Jonas Korlach - Publications

Affiliations: 
2003 Cornell University, Ithaca, NY, United States 

100 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Duncan T, Kingan SB, Lambert CC, Baybayan P, Korlach J. A Low DNA Input Protocol for High-Quality PacBio De Novo Genome Assemblies. Journal of Biomolecular Techniques : Jbt. 30: S1-S2. PMID 31885515  0.317
2019 Kingan SB, Urban J, Lambert CC, Baybayan P, Childers AK, Coates B, Scheffler B, Hackett K, Korlach J, Geib SM. A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system. Gigascience. 8. PMID 31609423 DOI: 10.1093/Gigascience/Giz122  0.375
2019 Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, ... ... Korlach J, et al. Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature Communications. 10: 1784. PMID 30992455 DOI: 10.1038/S41467-018-08148-Z  0.383
2019 Kingan SB, Heaton H, Cudini J, Lambert CC, Baybayan P, Galvin BD, Durbin R, Korlach J, Lawniczak MKN. A High-Quality Genome Assembly from a Single Mosquito Using PacBio Sequencing. Genes. 10. PMID 30669388 DOI: 10.3390/Genes10010062  0.424
2019 Jadhav VS, Hoogerheide DP, Korlach J, Wanunu M. Porous Zero-Mode Waveguides for Picogram-Level DNA Sequencing Biophysical Journal. 116: 32a. DOI: 10.1016/J.Bpj.2018.11.216  0.329
2018 Jadhav V, Hoogerheide DP, Korlach J, Wanunu M. Porous Zero-Mode Waveguides for Picogram-Level DNA Capture. Nano Letters. PMID 30484321 DOI: 10.1021/Acs.Nanolett.8B04170  0.36
2018 Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, ... ... Korlach J, et al. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. PMID 30429615 DOI: 10.1038/S41586-018-0692-Z  0.321
2018 Nguyen TT, Suryamohan K, Kuriakose B, Janakiraman V, Reichelt M, Chaudhuri S, Guillory J, Divakaran N, Rabins PE, Goel R, Deka B, Sarkar S, Ekka P, Tsai YC, Vargas D, ... ... Korlach J, et al. Author Correction: Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus. Scientific Reports. 8: 13274. PMID 30171192 DOI: 10.1038/S41598-018-31454-X  0.334
2018 Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA. A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. Genes. 9. PMID 30071683 DOI: 10.3390/Genes9080393  0.34
2018 Nguyen TT, Suryamohan K, Kuriakose B, Janakiraman V, Reichelt M, Chaudhuri S, Guillory J, Divakaran N, Rabins PE, Goel R, Deka B, Sarkar S, Ekka P, Tsai YC, Vargas D, ... ... Korlach J, et al. Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus. Scientific Reports. 8: 8924. PMID 29895987 DOI: 10.1038/S41598-018-27084-Y  0.388
2018 Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, et al. Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data. Genome Research. 28: 144. PMID 29295848 DOI: 10.1101/Gr.233007.117  0.354
2017 Hemadou A, Giudicelli V, Smith ML, Lefranc MP, Duroux P, Kossida S, Heiner C, Hepler NL, Kuijpers J, Groppi A, Korlach J, Mondon P, Ottones F, Jacobin-Valat MJ, Laroche-Traineau J, et al. Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library. Frontiers in Immunology. 8: 1796. PMID 29326697 DOI: 10.3389/Fimmu.2017.01796  0.38
2017 Srikhanta YN, Gorrell RJ, Power PM, Tsyganov K, Boitano M, Clark TA, Korlach J, Hartland EL, Jennings MP, Kwok T. Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori. Scientific Reports. 7: 16140. PMID 29170397 DOI: 10.1038/S41598-017-15721-X  0.315
