| Year |
Citation |
Score |
| 2024 |
Angeloni A, Fissette S, Kaya D, Hammond JM, Gamaarachchi H, Deveson IW, Klose RJ, Li W, Zhang X, Bogdanovic O. Extensive DNA methylome rearrangement during early lamprey embryogenesis. Nature Communications. 15: 1977. PMID 38438347 DOI: 10.1038/s41467-024-46085-2 |
0.524 |
|
| 2023 |
Ross SE, Vázquez-Marín J, Gert KRB, González-Rajal Á, Dinger ME, Pauli A, Martínez-Morales JR, Bogdanovic O. Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species. Nucleic Acids Research. PMID 37615576 DOI: 10.1093/nar/gkad695 |
0.502 |
|
| 2023 |
Marlétaz F, de la Calle-Mustienes E, Acemel RD, Paliou C, Naranjo S, Martínez-García PM, Cases I, Sleight VA, Hirschberger C, Marcet-Houben M, Navon D, Andrescavage A, Skvortsova K, Duckett PE, González-Rajal Á, ... Bogdanovic O, et al. The little skate genome and the evolutionary emergence of wing-like fins. Nature. PMID 37046085 DOI: 10.1038/s41586-023-05868-1 |
0.363 |
|
| 2022 |
Skvortsova K, Bertrand S, Voronov D, Duckett PE, Ross SE, Magri MS, Maeso I, Weatheritt RJ, Gómez Skarmeta JL, Arnone MI, Escriva H, Bogdanovic O. Active DNA demethylation of developmental -regulatory regions predates vertebrate origins. Science Advances. 8: eabn2258. PMID 36459547 DOI: 10.1126/sciadv.abn2258 |
0.439 |
|
| 2022 |
de Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P, Lister R. Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology. 23: 163. PMID 35883107 DOI: 10.1186/s13059-022-02728-5 |
0.742 |
|
| 2022 |
Wyatt CDR, Pernaute B, Gohr A, Miret-Cuesta M, Goyeneche L, Rovira Q, Salzer MC, Boke E, Bogdanovic O, Bonnal S, Irimia M. A developmentally programmed splicing failure contributes to DNA damage response attenuation during mammalian zygotic genome activation. Science Advances. 8: eabn4935. PMID 35417229 DOI: 10.1126/sciadv.abn4935 |
0.402 |
|
| 2022 |
Angeloni A, Ferguson J, Bogdanovic O. Nanopore Sequencing and Data Analysis for Base-Resolution Genome-Wide 5-Methylcytosine Profiling. Methods in Molecular Biology (Clifton, N.J.). 2458: 75-94. PMID 35103963 DOI: 10.1007/978-1-0716-2140-0_5 |
0.339 |
|
| 2021 |
Ross SE, Hesselson D, Bogdanovic O. Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain. Frontiers in Cell and Developmental Biology. 9: 643603. PMID 33748137 DOI: 10.3389/fcell.2021.643603 |
0.514 |
|
| 2021 |
de Mendoza A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, de la Calle-Mustienes E, Gómez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, ... ... Bogdanovic O, et al. The emergence of the brain non-CpG methylation system in vertebrates. Nature Ecology & Evolution. PMID 33462491 DOI: 10.1038/s41559-020-01371-2 |
0.729 |
|
| 2020 |
Geng FS, de la Calle-Mustienes E, Gómez-Skarmeta JL, Lister R, Bogdanovic O. Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos. Micropublication Biology. 2020. PMID 33313487 DOI: 10.17912/micropub.biology.000341 |
0.635 |
|
| 2019 |
de Mendoza A, Lister R, Bogdanovic O. Evolution of DNA methylome diversity in eukaryotes. Journal of Molecular Biology. PMID 31726061 DOI: 10.1016/J.Jmb.2019.11.003 |
0.685 |
|
| 2019 |
de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM, Lister R. Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology & Evolution. 3: 1464-1473. PMID 31558833 DOI: 10.1038/S41559-019-0983-2 |
0.753 |
|
| 2019 |
