Sunil Subhash Chandran - Related publications

Affiliations: 
2001 Michigan State University, East Lansing, MI 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Lachance-Brais C, Hennecker CD, Alenaizan A, Luo X, Toader V, Taing M, Sherrill CD, Mittermaier AK, Sleiman HF. Tuning DNA Supramolecular Polymers by the Addition of Small, Functionalized Nucleobase Mimics. Journal of the American Chemical Society. PMID 34783562 DOI: 10.1021/jacs.1c08972   
2021 Bindu Ramesan A, Vittala SK, Joseph J. DNA condensation and formation of ultrathin nanosheets via DNA assisted self-assembly of an amphiphilic fullerene derivative. Journal of Photochemistry and Photobiology. B, Biology. 226: 112352. PMID 34798504 DOI: 10.1016/j.jphotobiol.2021.112352   
2021 Gabriel P, Maranha FG, Nordlander E, Neves A, Terenzi H. A heterotrinuclear bioinspired coordination complex capable of binding to DNA and emulation of nuclease activity. Journal of Inorganic Biochemistry. 226: 111631. PMID 34717251 DOI: 10.1016/j.jinorgbio.2021.111631   
2021 Zhang Y, Feng Y, Liang Y, Yang J, Zhang C. Development of Synthetic DNA Circuit and Networks for Molecular Information Processing. Nanomaterials (Basel, Switzerland). 11. PMID 34835719 DOI: 10.3390/nano11112955   
2021 Qutbuddin Y, Krohn JH, Brüggenthies GA, Stein J, Gavrilovic S, Stehr F, Schwille P. Design Features to Accelerate the Higher-Order Assembly of DNA Origami on Membranes. The Journal of Physical Chemistry. B. PMID 34818013 DOI: 10.1021/acs.jpcb.1c07694   
2021 DebRoy S, Shropshire WC, Tran CN, Hao H, Gohel M, Galloway-Peña J, Hanson B, Flores AR, Shelburne SA. Characterization of the Type I Restriction Modification System Broadly Conserved among Group A Streptococci. Msphere. e0079921. PMID 34787444 DOI: 10.1128/mSphere.00799-21   
2021 Whinn KS, van Oijen AM, Ghodke H. Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways. Dna Repair. 108: 103229. PMID 34601381 DOI: 10.1016/j.dnarep.2021.103229   
2021 Pan W, Wang X, Ma X, Chu Y, Pang S, Chen Y, Guan X, Zou B, Wu Y, Zhou G. Postsynthetic Modification of the Magnetic Zirconium-Organic Framework for Efficient and Rapid Solid-Phase Extraction of DNA. Acs Applied Materials & Interfaces. PMID 34652138 DOI: 10.1021/acsami.1c12622   
2021 Liu W, Duan H, Zhang D, Zhang X, Luo Q, Xie T, Yan H, Peng L, Hu Y, Liang L, Zhao G, Xie Z, Hu J. Concepts and Application of DNA Origami and DNA Self-Assembly: A Systematic Review. Applied Bionics and Biomechanics. 2021: 9112407. PMID 34824603 DOI: 10.1155/2021/9112407   
2021 Gaeta A, Zulkower V, Stracquadanio G. Design and assembly of DNA molecules using multi-objective optimization. Synthetic Biology (Oxford, England). 6: ysab026. PMID 34676304 DOI: 10.1093/synbio/ysab026   
2021 Pan J, Lian K, Sarre A, Leiros HS, Williamson A. Bacteriophage origin of some minimal ATP-dependent DNA ligases: a new structure from Burkholderia pseudomallei with striking similarity to Chlorella virus ligase. Scientific Reports. 11: 18693. PMID 34548548 DOI: 10.1038/s41598-021-98155-w   