2017 Korlach J, Gedman G, Kingan SB, Chin CS, Howard JT, Audet JN, Cantin L, Jarvis ED. De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads. Gigascience. 6: 1-16. PMID 29020750 DOI: 10.1093/Gigascience/Gix085  0.393
2017 Larkin J, Henley RY, Jadhav V, Korlach J, Wanunu M. Length-independent DNA packing into nanopore zero-mode waveguides for low-input DNA sequencing. Nature Nanotechnology. PMID 28892102 DOI: 10.1038/Nnano.2017.176  0.386
2017 Merker JD, Wenger AM, Sneddon T, Grove M, Zappala Z, Fresard L, Waggott D, Utiramerur S, Hou Y, Smith KS, Montgomery SB, Wheeler M, Buchan JG, Lambert CC, Eng KS, ... ... Korlach J, et al. Long-read genome sequencing identifies causal structural variation in a Mendelian disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 28640241 DOI: 10.1038/Gim.2017.86  0.369
2017 Tan A, Blakeway LV, Bakaletz LO, Boitano M, Clark TA, Korlach J, Jennings MP, Peak IR, Seib KL. Complete Genome Sequence of Moraxella catarrhalis Strain CCRI-195ME, Isolated from the Middle Ear. Genome Announcements. 5. PMID 28546484 DOI: 10.1128/Genomea.00384-17  0.352
2017 Kong N, Ng W, Thao K, Agulto R, Weis A, Kim KS, Korlach J, Hickey L, Kelly L, Lappin S, Weimer BC. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing. Standards in Genomic Sciences. 12: 27. PMID 28344744 DOI: 10.1186/S40793-017-0239-1  0.433
2017 Doberenz S, Eckweiler D, Reichert O, Jensen V, Bunk B, Spröer C, Kordes A, Frangipani E, Luong K, Korlach J, Heeb S, Overmann J, Kaever V, Häussler S. Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles. Mbio. 8. PMID 28223461 DOI: 10.1128/Mbio.02312-16  0.376
2016 Huddleston J, Chaisson MJ, Meltz Steinberg K, Warren W, Hoekzema K, Gordon DS, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, et al. Discovery and genotyping of structural variation from long-read haploid genome sequence data. Genome Research. PMID 27895111 DOI: 10.1101/Gr.214007.116  0.386
2016 Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer BC. Comparative Genomics Reveal the Diversity of Restriction Methylation Systems in Listeria monocytogenes. Applied and Environmental Microbiology. PMID 27836852 DOI: 10.1128/Aem.02091-16  0.371
2016 Seo JS, Rhie A, Kim J, Lee S, Sohn MH, Kim CU, Hastie A, Cao H, Yun JY, Kim J, Kuk J, Park GH, Kim J, Ryu H, Kim J, ... ... Korlach J, et al. De novo assembly and phasing of a Korean human genome. Nature. PMID 27706134 DOI: 10.1038/Nature20098  0.405
2016 Suzuki Y, Korlach J, Turner SW, Tsukahara T, Taniguchi J, Qu W, Ichikawa K, Yoshimura J, Yurino H, Takahashi Y, Mitsui J, Ishiura H, Tsuji S, Takeda H, Morishita S. AgIn: Measuring the Landscape of CpG Methylation of Individual Repetitive Elements. Bioinformatics (Oxford, England). PMID 27318202 DOI: 10.1093/Bioinformatics/Btw360  0.398
2016 Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, ... ... Korlach J, et al. Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. Plos Genetics. 12: e1005954. PMID 27082250 DOI: 10.1371/Journal.Pgen.1005954  0.345
2016 Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, ... ... Korlach J, et al. The Epigenomic Landscape of Prokaryotes. Plos Genetics. 12: e1005854. PMID 26870957 DOI: 10.1371/Journal.Pgen.1005854  0.383
