li G, Eckert MA, Chang JW, Montgomery JE, Chryplewicz A, Lengyel E, Moellering RE. Ultrasensitive, multiplexed chemoproteomic profiling with soluble activity-dependent proximity ligation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31591248 DOI: 10.1073/pnas.1912934116   
2019 Ochtrop P, Ernst S, Itzen A, Hedberg C. Exploring the Substrate Scope of the Bacterial Phosphocholine Transferase AnkX for Versatile Protein Functionalization. Chembiochem : a European Journal of Chemical Biology. PMID 31054261 DOI: 10.1002/cbic.201900200   
2019 Groppe JC. Induced degradation of protein kinases by bifunctional small molecules: a next-generation strategy. Expert Opinion On Drug Discovery. 1-17. PMID 31513432 DOI: 10.1080/17460441.2019.1660641   
2019 Macek B, Forchhammer K, Hardouin J, Weber-Ban E, Grangeasse C, Mijakovic I. Protein post-translational modifications in bacteria. Nature Reviews. Microbiology. PMID 31485032 DOI: 10.1038/s41579-019-0243-0   
2019 Mair A, Xu SL, Branon TC, Ting AY, Bergmann DC. Proximity labeling of protein complexes and cell type-specific organellar proteomes in Arabidopsis enabled by TurboID. Elife. 8. PMID 31535972 DOI: 10.7554/eLife.47864   
2019 Chen Y, Li Y. Site-specific determination of lysine acetylation stoichiometries on the proteome-scale. Methods in Enzymology. 626: 115-132. PMID 31606072 DOI: 10.1016/bs.mie.2019.06.021   
2019 Morgan E, Doh JK, Beatty KE, Reich NO. VIPER : Improved live cell intracellular protein tracking. Acs Applied Materials & Interfaces. PMID 31545582 DOI: 10.1021/acsami.9b12679   
2019 Matico R, Szewczuk LM, Pietrak B, Chen S, Dul E, Bonnette WG, Meinhold DW, Quinque G, Totoritis R, Lewis T, Grimes M, Fornwald D, McCormick PM, Schaber M, Jiang Y, et al. Modular Protein Ligation: A New Paradigm as a Reagent Platform for Pre-Clinical Drug Discovery. Scientific Reports. 9: 13078. PMID 31511536 DOI: 10.1038/s41598-019-49149-2   
2019 Lim HC, Bernhardt TG. A PopZ-Linked Apical Recruitment Assay for Studying Protein-Protein Interactions in the Bacterial Cell Envelope. Molecular Microbiology. PMID 31550057 DOI: 10.1111/mmi.14391   
2019 Grassi L, Cabrele C. Susceptibility of protein therapeutics to spontaneous chemical modifications by oxidation, cyclization, and elimination reactions. Amino Acids. PMID 31576455 DOI: 10.1007/s00726-019-02787-2   
2019 Qian EA, Han Y, Messina MS, Maynard HD, Král P, Spokoyny AM. Multivalent Cluster Nanomolecules for Inhibiting Protein-Protein Interactions. Bioconjugate Chemistry. PMID 31498600 DOI: 10.1021/acs.bioconjchem.9b00526   
2019 Leung CH, Zhang JT, Yang GJ, Liu H, Han QB, Ma DL. Emerging Screening Approaches in the Development of Nrf2-Keap1 Protein-Protein Interaction Inhibitors. International Journal of Molecular Sciences. 20. PMID 31509940 DOI: 10.3390/ijms20184445   
2019 Rehm FBH, Harmand TJ, Yap K, Durek T, Craik DJ, Ploegh HL. Site-specific sequential protein labeling catalyzed by a single recombinant ligase. Journal of the American Chemical Society. PMID 31573802 DOI: 10.1021/jacs.9b09166   
2019 Choi S, Lee C. Functional characterization and proteomic analysis of porcine deltacoronavirus accessory protein NS7. Journal of Microbiology and Biotechnology. PMID 31546302 DOI: 10.4014/jmb.1908.08013   
2019 Wang H, He M, Willard B, Wu Q. Cross-linking, Immunoprecipitation and Proteomic Analysis to Identify Interacting Proteins in Cultured Cells. Bio-Protocol. 9. PMID 31528665 DOI: 10.21769/BioProtoc.3258   
2019 Joshi K, Meena S, Meena LS. Analysis of predicted amino acid biosynthesis in Rv3344c in Mycobacterium tuberculosis H Rv using bioinformatics tools. Biotechnology and Applied Biochemistry. PMID 31596006 DOI: 10.1002/bab.1834   
2019 Chen RP, Gaynor AS, Chen W. Synthetic biology approaches for targeted protein degradation. Biotechnology Advances. 107446. PMID 31505248 DOI: 10.1016/j.biotechadv.2019.107446   
