Linda K. Nicholson - Publications

Affiliations: 
1994- Molecular Biology Cornell University, Ithaca, NY, United States 
Website:
https://mbg.cornell.edu/people/linda-nicholson

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Acevedo LA, Korson NE, Williams JM, Nicholson LK. Tuning a timing device that regulates lateral root development in rice. Journal of Biomolecular Nmr. PMID 31407206 DOI: 10.1007/s10858-019-00258-0  0.32
2019 Acevedo LA, Kwon J, Nicholson LK. Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice. Proceedings of the National Academy of Sciences of the United States of America. PMID 30696765 DOI: 10.1073/pnas.1817038116  0.32
2018 Nechama M, Kwon J, Wei S, Kyi AT, Welner RS, Ben-Dov IZ, Arredouani MS, Asara JM, Chen CH, Tsai CY, Nelson KF, Kobayashi KS, Israel E, Zhou XZ, Nicholson LK, et al. The IL-33-PIN1-IRAK-M axis is critical for type 2 immunity in IL-33-induced allergic airway inflammation. Nature Communications. 9: 1603. PMID 29686383 DOI: 10.1038/s41467-018-03886-6  0.32
2018 Acevedo LA, Nicholson LK. 1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice. Biomolecular Nmr Assignments. PMID 29353448 DOI: 10.1007/s12104-018-9803-x  0.32
2017 Acevedo LA, Greenwood AI, Nicholson LK. A Noncanonical Binding Site in the EVH1 Domain of VASP Regulates Its Interactions with the Proline Rich Region of Zyxin. Biochemistry. PMID 28783324 DOI: 10.1021/acs.biochem.7b00618  0.32
2016 Rogals MJ, Greenwood AI, Kwon J, Lu KP, Nicholson LK. Neighboring phospho-Ser-Pro motifs in the undefined domain of IRAK1 impart bivalent advantage for Pin1 binding. The Febs Journal. PMID 27790836 DOI: 10.1111/febs.13943  0.32
2016 Fisher CL, Resnick RJ, De S, Acevedo LA, Lu KP, Schroeder FC, Nicholson LK. Cyclic cis-Locked Phospho-Dipeptides Reduce Entry of AβPP into Amyloidogenic Processing Pathway. Journal of Alzheimer's Disease : Jad. PMID 27662285 DOI: 10.3233/JAD-160051  0.32
2014 Greenwood AI, Kwon J, Nicholson LK. Isomerase-catalyzed binding of interleukin-1 receptor-associated kinase 1 to the EVH1 domain of vasodilator-stimulated phosphoprotein. Biochemistry. 53: 3593-607. PMID 24857403 DOI: 10.1021/bi500031e  1
2014 Hawse WF, De S, Greenwood AI, Nicholson LK, Zajicek J, Kovrigin EL, Kranz DM, Garcia KC, Baker BM. TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility. Journal of Immunology (Baltimore, Md. : 1950). 192: 2885-91. PMID 24523505 DOI: 10.4049/jimmunol.1302953  1
2012 De S, Greenwood AI, Rogals MJ, Kovrigin EL, Lu KP, Nicholson LK. Complete thermodynamic and kinetic characterization of the isomer-specific interaction between Pin1-WW domain and the amyloid precursor protein cytoplasmic tail phosphorylated at Thr668. Biochemistry. 51: 8583-96. PMID 23025283 DOI: 10.1021/bi3008214  1
2012 Nakamura K, Greenwood A, Binder L, Bigio EH, Denial S, Nicholson L, Zhou XZ, Lu KP. Proline isomer-specific antibodies reveal the early pathogenic tau conformation in Alzheimer's disease. Cell. 149: 232-44. PMID 22464332 DOI: 10.1016/j.cell.2012.02.016  1
2012 Pastorino L, Ma SL, Balastik M, Huang P, Pandya D, Nicholson L, Lu KP. Alzheimer's disease-related loss of Pin1 function influences the intracellular localization and the processing of AβPP. Journal of Alzheimer's Disease : Jad. 30: 277-97. PMID 22430533 DOI: 10.3233/JAD-2012-111259  1