2016 Tsai YC, Conlan S, Deming C, Segre JA, Kong HH, Korlach J, Oh J. Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing. Mbio. 7. PMID 26861018 DOI: 10.1128/Mbio.01948-15  0.388
2016 Weirather JL, Clark TA, Tseng E, Korlach J, Au KF. Abstract 5289: Enhance both precision and sensitivity of fusion gene detection by hybrid sequencing Cancer Research. 76: 5289-5289. DOI: 10.1158/1538-7445.Am2016-5289  0.314
2016 Sobek J, Rehrauer H, Schauer S, Fischer D, Patrignani A, Landgraf S, Korlach J, Schlapbach R. Single-molecule DNA hybridisation studied by using a modified DNA sequencer: a comparison with surface plasmon resonance data Methods and Applications in Fluorescence. 4: 15002. DOI: 10.1088/2050-6120/4/1/015002  0.373
2016 Larkin J, Henley RY, Korlach J, Wanunu M. Nanopore Zero-Mode Waveguides for DNA Sequencing and Beyond Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.2837  0.42
2015 Mariita RM, Bhatnagar S, Hanselmann K, Hossain MJ, Korlach J, Boitano M, Roberts RJ, Liles MR, Moss AG, Leadbetter JR, Newman DK, Dawson SC. Complete Genome Sequence of Streptomyces sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts. Genome Announcements. 3. PMID 26722012 DOI: 10.1128/Genomea.01506-15  0.345
2015 Mariita RM, Bhatnagar S, Hanselmann K, Hossain MJ, Korlach J, Boitano M, Roberts RJ, Liles MR, Moss AG, Leadbetter JR, Newman DK, Dawson SC. Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts. Genome Announcements. 3. PMID 26722011 DOI: 10.1128/Genomea.01504-15  0.313
2015 Sater MR, Lamelas A, Wang G, Clark TA, Röltgen K, Mane S, Korlach J, Pluschke G, Schmid CD. DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates. Plos One. 10: e0144612. PMID 26656597 DOI: 10.1371/Journal.Pone.0144612  0.401
2015 Atack JM, Srikhanta YN, Fox KL, Jurcisek JA, Brockman KL, Clark TA, Boitano M, Power PM, Jen FE, McEwan AG, Grimmond SM, Smith AL, Barenkamp SJ, Korlach J, Bakaletz LO, et al. A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae. Nature Communications. 6: 7828. PMID 26215614 DOI: 10.1038/Ncomms8828  0.315
2015 Eutsey RA, Powell E, Dordel J, Salter SJ, Clark TA, Korlach J, Ehrlich GD, Hiller NL. Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System. Mbio. 6. PMID 26081630 DOI: 10.1128/Mbio.00173-15  0.356
2015 Pirone-Davies C, Hoffmann M, Roberts RJ, Muruvanda T, Timme RE, Strain E, Luo Y, Payne J, Luong K, Song Y, Tsai YC, Boitano M, Clark TA, Korlach J, Evans PS, et al. Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars. Plos One. 10: e0123639. PMID 25860355 DOI: 10.1371/Journal.Pone.0123639  0.394
2015 Seib KL, Jen FE, Tan A, Scott AL, Kumar R, Power PM, Chen LT, Wu HJ, Wang AH, Hill DM, Luyten YA, Morgan RD, Roberts RJ, Maiden MC, Boitano M, ... ... Korlach J, et al. Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis. Nucleic Acids Research. 43: 4150-62. PMID 25845594 DOI: 10.1093/Nar/Gkv219  0.357
2015 Gaulton T, Misra R, Rose G, Baybayan P, Hall R, Freeman J, Turton J, Picton S, Korlach J, Gharbia S, Shah H. Complete Genome Sequence of the Hypervirulent Bacterium Clostridium difficile Strain G46, Ribotype 027. Genome Announcements. 3. PMID 25814591 DOI: 10.1128/Genomea.00073-15  0.33
2015 Genest PA, Baugh L, Taipale A, Zhao W, Jan S, van Luenen HG, Korlach J, Clark T, Luong K, Boitano M, Turner S, Myler PJ, Borst P. Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing. Nucleic Acids Research. 43: 2102-15. PMID 25662217 DOI: 10.1093/Nar/Gkv095  0.39