2021 Li Y, Pei J, Lu X, Jiao Y, Liu F, Wu X, Liu J, Ding B. Hierarchical Assembly of Super-DNA Origami Based on a Flexible and Covalent-Bound Branched DNA Structure. Journal of the American Chemical Society. PMID 34783532 DOI: 10.1021/jacs.1c09472   
2021 Yao C, Zhang R, Tang J, Yang D. Rolling circle amplification (RCA)-based DNA hydrogel. Nature Protocols. PMID 34716450 DOI: 10.1038/s41596-021-00621-2   
2021 Ge J, Qiu X. Expression, purification, characterization of DNA binding activity and crystallization of a putative type II DNA Cytosine-5-methyltransferase from Microcystis aeruginosa. Protein Expression and Purification. 189: 105988. PMID 34634480 DOI: 10.1016/j.pep.2021.105988   
2021 Suchan T, Kusliy MA, Khan N, Chauvey L, Tonasso-Calvière L, Schiavinato S, Southon J, Keller M, Kitagawa K, Krause J, Bessudnov AN, Bessudnov AA, Graphodatsky AS, Lamas SV, Wilczyński J, et al. Performance and automation of ancient DNA capture with RNA hyRAD probes. Molecular Ecology Resources. PMID 34582623 DOI: 10.1111/1755-0998.13518   
2021 Wang X, Liu M, Peng F, Ding X. Hydrophobic magnetic deep eutectic solvent: Synthesis, properties, and application in DNA separation. Journal of Chromatography. A. 1659: 462626. PMID 34695692 DOI: 10.1016/j.chroma.2021.462626   
2021 Wang W, Shen Y, Wang F, Liu Y, Liu X. Bio-inspired dynamic biomolecule assembling for fine regulation of protein activity. Chemical Communications (Cambridge, England). PMID 34622901 DOI: 10.1039/d1cc03926a   
2021 Xu T, Zhang C, Xia K, Li W, Cao Y, Gu H. Small DNAs that Bind Nickel(II) Specifically and Tightly. Analytical Chemistry. PMID 34734709 DOI: 10.1021/acs.analchem.1c04034   
2021 Zhang J, Fakharzadeh A, Pan F, Roland C, Sagui C. Construction of DNA/RNA Triplex Helices Based on GAA/TTC Trinucleotide Repeats. Bio-Protocol. 11: e4155. PMID 34692905 DOI: 10.21769/BioProtoc.4155   
2021 Garzon M, Mainali S. Deep structure of DNA for genomic analysis. Human Molecular Genetics. PMID 34508577 DOI: 10.1093/hmg/ddab272   
2021 Sauter B, Schneider L, Stress C, Gillingham D. An assessment of the mutational load caused by various reactions used in DNA encoded libraries. Bioorganic & Medicinal Chemistry. 52: 116508. PMID 34800876 DOI: 10.1016/j.bmc.2021.116508   
2021 Tosi L, Chaikban L, Larman BH, Rosenfield J, Parekkadan B. Massively parallel DNA target capture using long adapter single stranded oligonucleotide (LASSO) probes assembled through a novel DNA recombinase mediated methodology. Biotechnology Journal. e2100240. PMID 34775678 DOI: 10.1002/biot.202100240   
2021 Gong S, Zhang S, Wang X, Li J, Pan W, Li N, Tang B. Strand Displacement Amplification Assisted CRISPR-Cas12a Strategy for Colorimetric Analysis of Viral Nucleic Acid. Analytical Chemistry. 93: 15216-15223. PMID 34736322 DOI: 10.1021/acs.analchem.1c04133   
2021 Raza MT, Tandon A, Park S, Lee S, Nguyen TBN, Vu THN, Jo S, Nam Y, Jeon S, Jeong JH, Park SH. Demonstration of elementary functions DNA algorithmic self-assembly. Nanoscale. PMID 34812465 DOI: 10.1039/d1nr05055a   
2021 Zhang T, Tian T, Lin Y. Functionalizing Framework Nucleic Acid-Based Nanostructures for Biomedical Application. Advanced Materials (Deerfield Beach, Fla.). e2107820. PMID 34787933 DOI: 10.1002/adma.202107820   
