Ellis C. O'Neill - Related publications

Affiliations: 
University of Oxford, Oxford, United Kingdom 
Area:
Synthetic Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kuriya Y, Inoue M, Yamamoto M, Murata M, Araki M. Knowledge extraction from literatures and enzyme sequences complements FBA analysis in metabolic engineering. Biotechnology Journal. e2000443. PMID 34516717 DOI: 10.1002/biot.202000443   
2021 Jia Q, Zeng H, Li H, Xiao N, Tang J, Gao S, Zhang J, Xie W. The C-terminal loop of guanosine deaminase is essential to catalysis. Chemical Communications (Cambridge, England). PMID 34477187 DOI: 10.1039/d1cc03042f   
2021 Somma V, Calvio C, Rabuffetti M, Rama E, Speranza G, Morelli CF. An overall framework for the E. coli γ-glutamyltransferase-catalyzed transpeptidation reactions. Bioorganic Chemistry. 115: 105217. PMID 34364051 DOI: 10.1016/j.bioorg.2021.105217   
2021 Wu H, Chen Q, Zhang W, Mu W. Overview of strategies for developing high thermostability industrial enzymes: Discovery, mechanism, modification and challenges. Critical Reviews in Food Science and Nutrition. 1-18. PMID 34445912 DOI: 10.1080/10408398.2021.1970508   
2021 Li Q, Pan Y, Li H, Lenertz M, Reed K, Jordahl D, Bjerke T, Ugrinov A, Chen B, Yang Z. Cascade/Parallel Biocatalysis via Multi-enzyme Encapsulation on Metal-Organic Materials for Rapid and Sustainable Biomass Degradation. Acs Applied Materials & Interfaces. PMID 34478257 DOI: 10.1021/acsami.1c12209   
2021 Xu A, Zhang X, Wu S, Xu N, Huang Y, Yan X, Zhou J, Cui Z, Dong W. Pollutant Degrading Enzyme: Catalytic Mechanisms and Their Expanded Applications. Molecules (Basel, Switzerland). 26. PMID 34443339 DOI: 10.3390/molecules26164751   
2021 Espina G, Atalah J, Blamey JM. Extremophilic Oxidoreductases for the Industry: Five Successful Examples With Promising Projections. Frontiers in Bioengineering and Biotechnology. 9: 710035. PMID 34458243 DOI: 10.3389/fbioe.2021.710035   
2021 Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, König G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham G. Comparative performance of PETase as a function of reaction conditions, substrate properties, and product accumulation. Chemsuschem. PMID 34587366 DOI: 10.1002/cssc.202101932   
2021 Wei X, Matsuyama T, Sato H, Yan D, Chan PM, Miyamoto K, Uchiyama M, Matsuda Y. Molecular and Computational Bases for Spirofuranone Formation in Setosusin Biosynthesis. Journal of the American Chemical Society. PMID 34644070 DOI: 10.1021/jacs.1c08336   
2021 Guo J, Wang Y, Gao W, Wang X, Gao X, Man Z, Cai Z, Qing Q. Gene Cloning, Functional Expression, and Characterization of a Novel GH46 Chitosanase from Streptomyces avermitilis (SaCsn46A). Applied Biochemistry and Biotechnology. PMID 34542822 DOI: 10.1007/s12010-021-03687-6   
2021 Chen Y, Wu J, Yu D, Du X. Advances in steroidal saponins biosynthesis. Planta. 254: 91. PMID 34617240 DOI: 10.1007/s00425-021-03732-y   
2021 Gabrielli V, Muñoz-García JC, Pergolizzi G, de Andrade P, Khimyak Y, Field RA, Angulo J. Molecular recognition of natural and non-natural substrates by cellodextrin phosphorylase from Ruminiclostridium thermocellum investigated by NMR spectroscopy. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 34436794 DOI: 10.1002/chem.202102039   