2015 Chaisson MJ, Huddleston J, Dennis MY, Sudmant PH, Malig M, Hormozdiari F, Antonacci F, Surti U, Sandstrom R, Boitano M, Landolin JM, Stamatoyannopoulos JA, Hunkapiller MW, Korlach J, Eichler EE. Resolving the complexity of the human genome using single-molecule sequencing. Nature. 517: 608-11. PMID 25383537 DOI: 10.1038/Nature13907  0.421
2015 Larkin JW, Foquet M, Turner SW, Korlach J, Wanunu M. Nanopore-Enhanced Positioning of Molecules in Zero-Mode Waveguides Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.1795  0.365
2014 Korlach J. Returning to more finished genomes. Genomics Data. 2: 46-8. PMID 26484068 DOI: 10.1016/J.Gdata.2014.02.003  0.396
2014 Conlan S, Deming C, Tsai YC, Lau AF, Dekker JP, Korlach J, Segre JA. Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci. Genome Announcements. 2. PMID 25540345 DOI: 10.1128/Genomea.01332-14  0.31
2014 Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC. Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus. Plos One. 9: e114551. PMID 25479613 DOI: 10.1371/Journal.Pone.0114551  0.34
2014 Chavez L, Huang Y, Luong K, Agarwal S, Iyer LM, Pastor WA, Hench VK, Frazier-Bowers SA, Korol E, Liu S, Tahiliani M, Wang Y, Clark TA, Korlach J, Pukkila PJ, et al. Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea. Proceedings of the National Academy of Sciences of the United States of America. 111: E5149-58. PMID 25406324 DOI: 10.1073/Pnas.1419513111  0.341
2014 Miller WG, Yee E, Chapman MH, Smith TP, Bono JL, Huynh S, Parker CT, Vandamme P, Luong K, Korlach J. Comparative genomics of the Campylobacter lari group. Genome Biology and Evolution. 6: 3252-66. PMID 25381664 DOI: 10.1093/Gbe/Evu249  0.314
2014 Hoffmann M, Muruvanda T, Pirone C, Korlach J, Timme R, Payne J, Evans P, Meng J, Brown EW, Allard MW. First Fully Closed Genome Sequence of Salmonella enterica subsp. enterica Serovar Cubana Associated with a Food-Borne Outbreak. Genome Announcements. 2. PMID 25359917 DOI: 10.1128/Genomea.01112-14  0.404
2014 Manso AS, Chai MH, Atack JM, Furi L, De Ste Croix M, Haigh R, Trappetti C, Ogunniyi AD, Shewell LK, Boitano M, Clark TA, Korlach J, Blades M, Mirkes E, Gorban AN, et al. A random six-phase switch regulates pneumococcal virulence via global epigenetic changes. Nature Communications. 5: 5055. PMID 25268848 DOI: 10.1038/Ncomms6055  0.318
2014 Conlan S, Thomas PJ, Deming C, Park M, Lau AF, Dekker JP, Snitkin ES, Clark TA, Luong K, Song Y, Tsai YC, Boitano M, Dayal J, Brooks SY, Schmidt B, ... ... Korlach J, et al. Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae. Science Translational Medicine. 6: 254ra126. PMID 25232178 DOI: 10.1126/Scitranslmed.3009845  0.31
2014 Blakeway LV, Power PM, Jen FE, Worboys SR, Boitano M, Clark TA, Korlach J, Bakaletz LO, Jennings MP, Peak IR, Seib KL. ModM DNA methyltransferase methylome analysis reveals a potential role for Moraxella catarrhalis phasevarions in otitis media. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 5197-207. PMID 25183669 DOI: 10.1096/Fj.14-256578  0.367