2021 Li S, Fu Z, Wang C, Shang X, Zhao Y, Liu C, Pei M. An ultrasensitive and specific electrochemical biosensor for DNA detection based on T7 exonuclease-assisted regulatory strand displacement amplification. Analytica Chimica Acta. 1183: 338988. PMID 34627518 DOI: 10.1016/j.aca.2021.338988   
2021 Liu W, Li J, Xu Y, Yin D, Zhu X, Fu H, Su X, Guo X. Complete Mapping of DNA-Protein Interactions at the Single-Molecule Level. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101383. PMID 34609790 DOI: 10.1002/advs.202101383   
2021 Paulsen T, Malapati P, Shibata Y, Wilson B, Eki R, Benamar M, Abbas T, Dutta A. MicroDNA levels are dependent on MMEJ, repressed by c-NHEJ pathway, and stimulated by DNA damage. Nucleic Acids Research. 49: 11787-11799. PMID 34718766 DOI: 10.1093/nar/gkab984   
2021 Nitiss JL, Kiianitsa K, Sun Y, Nitiss KC, Maizels N. Topoisomerase Assays. Current Protocols. 1: e250. PMID 34606690 DOI: 10.1002/cpz1.250   
2021 Emery MV, Bolhofner K, Ghafoor S, Winingear S, Buikstra JE, Fulginiti LC, Stone AC. Whole mitochondrial genomes assembled from thermally altered forensic bones and teeth. Forensic Science International. Genetics. 56: 102610. PMID 34735939 DOI: 10.1016/j.fsigen.2021.102610   
2021 Liu J, Mei Q, Nimer S, Fitzgerald DM, Rosenberg SM. Genomic mapping of DNA-repair reaction intermediates in living cells with engineered DNA structure-trap proteins. Methods in Enzymology. 661: 155-181. PMID 34776211 DOI: 10.1016/bs.mie.2021.09.015   
2021 Huang Z, Yao N, Li X, Tian Y, Duan Y. Self-extending DNA-Mediated Isothermal Amplification System and Its Biosensing Applications. Analytical Chemistry. PMID 34648262 DOI: 10.1021/acs.analchem.1c03636   
2021 Guerin LN, Barnett KR, Hodges E. Dual detection of chromatin accessibility and DNA methylation using ATAC-Me. Nature Protocols. PMID 34663963 DOI: 10.1038/s41596-021-00608-z   
2021 Liu Y, Jeraldo P, Mendes-Soares H, Masters T, Asangba AE, Nelson H, Patel R, Chia N, Walther-Antonio M. Amplification of Femtograms of Bacterial DNA Within 3 h Using a Digital Microfluidics Platform for MinION Sequencing. Acs Omega. 6: 25642-25651. PMID 34632220 DOI: 10.1021/acsomega.1c03683   
2021 Bao T, Fu R, Jiang Y, Wen W, Zhang X, Wang S. Metal-Mediated Polydopamine Nanoparticles-DNA Nanomachine Coupling Electrochemical Conversion of Metal-Organic Frameworks for Ultrasensitive MicroRNA Sensing. Analytical Chemistry. PMID 34586792 DOI: 10.1021/acs.analchem.1c02125   
2021 Ma W, Zhan Y, Zhang Y, Mao C, Xie X, Lin Y. The biological applications of DNA nanomaterials: current challenges and future directions. Signal Transduction and Targeted Therapy. 6: 351. PMID 34620843 DOI: 10.1038/s41392-021-00727-9   
2021 Wu J, Zheng Y, Wang B, Zhang Q. Enhancing Physical and Thermodynamic Properties of DNA Storage Sets with End-constraint. Ieee Transactions On Nanobioscience. PMID 34662278 DOI: 10.1109/TNB.2021.3121278   
