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Daniel Joseph Richter - Publications

Affiliations: 
2013 Molecular and Cell Biology University of California, Berkeley, Berkeley, CA, United States 
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, ... ... Richter DJ, et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. The Journal of Eukaryotic Microbiology. PMID 30257078 DOI: 10.1111/Jeu.12691  0.314
2018 Richter DJ, Fozouni P, Eisen M, King N. Gene family innovation, conservation and loss on the animal stem lineage. Elife. 7. PMID 29848444 DOI: 10.7554/Elife.34226  0.578
2018 Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, ... ... Richter DJ, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 9: 373. PMID 29371626 DOI: 10.1038/S41467-017-02342-1  0.414
2018 Richter DJ, Fozouni P, Eisen MB, King N. Author response: Gene family innovation, conservation and loss on the animal stem lineage Elife. DOI: 10.7554/Elife.34226.052  0.538
2017 Simion P, Philippe H, Baurain D, Jager M, Richter DJ, Di Franco A, Roure B, Satoh N, Quéinnec É, Ereskovsky A, Lapébie P, Corre E, Delsuc F, King N, Wörheide G, et al. A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals. Current Biology : Cb. PMID 28318975 DOI: 10.1016/J.Cub.2017.02.031  0.385
2016 Carr M, Richter DJ, Fozouni P, Smith TJ, Jeuck A, Leadbeater BS, Nitsche F. A six-gene phylogeny provides new insights into choanoflagellate evolution. Molecular Phylogenetics and Evolution. PMID 27765632 DOI: 10.1016/J.Ympev.2016.10.011  0.385
2016 Marron AO, Ratcliffe S, Wheeler GL, Goldstein RE, King N, Not F, de Vargas C, Richter DJ. The Evolution of Silicon Transport in Eukaryotes. Molecular Biology and Evolution. PMID 27729397 DOI: 10.1093/Molbev/Msw209  0.3
2016 Peña JF, Alié A, Richter DJ, Wang L, Funayama N, Nichols SA. Conserved expression of vertebrate microvillar gene homologs in choanocytes of freshwater sponges. Evodevo. 7: 13. PMID 27413529 DOI: 10.1186/S13227-016-0050-X  0.393
2015 Mordret S, Romac S, Henry N, Colin S, Carmichael M, Berney C, Audic S, Richter DJ, Pochon X, de Vargas C, Decelle J. The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.). The Isme Journal. PMID 26684730 DOI: 10.1038/Ismej.2015.211  0.303
2013 Richter DJ, King N. The genomic and cellular foundations of animal origins. Annual Review of Genetics. 47: 509-37. PMID 24050174 DOI: 10.1146/Annurev-Genet-111212-133456  0.433
2013 Fairclough SR, Chen Z, Kramer E, Zeng Q, Young S, Robertson HM, Begovic E, Richter DJ, Russ C, Westbrook MJ, Manning G, Lang BF, Haas B, Nusbaum C, King N. Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta. Genome Biology. 14: R15. PMID 23419129 DOI: 10.1186/Gb-2013-14-2-R15  0.437
2012 Nichols SA, Roberts BW, Richter DJ, Fairclough SR, King N. Origin of metazoan cadherin diversity and the antiquity of the classical cadherin/β-catenin complex. Proceedings of the National Academy of Sciences of the United States of America. 109: 13046-51. PMID 22837400 DOI: 10.1073/Pnas.1120685109  0.387
2008 Caswell JL, Mallick S, Richter DJ, Neubauer J, Schirmer C, Gnerre S, Reich D. Analysis of chimpanzee history based on genome sequence alignments. Plos Genetics. 4: e1000057. PMID 18421364 DOI: 10.1371/Journal.Pgen.1000057  0.379
2008 Liu M, Duke JL, Richter DJ, Vinuesa CG, Goodnow CC, Kleinstein SH, Schatz DG. Two levels of protection for the B cell genome during somatic hypermutation. Nature. 451: 841-5. PMID 18273020 DOI: 10.1038/Nature06547  0.358
2008 King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, ... ... Richter DJ, et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature. 451: 783-8. PMID 18273011 DOI: 10.1038/Nature06617  0.368
2007 Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, Frazer KA, Ballinger DG, ... ... Richter DJ, ... ... Richter DJ, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 449: 913-8. PMID 17943131 DOI: 10.1038/Nature06250  0.349
2007 Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, ... ... Richter DJ, ... ... Richter DJ, et al. A second generation human haplotype map of over 3.1 million SNPs. Nature. 449: 851-61. PMID 17943122 DOI: 10.1038/Nature06258  0.329
2007 Dennis JH, Fan HY, Reynolds SM, Yuan G, Meldrim JC, Richter DJ, Peterson DG, Rando OJ, Noble WS, Kingston RE. Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Research. 17: 928-39. PMID 17568008 DOI: 10.1101/Gr.5636607  0.333
2006 Patterson N, Richter DJ, Gnerre S, Lander ES, Reich D. Genetic evidence for complex speciation of humans and chimpanzees. Nature. 441: 1103-8. PMID 16710306 DOI: 10.1038/Nature04789  0.389
2005 Mikkelsen TS, Hillier LW, Eichler EE, Zody MC, Jaffe DB, Yang S, Enard W, Hellmann I, Lindblad-Toh K, Altheide TK, Archidiacono N, Bork P, Butler J, Chang JL, Cheng Z, ... ... Richter DJ, et al. Initial sequence of the chimpanzee genome and comparison with the human genome Nature. 437: 69-87. PMID 16136131 DOI: 10.1038/Nature04072  0.359
2004 Paez JG, Lin M, Beroukhim R, Lee JC, Zhao X, Richter DJ, Gabriel S, Herman P, Sasaki H, Altshuler D, Li C, Meyerson M, Sellers WR. Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Research. 32: e71. PMID 15150323 DOI: 10.1093/Nar/Gnh069  0.367
2002 Sabeti PC, Reich DE, Higgins JM, Levine HZ, Richter DJ, Schaffner SF, Gabriel SB, Platko JV, Patterson NJ, McDonald GJ, Ackerman HC, Campbell SJ, Altshuler D, Cooper R, Kwiatkowski D, et al. Detecting recent positive selection in the human genome from haplotype structure. Nature. 419: 832-7. PMID 12397357 DOI: 10.1038/Nature01140  0.375
2002 Reich DE, Schaffner SF, Daly MJ, McVean G, Mullikin JC, Higgins JM, Richter DJ, Lander ES, Altshuler D. Human genome sequence variation and the influence of gene history, mutation and recombination. Nature Genetics. 32: 135-42. PMID 12161752 DOI: 10.1038/Ng947  0.402
2001 Reich DE, Cargill M, Bolk S, Ireland J, Sabeti PC, Richter DJ, Lavery T, Kouyoumjian R, Farhadian SF, Ward R, Lander ES. Linkage disequilibrium in the human genome. Nature. 411: 199-204. PMID 11346797 DOI: 10.1038/35075590  0.358
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