2014 Doi Y, Hazen TH, Boitano M, Tsai YC, Clark TA, Korlach J, Rasko DA. Whole-genome assembly of Klebsiella pneumoniae coproducing NDM-1 and OXA-232 carbapenemases using single-molecule, real-time sequencing. Antimicrobial Agents and Chemotherapy. 58: 5947-53. PMID 25070096 DOI: 10.1128/Aac.03180-14  0.4
2014 Mosher JJ, Bowman B, Bernberg EL, Shevchenko O, Kan J, Korlach J, Kaplan LA. Improved performance of the PacBio SMRT technology for 16S rDNA sequencing. Journal of Microbiological Methods. 104: 59-60. PMID 24978594 DOI: 10.1016/J.Mimet.2014.06.012  0.339
2014 Cao B, Chen C, DeMott MS, Cheng Q, Clark TA, Xiong X, Zheng X, Butty V, Levine SS, Yuan G, Boitano M, Luong K, Song Y, Zhou X, Deng Z, ... ... Korlach J, et al. Genomic mapping of phosphorothioates reveals partial modification of short consensus sequences. Nature Communications. 5: 3951. PMID 24899568 DOI: 10.1038/Ncomms4951  0.356
2014 Debruyn JM, Radosevich M, Wommack KE, Polson SW, Hauser LJ, Fawaz MN, Korlach J, Tsai YC. Genome Sequence and Methylome of Soil Bacterium Gemmatirosa kalamazoonensis KBS708T, a Member of the Rarely Cultivated Gemmatimonadetes Phylum. Genome Announcements. 2. PMID 24699952 DOI: 10.1128/Genomea.00226-14  0.336
2014 Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP. Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever. Genome Announcements. 2. PMID 24526647 DOI: 10.1128/Genomea.00084-14  0.348
2014 Huddleston J, Ranade S, Malig M, Antonacci F, Chaisson M, Hon L, Sudmant PH, Graves TA, Alkan C, Dennis MY, Wilson RK, Turner SW, Korlach J, Eichler EE. Reconstructing complex regions of genomes using long-read sequencing technology. Genome Research. 24: 688-96. PMID 24418700 DOI: 10.1101/Gr.168450.113  0.397
2014 Krebes J, Morgan RD, Bunk B, Spröer C, Luong K, Parusel R, Anton BP, König C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S. The complex methylome of the human gastric pathogen Helicobacter pylori. Nucleic Acids Research. 42: 2415-32. PMID 24302578 DOI: 10.1093/Nar/Gkt1201  0.327
2013 Hoffmann M, Muruvanda T, Allard MW, Korlach J, Roberts RJ, Timme R, Payne J, McDermott PF, Evans P, Meng J, Brown EW, Zhao S. Complete Genome Sequence of a Multidrug-Resistant Salmonella enterica Serovar Typhimurium var. 5- Strain Isolated from Chicken Breast. Genome Announcements. 1. PMID 24356834 DOI: 10.1128/Genomea.01068-13  0.33
2013 Kozdon JB, Melfi MD, Luong K, Clark TA, Boitano M, Wang S, Zhou B, Gonzalez D, Collier J, Turner SW, Korlach J, Shapiro L, McAdams HH. Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle. Proceedings of the National Academy of Sciences of the United States of America. 110: E4658-67. PMID 24218615 DOI: 10.1073/Pnas.1319315110  0.323
2013 Bendall ML, Luong K, Wetmore KM, Blow M, Korlach J, Deutschbauer A, Malmstrom RR. Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. Journal of Bacteriology. 195: 4966-74. PMID 23995632 DOI: 10.1128/Jb.00935-13  0.381
2013 Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nature Methods. 10: 563-9. PMID 23644548 DOI: 10.1038/Nmeth.2474  0.413
2013 Vilfan ID, Tsai YC, Clark TA, Wegener J, Dai Q, Yi C, Pan T, Turner SW, Korlach J. Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription. Journal of Nanobiotechnology. 11: 8. PMID 23552456 DOI: 10.1186/1477-3155-11-8  0.336