2021 Kumar A, Mukhia S, Kumar R. Industrial applications of cold-adapted enzymes: challenges, innovations and future perspective. 3 Biotech. 11: 426. PMID 34567931 DOI: 10.1007/s13205-021-02929-y   
2021 Wang Y, Mittermaier AK. Characterizing Bi-substrate Enzyme Kinetics at High Resolution by 2D-ITC. Analytical Chemistry. PMID 34514786 DOI: 10.1021/acs.analchem.1c02705   
2021 Kujawa J, Głodek M, Li G, Al-Gharabli S, Knozowska K, Kujawski W. Highly effective enzymes immobilization on ceramics: Requirements for supports and enzymes. The Science of the Total Environment. 801: 149647. PMID 34467928 DOI: 10.1016/j.scitotenv.2021.149647   
2021 Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. The Enzyme Portal: an integrative tool for enzyme information and analysis. The Febs Journal. PMID 34437766 DOI: 10.1111/febs.16168   
2021 Ali A, Ellinger B, Brandt SC, Betzel C, Rühl M, Wrenger C, Schlüter H, Schäfer W, Brognaro H, Gand M. Genome and Secretome Analysis of DSM105789 Cultured on Agro-Residual and Chitinous Biomass. Microorganisms. 9. PMID 34442660 DOI: 10.3390/microorganisms9081581   
2021 Tohar R, Ansbacher T, Sher I, Afriat-Jurnou L, Weinberg E, Gal M. Screening Collagenase Activity in Bacterial Lysate for Directed Enzyme Applications. International Journal of Molecular Sciences. 22. PMID 34445258 DOI: 10.3390/ijms22168552   
2021 Bouzon M, Döring V, Dubois I, Berger A, Stoffel GMM, Calzadiaz Ramirez L, Meyer SN, Fouré M, Roche D, Perret A, Erb TJ, Bar-Even A, Lindner SN. Change in Cofactor Specificity of Oxidoreductases by Adaptive Evolution of an Escherichia coli NADPH-Auxotrophic Strain. Mbio. 12: e0032921. PMID 34399608 DOI: 10.1128/mBio.00329-21   
2021 Qian Y, Gao Z, Wang J, Wang C, Li G, Fu F, Guo J, Shan Y. Safety Evaluation and Whole Genome Sequencing of PJ01 Reveal Its Potential to Degrade Citrus Segments in Juice Processing. Foods (Basel, Switzerland). 10. PMID 34441514 DOI: 10.3390/foods10081736   
2021 Huang J, Liu Z, Bloomer BJ, Clark DS, Mukhopadhyay A, Keasling JD, Hartwig JF. Unnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzyme. Nature Chemistry. PMID 34650235 DOI: 10.1038/s41557-021-00801-3   
2021 Sunny JS, Nisha K, Natarajan A, Saleena LM. IND-enzymes: a repository for hydrolytic enzymes derived from thermophilic and psychrophilic bacterial species with potential industrial usage. Extremophiles : Life Under Extreme Conditions. 25: 319-325. PMID 33961119 DOI: 10.1007/s00792-021-01231-2   
2021 Wang Q, Zhang L. Harnessing P450 enzyme for biotechnology and synthetic biology. Chembiochem : a European Journal of Chemical Biology. PMID 34542923 DOI: 10.1002/cbic.202100439   
2021 Prasher P, Sharma M. Medicinal chemistry of pyrophosphate mimics: A mini review. Drug Development Research. PMID 34506652 DOI: 10.1002/ddr.21877   
2021 Hong K, Wang L, Johnpaul A, Lv C, Ma C. Key Enzymes Involved in the Synthesis of Hops Phytochemical Compounds: From Structure, Functions to Applications. International Journal of Molecular Sciences. 22. PMID 34502286 DOI: 10.3390/ijms22179373   
2021 Ralbovsky NM, Smith JP. Machine Learning and Chemical Imaging to Elucidate Enzyme Immobilization for Biocatalysis. Analytical Chemistry. PMID 34428014 DOI: 10.1021/acs.analchem.1c01909   