2011 Greenwood AI, Rogals MJ, De S, Lu KP, Kovrigin EL, Nicholson LK. Complete determination of the Pin1 catalytic domain thermodynamic cycle by NMR lineshape analysis. Journal of Biomolecular Nmr. 51: 21-34. PMID 21947912 DOI: 10.1007/s10858-011-9538-9  1
2011 Tun-Kyi A, Finn G, Greenwood A, Nowak M, Lee TH, Asara JM, Tsokos GC, Fitzgerald K, Israel E, Li X, Exley M, Nicholson LK, Lu KP. Essential role for the prolyl isomerase Pin1 in Toll-like receptor signaling and type I interferon-mediated immunity. Nature Immunology. 12: 733-41. PMID 21743479 DOI: 10.1038/ni.2069  1
2011 Nicholson LK, De S. Structural biology: The twist in Crk signaling revealed. Nature Chemical Biology. 7: 5-6. PMID 21164511 DOI: 10.1038/nchembio.504  1
2010 Schepel SA, Fox AJ, Miyauchi JT, Sou T, Yang JD, Lau K, Blum AW, Nicholson LK, Tiburcy F, Nachman RJ, Piermarini PM, Beyenbach KW. The single kinin receptor signals to separate and independent physiological pathways in Malpighian tubules of the yellow fever mosquito. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 299: R612-22. PMID 20538895 DOI: 10.1152/ajpregu.00068.2010  1
2009 Lin YP, Greenwood A, Yan W, Nicholson LK, Sharma Y, McDonough SP, Chang YF. A novel fibronectin type III module binding motif identified on C-terminus of Leptospira immunoglobulin-like protein, LigB. Biochemical and Biophysical Research Communications. 389: 57-62. PMID 19699715 DOI: 10.1016/j.bbrc.2009.08.089  1
2009 Lin YP, Greenwood A, Nicholson LK, Sharma Y, McDonough SP, Chang YF. Fibronectin binds to and induces conformational change in a disordered region of leptospiral immunoglobulin-like protein B. The Journal of Biological Chemistry. 284: 23547-57. PMID 19581300 DOI: 10.1074/jbc.M109.031369  1
2009 Lin YP, Lee DW, McDonough SP, Nicholson LK, Sharma Y, Chang YF. Repeated domains of leptospira immunoglobulin-like proteins interact with elastin and tropoelastin. The Journal of Biological Chemistry. 284: 19380-91. PMID 19473986 DOI: 10.1074/jbc.M109.004531  1
2009 Dawson JE, Seckute J, De S, Schueler SA, Oswald AB, Nicholson LK. Elucidation of a pH-folding switch in the Pseudomonas syringae effector protein AvrPto. Proceedings of the National Academy of Sciences of the United States of America. 106: 8543-8. PMID 19423671 DOI: 10.1073/pnas.0809138106  1
2008 Dawson JE, Nicholson LK. Folding kinetics and thermodynamics of Pseudomonas syringae effector protein AvrPto provide insight into translocation via the type III secretion system. Protein Science : a Publication of the Protein Society. 17: 1109-19. PMID 18577754 DOI: 10.1110/ps.034223.107  1
2007 Jayaraman B, Nicholson LK. Thermodynamic dissection of the Ezrin FERM/CERMAD interface. Biochemistry. 46: 12174-89. PMID 17914868 DOI: 10.1021/bi701281e  1
2007 Lu KP, Finn G, Lee TH, Nicholson LK. Prolyl cis-trans isomerization as a molecular timer. Nature Chemical Biology. 3: 619-29. PMID 17876319 DOI: 10.1038/nchembio.2007.35  1
2007 Xiao F, He P, Abramovitch RB, Dawson JE, Nicholson LK, Sheen J, Martin GB. The N-terminal region of Pseudomonas type III effector AvrPtoB elicits Pto-dependent immunity and has two distinct virulence determinants. The Plant Journal : For Cell and Molecular Biology. 52: 595-614. PMID 17764515 DOI: 10.1111/j.1365-313X.2007.03259.x  1
2007 Nicholson LK, Lu KP. Prolyl cis-trans Isomerization as a molecular timer in Crk signaling. Molecular Cell. 25: 483-5. PMID 17317620 DOI: 10.1016/j.molcel.2007.02.005  1
