Christopher Scott Miller - Publications

Affiliations: 
2008 University of California, Los Angeles, Los Angeles, CA 

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, et al. Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. Frontiers in Microbiology. 7: 238. PMID 26973616 DOI: 10.3389/Fmicb.2016.00238  0.56
2015 Andrade K, Logemann J, Heidelberg KB, Emerson JB, Comolli LR, Hug LA, Probst AJ, Keillar A, Thomas BC, Miller CS, Allen EE, Moreau JW, Brocks JJ, Banfield JF. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. The Isme Journal. PMID 25918833 DOI: 10.1038/Ismej.2015.66  0.56
2015 Narrowe AB, Albuthi-Lantz M, Smith EP, Bower KJ, Roane TM, Vajda AM, Miller CS. Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure. Microbiome. 3: 6. PMID 25815185 DOI: 10.1186/S40168-015-0069-6  0.56
2015 Handley KM, Wrighton KC, Miller CS, Wilkins MJ, Kantor RS, Thomas BC, Williams KH, Gilbert JA, Long PE, Banfield JF. Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points. Environmental Microbiology. 17: 622-36. PMID 24674078 DOI: 10.1111/1462-2920.12467  0.56
2014 Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants. Microbiome. 2: 1. PMID 24468033 DOI: 10.1186/2049-2618-2-1  0.56
2013 Miller CS. Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE. Methods in Enzymology. 531: 333-52. PMID 24060129 DOI: 10.1016/B978-0-12-407863-5.00017-4  0.56
2013 Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LA, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR, Banfield JF, Long PE, Lipton MS. Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface. Plos One. 8: e57819. PMID 23472107 DOI: 10.1371/Journal.Pone.0057819  0.56
2013 Miller CS, Handley KM, Wrighton KC, Frischkorn KR, Thomas BC, Banfield JF. Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. Plos One. 8: e56018. PMID 23405248 DOI: 10.1371/Journal.Pone.0056018  0.56
2013 Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF. Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. The Isme Journal. 7: 800-16. PMID 23190730 DOI: 10.1038/Ismej.2012.148  0.56
2012 Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF. Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (New York, N.Y.). 337: 1661-5. PMID 23019650 DOI: 10.1126/Science.1224041  0.56
2012 Justice NB, Pan C, Mueller R, Spaulding SE, Shah V, Sun CL, Yelton AP, Miller CS, Thomas BC, Shah M, VerBerkmoes N, Hettich R, Banfield JF. Heterotrophic archaea contribute to carbon cycling in low-pH, suboxic biofilm communities. Applied and Environmental Microbiology. 78: 8321-30. PMID 23001646 DOI: 10.1128/Aem.01938-12  0.56
2011 Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Research. 39: 9695-704. PMID 21880595 DOI: 10.1093/Nar/Gkr692  0.56
2011 Gladden JM, Allgaier M, Miller CS, Hazen TC, VanderGheynst JS, Hugenholtz P, Simmons BA, Singer SW. Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass. Applied and Environmental Microbiology. 77: 5804-12. PMID 21724886 DOI: 10.1128/Aem.00032-11  0.56
2011 Miller CS, Baker BJ, Thomas BC, Singer SW, Banfield JF. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biology. 12: R44. PMID 21595876 DOI: 10.1186/Gb-2011-12-5-R44  0.56
2008 Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PA, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH, Eisenberg D, Berliner J, Modlin RL. Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. The Journal of Clinical Investigation. 118: 2917-28. PMID 18636118 DOI: 10.1172/Jci34189  0.56
2008 Williamson SJ, Rusch DB, Yooseph S, Halpern AL, Heidelberg KB, Glass JI, Andrews-Pfannkoch C, Fadrosh D, Miller CS, Sutton G, Frazier M, Venter JC. The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. Plos One. 3: e1456. PMID 18213365 DOI: 10.1371/Journal.Pone.0001456  0.56
2007 Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016  0.56
2004 Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Research. 32: D449-51. PMID 14681454 DOI: 10.1093/nar/gkh086  0.56
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