2019 Mondal P, Krishnamurthy VV, Sharum SR, Haack N, Zhou H, Cheng J, Yang J, Zhang K. Repurposing protein degradation for optogenetic modulation of protein activities. Acs Synthetic Biology. PMID 31600062 DOI: 10.1021/acssynbio.9b00285   
2019 Muntel J, Gandhi T, Verbeke L, Bernhardt OM, Treiber T, Bruderer R, Reiter L. Surpassing 10 000 identified and quantified proteins in a single run by optimizing current LC-MS instrumentation and data analysis strategy. Molecular Omics. PMID 31465043 DOI: 10.1039/c9mo00082h   
2019 Koo B, Dolan NS, Wucherer K, Munch HK, Francis MB. Site-Selective Protein Immobilization on Polymeric Supports through N-Terminal Imidazolidinone Formation. Biomacromolecules. PMID 31448594 DOI: 10.1021/acs.biomac.9b01002   
2019 Zou J, Chen G, Du F, Yuan Y, Huang X, Dong J, Xie K, Cui X, Tang Z. A general fluorescent light-up probe for staining and quantifying protein. Royal Society Open Science. 6: 190580. PMID 31598246 DOI: 10.1098/rsos.190580   
2019 Cheng M, Guo C, Gross ML. The Application of Fluorine-Containing Reagents in Structural Proteomics. Angewandte Chemie (International Ed. in English). PMID 31588625 DOI: 10.1002/anie.201907662   
2019 de Paula E Silva ACA, de Oliveira HC, Scorzoni L, Marcos CM, Dos Santos CT, Fusco-Almeida AM, Salina ACG, Medeiros AI, Almeida F, Li SC, Boone C, Mendes-Giannini MJS. Decyl gallate as a possible inhibitor of N-glycosylation process in . Antimicrobial Agents and Chemotherapy. PMID 31451502 DOI: 10.1128/AAC.01909-18   
2019 Tatli M, Hebert AS, Coon JJ, Amador-Noguez D. Genome Wide Phosphoproteome Analysis of Under Anaerobic, Aerobic, and N-Fixing Conditions. Frontiers in Microbiology. 10: 1986. PMID 31551951 DOI: 10.3389/fmicb.2019.01986   
2019 Matamoros MA, Cutrona MC, Wienkoop S, Begara-Morales JC, Sandal N, Orera I, Barroso JB, Stougaard J, Becana M. Altered plant and nodule development and protein S-nitrosylation in Lotus japonicus mutants deficient in S-nitrosoglutathione reductases. Plant & Cell Physiology. PMID 31529085 DOI: 10.1093/pcp/pcz182   
2019 Miller M, Vitale D, Kahn PC, Rost B, Bromberg Y. funtrp: identifying protein positions for variation driven functional tuning. Nucleic Acids Research. PMID 31584091 DOI: 10.1093/nar/gkz818   
2019 Tayyrov A, Azevedo S, Herzog R, Vogt E, Arzt S, Lüthy P, Müller P, Rühl M, Hennicke F, Künzler M. Heterologous production and functional characterization of ageritin, a novel type of ribotoxin highly expressed during fruiting of the edible mushroom . Applied and Environmental Microbiology. PMID 31444206 DOI: 10.1128/AEM.01549-19   
2019 Gay M, Sánchez-Jiménez E, Villarreal L, Vilanova M, Huguet R, Arauz-Garofalo G, Díaz-Lobo M, López-Ferrer D, Vilaseca M. Top-Down Proteomics Applied to Human Cerebrospinal Fluid. Methods in Molecular Biology (Clifton, N.J.). 2044: 193-219. PMID 31432414 DOI: 10.1007/978-1-4939-9706-0_12   
2019 Jaremko MJ, Davis TD, Corpuz JC, Burkart MD. Type II non-ribosomal peptide synthetase proteins: structure, mechanism, and protein-protein interactions. Natural Product Reports. PMID 31593192 DOI: 10.1039/c9np00047j   
2019 Miao W, Li L, Wang Y. High-throughput Targeted Quantitative Analysis of the Interaction between HSP90 and Kinases. Analytical Chemistry. PMID 31476117 DOI: 10.1021/acs.analchem.9b03320   
2019 Chen SH, Li CW. Detection and Characterization of Catechol Quinone-Derived Protein Adducts Using Biomolecular Mass Spectrometry. Frontiers in Chemistry. 7: 571. PMID 31497592 DOI: 10.3389/fchem.2019.00571   
2019 Mukherjee H, Su N, Belmonte MA, Hargreaves D, Patel J, Tentarelli S, Aquila B, Grimster NP. Discovery and optimization of covalent Bcl-xL antagonists. Bioorganic & Medicinal Chemistry Letters. 126682. PMID 31606346 DOI: 10.1016/j.bmcl.2019.126682   
2019 Williams CAC, Soufi A, Pollard SM. Post-translational modification of SOX family proteins: key biochemical targets in cancer? Seminars in Cancer Biology. PMID 31539559 DOI: 10.1016/j.semcancer.2019.09.009   