2006 Jayaraman B, Nicholson LK. Backbone resonance assignments of Ezrin C ERMAD in a non-covalent complex with Ezrin N FERM. Journal of Biomolecular Nmr. 36: 63. PMID 17131035 DOI: 10.1007/s10858-006-9049-2  1
2006 Pastorino L, Sun A, Lu PJ, Zhou XZ, Balastik M, Finn G, Wulf G, Lim J, Li SH, Li X, Xia W, Nicholson LK, Lu KP. The prolyl isomerase Pin1 regulates amyloid precursor protein processing and amyloid-beta production. Nature. 440: 528-34. PMID 16554819 DOI: 10.1038/nature04543  1
2004 Wulf J, Pascuzzi PE, Fahmy A, Martin GB, Nicholson LK. The solution structure of type III effector protein AvrPto reveals conformational and dynamic features important for plant pathogenesis. Structure (London, England : 1993). 12: 1257-68. PMID 15242602 DOI: 10.1016/j.str.2004.04.017  1
2002 Pawley NH, Gans JD, Nicholson LK. Factors determining the reliable description of global tumbling parameters in solution NMR. Journal of Biomolecular Nmr. 24: 215-29. PMID 12522309 DOI: 10.1023/A:1021664605995  1
2002 Pawley NH, Koide S, Nicholson LK. Backbone dynamics and thermodynamics of Borrelia outer surface protein A. Journal of Molecular Biology. 324: 991-1002. PMID 12470954 DOI: 10.1016/S0022-2836(02)01146-4  1
2002 Wulf J, Pascuzzi PE, Martin GB, Nicholson LK. 1H, 15N and 13C chemical shift assignments of the structured core of the pseudomonas effector protein AvrPto. Journal of Biomolecular Nmr. 23: 247-8. PMID 12238599 DOI: 10.1023/A:1019808903257  1
2001 Wang C, Pawley NH, Nicholson LK. The role of backbone motions in ligand binding to the c-Src SH3 domain. Journal of Molecular Biology. 313: 873-87. PMID 11697910 DOI: 10.1006/jmbi.2001.5083  1
2001 Pawley NH, Wang C, Koide S, Nicholson LK. An improved method for distinguishing between anisotropic tumbling and chemical exchange in analysis of 15N relaxation parameters. Journal of Biomolecular Nmr. 20: 149-65. PMID 11495246 DOI: 10.1023/A:1011249816560  1
2001 Reinking JL, Schatz GW, Vogt VM, Nicholson LK. 1H, 15N and 13C assignments of a monomeric N-terminal deletion mutant of the Rous sarcoma virus protease. Journal of Biomolecular Nmr. 19: 279-80. PMID 11330816 DOI: 10.1023/A:1011292010893  1
2001 Schatz GW, Reinking J, Zippin J, Nicholson LK, Vogt VM. Importance of the N terminus of rous sarcoma virus protease for structure and enzymatic function. Journal of Virology. 75: 4761-70. PMID 11312348 DOI: 10.1128/JVI.75.10.4761-4770.2001  1
2001 Loh AP, Pawley N, Nicholson LK, Oswald RE. An increase in side chain entropy facilitates effector binding: NMR characterization of the side chain methyl group dynamics in Cdc42Hs. Biochemistry. 40: 4590-600. PMID 11294626 DOI: 10.1021/bi002418f  1
2001 Ramelot TA, Nicholson LK. Phosphorylation-induced structural changes in the amyloid precursor protein cytoplasmic tail detected by NMR. Journal of Molecular Biology. 307: 871-84. PMID 11273707 DOI: 10.1006/jmbi.2001.4535  1
2001 Wang C, Xi J, Begley TP, Nicholson LK. Solution structure of ThiS and implications for the evolutionary roots of ubiquitin. Nature Structural Biology. 8: 47-51. PMID 11135670 DOI: 10.1038/83041  1
2000 Cordier F, Wang C, Grzesiek S, Nicholson LK. Ligand-induced strain in hydrogen bonds of the c-Src SH3 domain detected by NMR. Journal of Molecular Biology. 304: 497-505. PMID 11099375 DOI: 10.1006/jmbi.2000.4274  1