2013 Feng Z, Fang G, Korlach J, Clark T, Luong K, Zhang X, Wong W, Schadt E. Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic. Plos Computational Biology. 9: e1002935. PMID 23516341 DOI: 10.1371/Journal.Pcbi.1002935  0.394
2013 Allard MW, Muruvanda T, Strain E, Timme R, Luo Y, Wang C, Keys CE, Payne J, Cooper T, Luong K, Song Y, Chin CS, Korlach J, Roberts RJ, Evans P, et al. Fully assembled genome sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992. Genome Announcements. 1: e0008113. PMID 23516208 DOI: 10.1128/Genomea.00081-13  0.358
2013 Elting MW, Leslie SR, Churchman LS, Korlach J, McFaul CM, Leith JS, Levene MJ, Cohen AE, Spudich JA. Single-molecule fluorescence imaging of processive myosin with enhanced background suppression using linear zero-mode waveguides (ZMWs) and convex lens induced confinement (CLIC). Optics Express. 21: 1189-202. PMID 23389011 DOI: 10.1364/Oe.21.001189  0.333
2013 Clark TA, Lu X, Luong K, Dai Q, Boitano M, Turner SW, He C, Korlach J. Enhanced 5-methylcytosine detection in single-molecule, real-time sequencing via Tet1 oxidation. Bmc Biology. 11: 4. PMID 23339471 DOI: 10.1186/1741-7007-11-4  0.399
2013 Lluch-Senar M, Luong K, Lloréns-Rico V, Delgado J, Fang G, Spittle K, Clark TA, Schadt E, Turner SW, Korlach J, Serrano L. Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution. Plos Genetics. 9: e1003191. PMID 23300489 DOI: 10.1371/Journal.Pgen.1003191  0.393
2013 Schadt EE, Banerjee O, Fang G, Feng Z, Wong WH, Zhang X, Kislyuk A, Clark TA, Luong K, Keren-Paz A, Chess A, Kumar V, Chen-Plotkin A, Sondheimer N, Korlach J, et al. Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases. Genome Research. 23: 129-41. PMID 23093720 DOI: 10.1101/Gr.136739.111  0.43
2013 Larkin J, Foquet M, Korlach J, Wanunu M. 207 Nanopore immobilization of DNA polymerase enhances single-molecule sequencing Journal of Biomolecular Structure & Dynamics. 31: 134-135. DOI: 10.1080/07391102.2013.786450  0.408
2013 Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, Feng Z, Losic B, Mahajan MC, Jabado OJ, Deikus G, Clark TA, Luong K, Murray IA, Davis BM, ... ... Korlach J, et al. Erratum: Corrigendum: Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing Nature Biotechnology. 31: 566-566. DOI: 10.1038/Nbt0613-565F  0.355
2013 Tsai A, Chen J, Kornberg G, Korlach J, Uemura S, Puglisi J. Observing Prokaryotic Translation Elongation in Real-Time using Single-Molecule Fluorescence Biophysical Journal. 104: 257a. DOI: 10.1016/J.Bpj.2012.11.1445  0.357
2012 Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology. 194: 6670-1. PMID 23144412 DOI: 10.1128/Jb.01765-12  0.325
2012 Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, Feng Z, Losic B, Mahajan MC, Jabado OJ, Deikus G, Clark TA, Luong K, Murray IA, Davis BM, ... ... Korlach J, et al. Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing. Nature Biotechnology. 30: 1232-9. PMID 23138224 DOI: 10.1038/Nbt.2432  0.442
2012 Saletore Y, Meyer K, Korlach J, Vilfan ID, Jaffrey S, Mason CE. The birth of the Epitranscriptome: deciphering the function of RNA modifications. Genome Biology. 13: 175. PMID 23113984 DOI: 10.1186/Gb-2012-13-10-175  0.313
2012 Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, Fomenkov A, Turner SW, Korlach J, Roberts RJ. The methylomes of six bacteria. Nucleic Acids Research. 40: 11450-62. PMID 23034806 DOI: 10.1093/Nar/Gks891  0.391