Skvortsova K, Tarbashevich K, Stehling M, Lister R, Irimia M, Raz E, Bogdanovic O. Retention of paternal DNA methylome in the developing zebrafish germline. Nature Communications. 10: 3054. PMID 31296860 DOI: 10.1038/S41467-019-10895-6 |
0.701 |
|
| 2019 |
Skvortsova K, Masle-Farquhar E, Luu PL, Song JZ, Qu W, Zotenko E, Gould CM, Du Q, Peters TJ, Colino-Sanguino Y, Pidsley R, Nair SS, Khoury A, Smith GC, Miosge LA, ... ... Bogdanovic O, et al. DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns. Cancer Cell. 35: 297-314.e8. PMID 30753827 DOI: 10.1016/J.Ccell.2019.01.004 |
0.413 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.693 |
|
| 2018 |
Skvortsova K, Iovino N, Bogdanović O. Functions and mechanisms of epigenetic inheritance in animals. Nature Reviews. Molecular Cell Biology. PMID 30425324 DOI: 10.1038/S41580-018-0074-2 |
0.539 |
|
| 2017 |
Elurbe DM, Paranjpe SS, Georgiou G, van Kruijsbergen I, Bogdanovic O, Gibeaux R, Heald R, Lister R, Huynen MA, van Heeringen SJ, Veenstra GJC. Regulatory remodeling in the allo-tetraploid frog Xenopus laevis. Genome Biology. 18: 198. PMID 29065907 DOI: 10.1186/S13059-017-1335-7 |
0.622 |
|
| 2017 |
Zenk F, Loeser E, Schiavo R, Kilpert F, Bogdanović O, Iovino N. Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition. Science (New York, N.Y.). 357: 212-216. PMID 28706074 DOI: 10.1126/Science.Aam5339 |
0.382 |
|
| 2017 |
Crisp PA, Ganguly D, Smith AB, Murray KD, Estavillo GM, Searle IR, Ford E, Bogdanović O, Lister R, Borevitz JO, Eichten SR, Pogson BJ. Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis. The Plant Cell. PMID 28705956 DOI: 10.1105/Tpc.16.00828 |
0.527 |
|
| 2017 |
Bogdanović O, Lister R. DNA methylation and the preservation of cell identity. Current Opinion in Genetics & Development. 46: 9-14. PMID 28651214 DOI: 10.1016/J.Gde.2017.06.007 |
0.719 |
|
| 2016 |
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Bogdanovic O, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/Nature19840 |
0.595 |
|
| 2016 |
Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ. Erratum: Embryonic transcription is controlled by maternally defined chromatin state. Nature Communications. 7: 12208. PMID 27378471 DOI: 10.1038/ncomms12208 |
0.584 |
|
| 2016 |
Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, et al. Active DNA demethylation at enhancers during the vertebrate phylotypic period. Nature Genetics. PMID 26928226 DOI: 10.1038/Ng.3522 |
0.735 |
|
| 2015 |
Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ. Embryonic transcription is controlled by maternally defined chromatin state. Nature Communications. 6: 10148. PMID 26679111 DOI: 10.1038/Ncomms10148 |
0.624 |
|
| 2015 |
Bogdanović O, Lister R. Of Mice and Man: Differential DNMT Dependence in Mammalian ESCs. Cell Stem Cell. 16: 459-60. PMID 25957900 DOI: 10.1016/J.Stem.2015.04.009 |
0.563 |
|
| 2012 |
Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Genome Research. 22: 2356-67. PMID 22722344 DOI: 10.1101/Gr.139725.112 |
0.38 |
|
| 2011 |
Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gómez-Skarmeta JL, Stunnenberg HG, Jones PL, Veenstra GJ. Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis. Genome Research. 21: 1313-27. PMID 21636662 DOI: 10.1101/Gr.114843.110 |
0.593 |
|
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