2000 Zhu G, Xia Y, Nicholson LK, Sze KH. Protein dynamics measurements by TROSY-based NMR experiments. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 143: 423-6. PMID 10729271 DOI: 10.1006/jmre.2000.2022  1
2000 Ramelot TA, Gentile LN, Nicholson LK. Transient structure of the amyloid precursor protein cytoplasmic tail indicates preordering of structure for binding to cytosolic factors. Biochemistry. 39: 2714-25. PMID 10704223 DOI: 10.1021/bi992580m  1
1999 Loh AP, Guo W, Nicholson LK, Oswald RE. Backbone dynamics of inactive, active, and effector-bound Cdc42Hs from measurements of (15)N relaxation parameters at multiple field strengths. Biochemistry. 38: 12547-57. PMID 10504223 DOI: 10.1021/bi9913707  1
1999 Cross TA, Arseniev A, Cornell BA, Davis JH, Killian JA, Koeppe RE, Nicholson LK, Separovic F, Wallace BA. Gramicidin channel controversy--revisited. Nature Structural Biology. 6: 610-1; discussion 61. PMID 10404210 DOI: 10.1038/10650  1
1999 Andersen OS, Apell HJ, Bamberg E, Busath DD, Koeppe RE, Sigworth FJ, Szabo G, Urry DW, Woolley A. Gramicidin channel controversy--the structure in a lipid environment. Nature Structural Biology. 6: 609; discussion 611-. PMID 10404209 DOI: 10.1038/10648  1
1997 Tessari M, Gentile LN, Taylor SJ, Shalloway DI, Nicholson LK, Vuister GW. Heteronuclear NMR studies of the combined Src homology domains 2 and 3 of pp60 c-Src: effects of phosphopeptide binding. Biochemistry. 36: 14561-71. PMID 9398174 DOI: 10.1021/bi9712044  1
1996 Yamazaki T, Hinck AP, Wang YX, Nicholson LK, Torchia DA, Wingfield P, Stahl SJ, Kaufman JD, Chang CH, Domaille PJ, Lam PY. Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Science : a Publication of the Protein Society. 5: 495-506. PMID 8868486 DOI: 10.1002/pro.5560050311  1
1995 Nicholson LK, Yamazaki T, Torchia DA, Grzesiek S, Bax A, Stahl SJ, Kaufman JD, Wingfield PT, Lam PY, Jadhav PK. Flexibility and function in HIV-1 protease. Nature Structural Biology. 2: 274-80. PMID 7796263 DOI: 10.1038/nsb0495-274  1
1994 Yamazaki T, Nicholson LK, Torchia DA, Stahl SJ, Kaufman JD, Wingfield PT, Domaille PJ, Campbell-Burk S. Secondary structure and signal assignments of human-immunodeficiency-virus-1 protease complexed to a novel, structure-based inhibitor. European Journal of Biochemistry / Febs. 219: 707-12. PMID 8307036  1
1994 Yeo JH, Demura M, Asakura T, Fujito T, Imanari M, Nicholson LK, Cross TA. Structural analysis of highly oriented poly(p-phenylene-terephthalamide) by 15N solid-state nuclear magnetic resonance. Solid State Nuclear Magnetic Resonance. 3: 209-18. PMID 7834320 DOI: 10.1016/0926-2040(94)90041-8  1
1994 Yamazaki T, Nicholson LK, Torchia DA, Wingfield P, Stahl SJ, Kaufman JD, Eyermann CJ, Hodge CN, Lam PYS, Ru Y, Jadhav PK, Chang CH, Weber PC. NMR and X-ray evidence that the HIV protease catalytic aspartyl groups are protonated in the complex formed by the protease and a non-peptide cyclic urea-based inhibitor Journal of the American Chemical Society. 116: 10791-10792. DOI: 10.1021/ja00102a057  1
1994 Grzesiek S, Bax A, Nicholson LK, Yamazaki T, Wingfield P, Stahl SJ, Eyermann CJ, Torchia DA, Nicholas Hodge C, Lam PYS, Jadhav PK, Chang CH. NMR evidence for the displacement of a conserved interior water molecule in HIV protease by a non-peptide cyclic urea-based inhibitor Journal of the American Chemical Society. 116: 1581-1582.  1