2012 Korlach J, Turner SW. Going beyond five bases in DNA sequencing. Current Opinion in Structural Biology. 22: 251-61. PMID 22575758 DOI: 10.1016/J.Sbi.2012.04.002  0.423
2012 Clark TA, Murray IA, Morgan RD, Kislyuk AO, Spittle KE, Boitano M, Fomenkov A, Roberts RJ, Korlach J. Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing. Nucleic Acids Research. 40: e29. PMID 22156058 DOI: 10.1093/Nar/Gkr1146  0.43
2012 Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, He C, Korlach J. Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine. Nature Methods. 9: 75-7. PMID 22101853 DOI: 10.1038/Nmeth.1779  0.455
2012 Korlach J. Single molecule, real-time DNA sequencing yields a clearer picture of biological complexity: Helps scientists close genomes, study linked variants, and detect base modifications Industrial Biotechnology. 8: 333-336. DOI: 10.1089/ind.2012.1546  0.344
2011 Clark TA, Spittle KE, Turner SW, Korlach J. Direct detection and sequencing of damaged DNA bases. Genome Integrity. 2: 10. PMID 22185597 DOI: 10.1186/2041-9414-2-10  0.368
2011 Revyakin A, Zhang Z, Coleman R, Tsai Y, Li Y, Ryul Park S, Pertsinidis A, Lucas J, Korlach J, Chu S, Tjian R. Assembly and Regulation of the Human RNA Polymerase II Preinitiation Complex: A Single-Molecule Approach to a Complex Biological System Biophysical Journal. 100: 10a. DOI: 10.1016/J.Bpj.2010.12.263  0.331
2011 Kellinger MW, Korlach J, Johnson KA. DNA Translocation Dynamics of HIV Reverse Transcriptase Revealed Through Single Molecule Kinetics of Nucleotide Binding Biophysical Journal. 100: 193a. DOI: 10.1016/J.Bpj.2010.12.1270  0.37
2010 Korlach J, Bjornson KP, Chaudhuri BP, Cicero RL, Flusberg BA, Gray JJ, Holden D, Saxena R, Wegener J, Turner SW. Real-time DNA sequencing from single polymerase molecules. Methods in Enzymology. 472: 431-55. PMID 20580975 DOI: 10.1016/S0076-6879(10)72001-2  0.435
2010 Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, Clark TA, Korlach J, Turner SW. Direct detection of DNA methylation during single-molecule, real-time sequencing. Nature Methods. 7: 461-5. PMID 20453866 DOI: 10.1038/Nmeth.1459  0.468
2010 Uemura S, Aitken CE, Korlach J, Flusberg BA, Turner SW, Puglisi JD. Real-time tRNA transit on single translating ribosomes at codon resolution. Nature. 464: 1012-7. PMID 20393556 DOI: 10.1038/Nature08925  0.319
2010 Flusberg B, Webster D, Travers K, Olivares E, Korlach J, Turner S. Abstract 1154: Direct detection of DNA methylation and mutagenic damage through single-molecule, real-time (SMRTTM) DNA sequencing Cancer Research. 70: 1154-1154. DOI: 10.1158/1538-7445.Am10-1154  0.415
2010 Uemura S, Korlach J, Flusberg B, Turner S, Puglisi JD. Realtime Observation of tRNA Dynamics at High Concentrations in Single Molecule Translation Biophysical Journal. 98: 260a-261a. DOI: 10.1016/J.Bpj.2009.12.1419  0.338
2009 Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, ... ... Korlach J, et al. Real-time DNA sequencing from single polymerase molecules. Science (New York, N.Y.). 323: 133-8. PMID 19023044 DOI: 10.1126/Science.1162986  0.449
2009 Korlach J. Real-time DNA Synthesis Dynamics Of Single f29 DNA Polymerase Molecules With Base Pair Resolution Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3656  0.395