2021 Arias-Orozco P, Inklaar M, Lanooij J, Cebrián R, Kuipers OP. Functional Expression and Characterization of the Highly Promiscuous Lanthipeptide Synthetase SyncM, Enabling the Production of Lanthipeptides with a Broad Range of Ring Topologies. Acs Synthetic Biology. PMID 34554737 DOI: 10.1021/acssynbio.1c00224   
2021 Kurze E, Ruß V, Syam N, Effenberger I, Jonczyk R, Liao J, Song C, Hoffmann T, Schwab W. Glucosylation of (±)-Menthol by Uridine-Diphosphate-Sugar Dependent Glucosyltransferases from Plants. Molecules (Basel, Switzerland). 26. PMID 34576983 DOI: 10.3390/molecules26185511   
2021 Wang Z, Huang X, Liu J, Xiao F, Tian M, Ding S, Shan Y. Screening and heterologous expression of flavone synthase and flavonol synthase to catalyze hesperetin to diosmetin. Biotechnology Letters. PMID 34514540 DOI: 10.1007/s10529-021-03184-0   
2021 Liao X, Guo Y, He Y, Xiao Y, Li J, Liu R. Metabolic Enzymes Function as Epigenetic Modulators: A Trojan Horse for Chromatin Regulation and Gene Expression. Pharmacological Research. 105834. PMID 34450321 DOI: 10.1016/j.phrs.2021.105834   
2021 Hamdan SH, Maiangwa J, Ali MSM, Normi YM, Sabri S, Leow TC. Thermostable lipases and their dynamics of improved enzymatic properties. Applied Microbiology and Biotechnology. PMID 34487207 DOI: 10.1007/s00253-021-11520-7   
2021 Feller FM, Richtsmeier P, Wege M, Philipp B. Comparative analysis of bile-salt degradation in sp. strain Chol11 and Chol1 reveals functional diversity of proteobacterial steroid degradation enzymes and suggests a novel pathway for side-chain degradation. Applied and Environmental Microbiology. AEM0145321. PMID 34469190 DOI: 10.1128/AEM.01453-21   
2021 Thompson NK, LeClaire L, Rodriguez Perez S, Wakarchuk W. Investigation of sequon engineering for improved O-glycosylation by the human polypeptide N-acetylgalactosaminyl transferase T2 isozyme and two orthologues. The Biochemical Journal. PMID 34523671 DOI: 10.1042/BCJ20210382   
2021 Wang J, Anderson K, Yang E, He L, Lidstrom ME. Enzyme engineering and testing of a formate reduction pathway. Synthetic Biology (Oxford, England). 6: ysab020. PMID 34651085 DOI: 10.1093/synbio/ysab020   
2021 Ferretti MV, Hussien RA, Ballicora MA, Iglesias AA, Figueroa CM, Asencion Diez MD. The ADP-glucose pyrophosphorylase from Melainabacteria: A comparative study between photosynthetic and non-photosynthetic bacterial sources. Biochimie. PMID 34560201 DOI: 10.1016/j.biochi.2021.09.011   
2021 Gilboa T, Ogata AF, Walt DR. Single-Molecule Enzymology for Diagnostics: Profiling Alkaline Phosphatase Activity in Clinical Samples. Chembiochem : a European Journal of Chemical Biology. PMID 34375495 DOI: 10.1002/cbic.202100358   
2021 Li T, Gao YZ, Xu J, Zhang ST, Guo Y, Spain JC, Zhou NY. A Recently Assembled Degradation Pathway for 2,3-Dichloronitrobenzene in sp. Strain JS3051. Mbio. e0223121. PMID 34425699 DOI: 10.1128/mBio.02231-21   
2021 Colás-Ruiz NR, Ramirez G, Courant F, Gomez E, Hampel M, Lara-Martín PA. Multi-omic approach to evaluate the response of gilt-head sea bream (Sparus aurata) exposed to the UV filter sulisobenzone. The Science of the Total Environment. 803: 150080. PMID 34525742 DOI: 10.1016/j.scitotenv.2021.150080   
