Daniel Robert Larson - Publications

Affiliations: 
2004 Cornell University, Ithaca, NY, United States 

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Donovan BT, Huynh A, Ball DA, Patel HP, Poirier MG, Larson DR, Ferguson ML, Lenstra TL. Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting. The Embo Journal. PMID 31101674 DOI: 10.15252/embj.2018100809  0.8
2019 Palangat M, Anastasakis DG, Fei DL, Lindblad KE, Bradley R, Hourigan CS, Hafner M, Larson DR. The splicing factor U2AF1 contributes to cancer progression through a noncanonical role in translation regulation. Genes & Development. PMID 30842218 DOI: 10.1101/gad.319590.118  0.48
2018 Rodriguez J, Ren G, Day CR, Zhao K, Chow CC, Larson DR. Intrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity. Cell. PMID 30554876 DOI: 10.1016/j.cell.2018.11.026  0.48
2016 Palangat M, Larson DR. Single-Gene Dual-Color Reporter Cell Line to Analyze RNA Synthesis in vivo. Methods (San Diego, Calif.). PMID 27068658 DOI: 10.1016/j.ymeth.2016.04.009  0.48
2015 Day CR, Chen H, Coulon A, Meier JL, Larson DR. High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics. Methods (San Diego, Calif.). PMID 26655523 DOI: 10.1016/j.ymeth.2015.11.025  1
2015 Lenstra TL, Coulon A, Chow CC, Larson DR. Single-Molecule Imaging Reveals a Switch between Spurious and Functional ncRNA Transcription. Molecular Cell. PMID 26549684 DOI: 10.1016/j.molcel.2015.09.028  1
2014 Chen J, Grunwald D, Sardo L, Galli A, Plisov S, Nikolaitchik OA, Chen D, Lockett S, Larson DR, Pathak VK, Hu WS. Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein. Proceedings of the National Academy of Sciences of the United States of America. 111: E5205-13. PMID 25404326 DOI: 10.1073/pnas.1413169111  1
2014 Coulon A, Ferguson ML, de Turris V, Palangat M, Chow CC, Larson DR. Kinetic competition during the transcription cycle results in stochastic RNA processing. Elife. 3. PMID 25271374 DOI: 10.7554/eLife.03939  0.8
2014 Levens D, Larson DR. A new twist on transcriptional bursting. Cell. 158: 241-2. PMID 25036624 DOI: 10.1016/j.cell.2014.06.042  1
2013 Larson DR, Fritzsch C, Sun L, Meng X, Lawrence DS, Singer RH. Direct observation of frequency modulated transcription in single cells using light activation. Elife. 2: e00750. PMID 24069527 DOI: 10.7554/eLife.00750  1
2013 Ferguson ML, Larson DR. Measuring transcription dynamics in living cells using fluctuation analysis. Methods in Molecular Biology (Clifton, N.J.). 1042: 47-60. PMID 23979999 DOI: 10.1007/978-1-62703-526-2_4  1
2013 Coulon A, Chow CC, Singer RH, Larson DR. Eukaryotic transcriptional dynamics: from single molecules to cell populations. Nature Reviews. Genetics. 14: 572-84. PMID 23835438 DOI: 10.1038/nrg3484  1
2012 Palangat M, Larson DR. Complexity of RNA polymerase II elongation dynamics. Biochimica Et Biophysica Acta. 1819: 667-72. PMID 22480952 DOI: 10.1016/j.bbagrm.2012.02.024  1
2012 Trcek T, Chao JA, Larson DR, Park HY, Zenklusen D, Shenoy SM, Singer RH. Single-mRNA counting using fluorescent in situ hybridization in budding yeast. Nature Protocols. 7: 408-19. PMID 22301778 DOI: 10.1038/nprot.2011.451  1
2011 Trcek T, Larson DR, Moldón A, Query CC, Singer RH. Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast. Cell. 147: 1484-97. PMID 22196726 DOI: 10.1016/j.cell.2011.11.051  1
2011 Magalhaes MA, Larson DR, Mader CC, Bravo-Cordero JJ, Gil-Henn H, Oser M, Chen X, Koleske AJ, Condeelis J. Cortactin phosphorylation regulates cell invasion through a pH-dependent pathway. The Journal of Cell Biology. 195: 903-20. PMID 22105349 DOI: 10.1083/jcb.201103045  1
2011 Larson DR. What do expression dynamics tell us about the mechanism of transcription? Current Opinion in Genetics & Development. 21: 591-9. PMID 21862317 DOI: 10.1016/j.gde.2011.07.010  1
2011 Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science (New York, N.Y.). 332: 475-8. PMID 21512033 DOI: 10.1126/science.1202142  1
2011 Silverman SJ, Petti AA, Slavov N, Parsons L, Briehof R, Thiberge SY, Zenklusen D, Gandhi SJ, Larson DR, Singer RH, Botstein D. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate (Proceedings of the National Academy of Sciences of the United States of America (2010) 107, (6946-6951) 10.1073/pnas.1002422107) Proceedings of the National Academy of Sciences of the United States of America. 108: 12185. DOI: 10.1073/pnas.1109536108  1