2008 Korlach J, Bibillo A, Wegener J, Peluso P, Pham TT, Park I, Clark S, Otto GA, Turner SW. Long, processive enzymatic DNA synthesis using 100% dye-labeled terminal phosphate-linked nucleotides. Nucleosides, Nucleotides & Nucleic Acids. 27: 1072-83. PMID 18711669 DOI: 10.1080/15257770802260741  0.398
2008 Korlach J, Marks PJ, Cicero RL, Gray JJ, Murphy DL, Roitman DB, Pham TT, Otto GA, Foquet M, Turner SW. Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures. Proceedings of the National Academy of Sciences of the United States of America. 105: 1176-81. PMID 18216253 DOI: 10.1073/Pnas.0710982105  0.395
2008 Park HY, Kim SA, Korlach J, Rhoades E, Kwok LW, Zipfel WR, Waxham MN, Webb WW, Pollack L. Conformational changes of calmodulin upon Ca2+ binding studied with a microfluidic mixer. Proceedings of the National Academy of Sciences of the United States of America. 105: 542-7. PMID 18178620 DOI: 10.1073/Pnas.0710810105  0.702
2006 Park HY, Qiu X, Rhoades E, Korlach J, Kwok LW, Zipfel WR, Webb WW, Pollack L. Achieving uniform mixing in a microfluidic device: hydrodynamic focusing prior to mixing. Analytical Chemistry. 78: 4465-73. PMID 16808455 DOI: 10.1021/Ac060572N  0.712
2005 Korlach J, Reichle C, Müller T, Schnelle T, Webb WW. Trapping, deformation, and rotation of giant unilamellar vesicles in octode dielectrophoretic field cages. Biophysical Journal. 89: 554-62. PMID 15863477 DOI: 10.1529/Biophysj.104.050401  0.476
2005 Korlach J, Baumgart T, Webb WW, Feigenson GW. Detection of motional heterogeneities in lipid bilayer membranes by dual probe fluorescence correlation spectroscopy. Biochimica Et Biophysica Acta. 1668: 158-63. PMID 15737326 DOI: 10.1016/J.Bbamem.2004.11.016  0.644
2004 Foquet M, Korlach J, Zipfel WR, Webb WW, Craighead HG. Focal volume confinement by submicrometer-sized fluidic channels. Analytical Chemistry. 76: 1618-26. PMID 15018559 DOI: 10.1021/Ac035088O  0.663
2004 Korlach J, Baird DW, Heikal AA, Gee KR, Hoffman GR, Webb WW. Spontaneous nucleotide exchange in low molecular weight GTPases by fluorescently labeled gamma-phosphate-linked GTP analogs. Proceedings of the National Academy of Sciences of the United States of America. 101: 2800-5. PMID 14973186 DOI: 10.1073/Pnas.0308579100  0.508
2003 Levene MJ, Korlach J, Turner SW, Foquet M, Craighead HG, Webb WW. Zero-mode waveguides for single-molecule analysis at high concentrations. Science (New York, N.Y.). 299: 682-6. PMID 12560545 DOI: 10.1126/Science.1079700  0.509
2002 Foquet M, Korlach J, Zipfel W, Webb WW, Craighead HG. DNA fragment sizing by single molecule detection in submicrometer-sized closed fluidic channels. Analytical Chemistry. 74: 1415-22. PMID 11922312 DOI: 10.1021/Ac011076W  0.669
1999 Korlach J, Schwille P, Webb WW, Feigenson GW. Characterization of lipid bilayer phases by confocal microscopy and fluorescence correlation spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 96: 8461-6. PMID 10411897 DOI: 10.1073/Pnas.96.15.8461  0.586
1999 Schwille P, Korlach J, Webb WW. Fluorescence correlation spectroscopy with single-molecule sensitivity on cell and model membranes. Cytometry. 36: 176-82. PMID 10404965 DOI: 10.1002/(Sici)1097-0320(19990701)36:3<176::Aid-Cyto5>3.0.Co;2-F  0.613
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