1993 Nicholson LK, Asakura T, Demura M, Cross TA. A method for studying the structure of uniaxially aligned biopolymers using solid state 15N-nmr: application to Bombyx mori silk fibroin fibers. Biopolymers. 33: 847-61. PMID 8343580 DOI: 10.1002/bip.360330513  1
1993 Asakura T, Yeo JH, Demura M, Itoh T, Fujito T, Imanari M, Nicholson LK, Cross TA. Structural analysis of uniaxially aligned polymers using solid-state 15N NMR Macromolecules. 26: 6660-6663.  1
1992 Nicholson LK, Kay LE, Baldisseri DM, Arango J, Young PE, Bax A, Torchia DA. Dynamics of methyl groups in proteins as studied by proton-detected 13C NMR spectroscopy. Application to the leucine residues of staphylococcal nuclease. Biochemistry. 31: 5253-63. PMID 1606149  1
1992 Kay LE, Nicholson LK, Delaglio F, Bax A, Torchia DA. Pulse sequences for removal of the effects of cross correlation between dipolar and chemical-shift anisotropy relaxation mechanisms on the measurement of heteronuclear T1 and T2 values in proteins Journal of Magnetic Resonance (1969). 97: 359-375. DOI: 10.1016/0022-2364(92)90320-7  1
1992 Kay LE, Bull TE, Nicholson LK, Griesinger C, Schwalbe H, Bax A, Torchia DA. The measurement of heteronuclear transverse relaxation times in ax3 spin systems via polarization-transfer techniques Journal of Magnetic Resonance (1969). 100: 538-558. DOI: 10.1016/0022-2364(92)90058-F  1
1991 Chiu SW, Nicholson LK, Brenneman MT, Subramaniam S, Teng Q, McCammon JA, Cross TA, Jakobsson E. Molecular dynamics computations and solid state nuclear magnetic resonance of the gramicidin cation channel. Biophysical Journal. 60: 974-8. PMID 1720680 DOI: 10.1016/S0006-3495(91)82131-2  1
1991 Nicholson LK, Teng Q, Cross TA. Solid-state nuclear magnetic resonance derived model for dynamics in the polypeptide backbone of the gramicidin A channel. Journal of Molecular Biology. 218: 621-37. PMID 1707979 DOI: 10.1016/0022-2836(91)90706-C  1
1991 Teng Q, Nicholson LK, Cross TA. Experimental determination of torsion angles in the polypeptide backbone of the gramicidin A channel by solid state nuclear magnetic resonance. Journal of Molecular Biology. 218: 607-19. PMID 1707978 DOI: 10.1016/0022-2836(91)90705-B  1
1989 Nicholson LK, Cross TA. Gramicidin cation channel: an experimental determination of the right-handed helix sense and verification of beta-type hydrogen bonding. Biochemistry. 28: 9379-85. PMID 2482072  1
1989 Nicholson LK, LoGrasso PV, Cross TA. Experimental observation of orientational dispersion in the peptide backbone of the gramicidin cation channel Journal of the American Chemical Society. 111: 400-401.  1
1989 LoGrasso PV, Nicholson LK, Cross TA. N-H bond length determinations and implications for the gramicidin channel conformation and dynamics from 15N-1H dipolar interactions Journal of the American Chemical Society. 111: 1910-1912.  1
1988 Killian JA, Nicholson LK, Cross TA. Solid-state 15N-NMR evidence that gramicidin A can adopt two different backbone conformations in dimyristoylphosphatidylcholine model membrane preparations. Biochimica Et Biophysica Acta. 943: 535-40. PMID 2458135 DOI: 10.1016/0005-2736(88)90387-2  1
1987 Nicholson LK, Moll F, Mixon TE, LoGrasso PV, Lay JC, Cross TA. Solid-state 15N NMR of oriented lipid bilayer bound gramicidin A'. Biochemistry. 26: 6621-6. PMID 2447939  1
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