2010 Lionnet T, Wu B, Grünwald D, Singer RH, Larson DR. Nuclear physics: quantitative single-cell approaches to nuclear organization and gene expression. Cold Spring Harbor Symposia On Quantitative Biology. 75: 113-26. PMID 21502409 DOI: 10.1101/sqb.2010.75.057  1
2010 Larson DR. The economy of photons. Nature Methods. 7: 357-9. PMID 20431547 DOI: 10.1038/nmeth0510-357  1
2010 Silverman SJ, Petti AA, Slavov N, Parsons L, Briehof R, Thiberge SY, Zenklusen D, Gandhi SJ, Larson DR, Singer RH, Botstein D. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. Proceedings of the National Academy of Sciences of the United States of America. 107: 6946-51. PMID 20335538 DOI: 10.1073/pnas.1002422107  1
2009 Larson DR, Singer RH, Zenklusen D. A single molecule view of gene expression. Trends in Cell Biology. 19: 630-7. PMID 19819144 DOI: 10.1016/j.tcb.2009.08.008  1
2009 Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B, Tjian R, Singer RH. Imaging transcription in living cells. Annual Review of Biophysics. 38: 173-96. PMID 19416065 DOI: 10.1146/annurev.biophys.050708.133728  1
2009 Lee HM, Larson DR, Lawrence DS. Illuminating the chemistry of life: design, synthesis, and applications of "caged" and related photoresponsive compounds. Acs Chemical Biology. 4: 409-27. PMID 19298086 DOI: 10.1021/cb900036s  1
2008 Zenklusen D, Larson DR, Singer RH. Single-RNA counting reveals alternative modes of gene expression in yeast. Nature Structural & Molecular Biology. 15: 1263-71. PMID 19011635 DOI: 10.1038/nsmb.1514  1
2008 Larson DR, Ow H, Vishwasrao HD, Heikal AA, Wiesner U, Webb WW. Silica nanoparticle architecture determines radiative properties of encapsulated fluorophores Chemistry of Materials. 20: 2677-2684. DOI: 10.1021/cm7026866  1
2005 Larson DR, Gosse JA, Holowka DA, Baird BA, Webb WW. Temporally resolved interactions between antigen-stimulated IgE receptors and Lyn kinase on living cells. The Journal of Cell Biology. 171: 527-36. PMID 16275755 DOI: 10.1083/jcb.200503110  1
2005 Larson DR, Johnson MC, Webb WW, Vogt VM. Visualization of retrovirus budding with correlated light and electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 102: 15453-8. PMID 16230638 DOI: 10.1073/pnas.0504812102  1
2005 Yao J, Larson DR, Vishwasrao HD, Zipfel WR, Webb WW. Blinking and nonradiant dark fraction of water-soluble quantum dots in aqueous solution. Proceedings of the National Academy of Sciences of the United States of America. 102: 14284-9. PMID 16169907 DOI: 10.1073/pnas.0506523102  1
2005 Ow H, Larson DR, Srivastava M, Baird BA, Webb WW, Wiesner U. Bright and stable core-shell fluorescent silica nanoparticles. Nano Letters. 5: 113-7. PMID 15792423 DOI: 10.1021/nl0482478  1
2005 Chitu V, Pixley FJ, Macaluso F, Larson DR, Condeelis J, Yeung YG, Stanley ER. The PCH family member MAYP/PSTPIP2 directly regulates F-actin bundling and enhances filopodia formation and motility in macrophages. Molecular Biology of the Cell. 16: 2947-59. PMID 15788569 DOI: 10.1091/mbc.E04-10-0914  1
2005 Yao J, Larson DR, Zipfel WR, Webb WW. Dark fraction and blinking of water-soluble quantum dots in solution Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5705: 148-151. DOI: 10.1117/12.606131  1
2003 Larson DR, Ma YM, Vogt VM, Webb WW. Direct measurement of Gag-Gag interaction during retrovirus assembly with FRET and fluorescence correlation spectroscopy. The Journal of Cell Biology. 162: 1233-44. PMID 14517204 DOI: 10.1083/jcb.200303200  1
2003 Larson DR, Zipfel WR, Williams RM, Clark SW, Bruchez MP, Wise FW, Webb WW. Water-soluble quantum dots for multiphoton fluorescence imaging in vivo. Science (New York, N.Y.). 300: 1434-6. PMID 12775841 DOI: 10.1126/science.1083780  0.32
2003 Larson DR, Ma YM, Vogt VM, Webb WW. Direct observation of retrovirus assembly with FRET, fluorescence correlation spectroscopy, and single particle tracking Microscopy and Microanalysis. 9: 1146-1147.  1
2002 Thompson RE, Larson DR, Webb WW. Precise nanometer localization analysis for individual fluorescent probes. Biophysical Journal. 82: 2775-83. PMID 11964263 DOI: 10.1016/S0006-3495(02)75618-X  1
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