2021 Wang Y, Hanrahan G, Azar FA, Mittermaier A. Binding interactions in a kinase active site modulate background ATP hydrolysis. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140720. PMID 34597835 DOI: 10.1016/j.bbapap.2021.140720   
2021 Linz AM, Ma Y, Perez JM, Myers KS, Kontur WS, Noguera DR, Donohue TJ. Aromatic dimer dehydrogenases from reduce monoaromatic diketones. Applied and Environmental Microbiology. AEM0174221. PMID 34613756 DOI: 10.1128/AEM.01742-21   
2021 Ren S, Cheng X, Ma L. Identification of methionine adenosyltransferase with high diastereoselectivity for biocatalytic synthesis of (S)-S-adenosyl-l-methionine and exploring its relationship with fluorinated biosynthetic pathway. Enzyme and Microbial Technology. 150: 109881. PMID 34489034 DOI: 10.1016/j.enzmictec.2021.109881   
2021 Washburn LA, Nepal KK, Watanabe CMH. A Capture Strategy for the Identification of Thio-Templated Metabolites. Acs Chemical Biology. PMID 34423966 DOI: 10.1021/acschembio.1c00437   
2021 Pareek V, Sha Z, He J, Wingreen NS, Benkovic SJ. Metabolic channeling: predictions, deductions, and evidence. Molecular Cell. 81: 3775-3785. PMID 34547238 DOI: 10.1016/j.molcel.2021.08.030   
2021 Xia Y, Cheng Q, Mu W, Hu X, Sun Z, Qiu Y, Liu X, Wang Z. Research Advances of d-allulose: An Overview of Physiological Functions, Enzymatic Biotransformation Technologies, and Production Processes. Foods (Basel, Switzerland). 10. PMID 34574296 DOI: 10.3390/foods10092186   
2021 Morzywolek A, Plotka M, Kaczorowska AK, Szadkowska M, Kozlowski LP, Wyrzykowski D, Makowska J, Waters JJ, Swift SM, Donovan DM, Kaczorowski T. Novel Lytic Enzyme of Prophage Origin from E3 Strain Alaska E43 with Bactericidal Activity against Clostridial Cells. International Journal of Molecular Sciences. 22. PMID 34502443 DOI: 10.3390/ijms22179536   
2021 Currie MJ, Manjunath L, Horne CR, Rendle PM, Subramanian R, Friemann R, Fairbanks AJ, Muscroft-Taylor AC, North RA, Dobson RCJ. N-Acetylmannosamine-6-phosphate 2-epimerase uses a novel substrate-assisted mechanism to catalyze amino sugar epimerization. The Journal of Biological Chemistry. 101113. PMID 34437902 DOI: 10.1016/j.jbc.2021.101113   
2021 Becker D, Bharatam PV, Gohlke H. F/G Region Rigidity is Inversely Correlated to Substrate Promiscuity of Human CYP Isoforms Involved in Metabolism. Journal of Chemical Information and Modeling. 61: 4023-4030. PMID 34370479 DOI: 10.1021/acs.jcim.1c00558   
2021 Desta M, Zhang L, Wang W, Xu P, Tang H. Molecular mechanisms and biochemical analysis of fluorene degradation by the sp. SMT-1 strain. 3 Biotech. 11: 416. PMID 34485009 DOI: 10.1007/s13205-021-02946-x   
2021 Eusebio N, Rego A, Glasser NR, Castelo-Branco R, Balskus EP, Leão PN. Distribution and diversity of dimetal-carboxylate halogenases in cyanobacteria. Bmc Genomics. 22: 633. PMID 34461836 DOI: 10.1186/s12864-021-07939-x   
2021 Zhang Z, Shah AM, Mohamed H, Tsiklauri N, Song Y. Isolation and Screening of Microorganisms for the Effective Pretreatment of Lignocellulosic Agricultural Wastes. Biomed Research International. 2021: 5514745. PMID 34604384 DOI: 10.1155/2021/5514745