2019 Wu Z, Malty R, Moutaoufik MT, Zhang Q, Jessulat M, Babu M. A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes. Advances in Experimental Medicine and Biology. 1158: 83-100. PMID 31452137 DOI: 10.1007/978-981-13-8367-0_6   
2019 Anabuki T, Ito Y, Ohashi K, Takasuka TE, Matsuura H, Takahashi K. Identification of recombinant AtPYL2, an abscisic acid receptor, in E. coli using a substrate-derived bioactive small molecule, a biotin linker with alkyne and amino groups, and a protein cross-linker. Bioorganic & Medicinal Chemistry Letters. 126634. PMID 31563414 DOI: 10.1016/j.bmcl.2019.126634   
2019 Jarvis P. Chloroplast Research Methods: Probing The Targeting, Localization And Interactions Of Chloroplast Proteins. Journal of Visualized Experiments : Jove. PMID 31441907 DOI: 10.3791/59935   
2019 Baggelaar MP, den Dulk H, Florea BI, Fazio D, Bernab Ograve N, Raspa M, Janssen APA, Scavizzi F, Barboni B, Overkleeft HS, Maccarrone M, van der Stelt M. ABHD2 inhibitor identified by activity-based protein profiling reduces acrosome reaction. Acs Chemical Biology. PMID 31525885 DOI: 10.1021/acschembio.9b00640   
2019 Shi P, Qin J, Wu X, Wang L, Zhang T, Yang D, Zan X, Appelhans D. A facile and universal method to efficiently fabricate diverse protein capsules for multiple potential applications. Acs Applied Materials & Interfaces. PMID 31553877 DOI: 10.1021/acsami.9b15019   
2019 Qin X, Yu C, Wei J, Li L, Zhang C, Wu Q, Liu J, Yao SQ, Huang W. Rational Design of Nanocarriers for Intracellular Protein Delivery. Advanced Materials (Deerfield Beach, Fla.). e1902791. PMID 31496027 DOI: 10.1002/adma.201902791   
2019 Singh SK, Goel G, Rathore AS. A novel approach for protein identification from complex cell proteome using modified peptide mass fingerprinting algorithm. Electrophoresis. PMID 31576581 DOI: 10.1002/elps.201900128   
2019 Guo L, Geng L, Sun X, Wang M, Shu C, Zhang J. [Preparation and purification of Cry1Ah protein candidate reference material]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 35: 1511-1519. PMID 31441622 DOI: 10.13345/j.cjb.190053   
2019 Dai Z, Lee AJ, Roberts S, Sysoeva TA, Huang S, Dzuricky M, Yang X, Zhang X, Liu Z, Chilkoti A, You L. Versatile biomanufacturing through stimulus-responsive cell-material feedback. Nature Chemical Biology. PMID 31527836 DOI: 10.1038/s41589-019-0357-8   
2019 Chen Y, Leng M, Gao Y, Zhan D, Choi JM, Song L, Li K, Xia X, Zhang C, Liu M, Ji S, Jain A, Saltzman AB, Malovannaya A, Qin J, et al. A cross-linking-aided IP/MS workflow reveals extensive intracellular trafficking in time-resolved, signal-dependent EGFR proteome. Journal of Proteome Research. PMID 31442056 DOI: 10.1021/acs.jproteome.9b00427   
2019 Pinto-Fernández A, Davis S, Schofield AB, Scott HC, Zhang P, Salah E, Mathea S, Charles PD, Damianou A, Bond G, Fischer R, Kessler BM. Comprehensive Landscape of Active Deubiquitinating Enzymes Profiled by Advanced Chemoproteomics. Frontiers in Chemistry. 7: 592. PMID 31555637 DOI: 10.3389/fchem.2019.00592   
2019 Zhao J, Li Q, Wu J, Zhou C, Cao Y, Li X, Niu J. Structure-Based Site-Specific PEGylation of Fibroblast Growth Factor 2 Facilitates Rational Selection of Conjugate Sites. Biotechnology Journal. e1900203. PMID 31556248 DOI: 10.1002/biot.201900203   
2019 Davies JA, Ireland S, Harding S, Sharman JL, Southan C, Dominguez-Monedero A. Inverse pharmacology: Approaches and tools for introducing druggability into engineered proteins. Biotechnology Advances. 107439. PMID 31494210 DOI: 10.1016/j.biotechadv.2019.107439   
2019 Xu Y, Andrade J, Ueberheide B, Neel BG. Activated Thiol Sepharose-based proteomic approach to quantify reversible protein oxidation. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201900693R. PMID 31451050 DOI: 10.1096/fj.201900693R   
2019 Sberro H, Fremin BJ, Zlitni S, Edfors F, Greenfield N, Snyder MP, Pavlopoulos GA, Kyrpides NC, Bhatt AS. Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178: 1245-1259.e14. PMID 31402174 DOI: 10.1016/j.cell.2019.07.016