2021 Ren J, Lee HM, Shen J, Na D. Advanced biotechnology using methyltransferase and its applications in bacteria: a mini review. Biotechnology Letters. PMID 34820721 DOI: 10.1007/s10529-021-03208-9   
2021 Muzzopappa F, Hertzog M, Erdel F. DNA length tunes the fluidity of DNA-based condensates. Biophysical Journal. 120: 1288-1300. PMID 33640380 DOI: 10.1016/j.bpj.2021.02.027   
2021 Salerno D, Marrano CA, Cassina V, Cristofalo M, Shao Q, Finzi L, Mantegazza F, Dunlap D. Nanomechanics of negatively supercoiled diaminopurine-substituted DNA. Nucleic Acids Research. PMID 34718727 DOI: 10.1093/nar/gkab982   
2021 Ortiz M, Jauset-Rubio M, Skouridou V, Machado D, Viveiros M, Clark TG, Simonova A, Kodr D, Hocek M, O'Sullivan CK. Electrochemical Detection of Single-Nucleotide Polymorphism Associated with Rifampicin Resistance in Using Solid-Phase Primer Elongation with Ferrocene-Linked Redox-Labeled Nucleotides. Acs Sensors. PMID 34797987 DOI: 10.1021/acssensors.1c01710   
2021 Khan JA, Guss AM, Kao KC. Enhancing transcription in Escherichia coli and Pseudomonas putida using bacteriophage lambda anti-terminator protein Q. Biotechnology Letters. PMID 34792701 DOI: 10.1007/s10529-021-03206-x   
2021 Fogg JM, Judge AK, Stricker E, Chan HL, Zechiedrich L. Supercoiling and looping promote DNA base accessibility and coordination among distant sites. Nature Communications. 12: 5683. PMID 34584096 DOI: 10.1038/s41467-021-25936-2   
2021 Ouyang P, Fang C, Han J, Zhang J, Yang Y, Qing Y, Chen Y, Shang W, Du J. A DNA Electrochemical Sensor via Terminal Protection of Small-Molecule-Linked DNA for Highly Sensitive Protein Detection. Biosensors. 11. PMID 34821667 DOI: 10.3390/bios11110451   
2021 Longinotti G, Ybarra G, Vighi S, Perandones C, Montserrat J, Yakisich JS, Grasselli M, Radrizzani M. One Step Histological Detection and Staining of the PTEN Tumor Suppressor Protein by a Single Strand DNA. Diagnostics (Basel, Switzerland). 11. PMID 33530289 DOI: 10.3390/diagnostics11020171   
2021 Zheng M, Li Z, Liu L, Li M, Paluzzi VE, Hyun Choi J, Mao C. Kinetic DNA Self-Assembly: Simultaneously Co-folding Complementary DNA Strands into Identical Nanostructures. Journal of the American Chemical Society. PMID 34808053 DOI: 10.1021/jacs.1c09925   
2021 Wu C, Zhang G, Xu W, Jian S, Peng L, Jia D, Sun J. New Estimation of Antibiotic Resistance Genes in Sediment Along the Haihe River and Bohai Bay in China: A Comparison Between Single and Successive DNA Extraction Methods. Frontiers in Microbiology. 12: 705724. PMID 34616375 DOI: 10.3389/fmicb.2021.705724   
2021 Chatterjee C, Majumdar S, Deshpande S, Pant D, Matheshwaran S. Real-time kinetic studies of Mycobacterium tuberculosis LexA-DNA interaction. Bioscience Reports. 41. PMID 34792534 DOI: 10.1042/BSR20211419   
2021 Hu J, Bai YS, Zheng LL, Jia NX, Yu DJ, Zhang G. Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-based Cube-Format Feature. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34714748 DOI: 10.1109/TCBB.2021.3123828   
2021 Li LL, Lv WY, Wang Y, Li YF, Li CM, Huang CZ. DNA Logic Nanodevices for Real-Time Monitoring of ATP in Lysosomes. Analytical Chemistry. PMID 34756034 DOI: 10.1021/acs.analchem.1c02829