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Peter Sims, Ph.D. - Publications

Affiliations: 
Columbia University, New York, NY 
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17/278 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Bayik D, Silver D, Park C, Watson D, Sorensen M, Roversi G, Lauko A, Alban T, Lo A, Sims P, Barnholtz-Sloan J, Kristensen B, Hyun Hwang T, Khalil A, Iavarone A, et al. IMMU-01. MYELOID-DERIVED SUPPRESSOR CELL HETEROGENEITY DRIVES GLIOBLASTOMA PROGRESSION IN A SEX-DEPENDENT MANNER Neuro-Oncology. 21: vi118-vi118. DOI: 10.1093/Neuonc/Noz175.495  0.302
2019 Zhao W, Spinazzi E, Dovas A, Upadhyayula P, Marie T, Sisti M, Bruce J, Canoll PD, Sims P. COMP-12. SINGLE-CELL TRANSCRIPTOME PROFILING OF GBM TISSUE ACUTE SLICE CULTURES FOR PERSONALIZED DRUG SCREENING Neuro-Oncology. 21: vi63-vi63. DOI: 10.1093/Neuonc/Noz175.255  0.303
2019 Save A, Hollon T, Farooq Z, Boyett D, Hawkins-Daarud A, Yoon H, Singleton K, Clark-Swanson K, Li J, Swanson K, Freudiger C, Orringer D, Lassman A, Sims P, Grinband J, et al. TMOD-14. RADIOGRAPHIC, STIMULATED RAMAN HISTOLOGIC, AND MULTIPLEXED RNA-SEQUENCING ANALYSIS OF POST-TREATMENT RECURRENT HIGH-GRADE GLIOMAS Neuro-Oncology. 21: vi265-vi265. DOI: 10.1093/Neuonc/Noz175.1113  0.617
2018 Ding H, Douglass EF, Sonabend AM, Mela A, Bose S, Gonzalez C, Canoll PD, Sims PA, Alvarez MJ, Califano A. Quantitative assessment of protein activity in orphan tissues and single cells using the metaVIPER algorithm. Nature Communications. 9: 1471. PMID 29662057 DOI: 10.1038/S41467-018-03843-3  0.479
2015 Bose S, Wan Z, Carr A, Rizvi AH, Vieira G, Pe'er D, Sims PA. Scalable microfluidics for single cell RNA printing and sequencing. Genome Biology. 16: 120. PMID 26047807 DOI: 10.1186/S13059-015-0684-3  0.535
2014 Sims J, Grinshpun B, Feng Y, Neira J, Samanamud J, Amendolara B, Canoll P, Sims P, Shen Y, Bruce J. IT-32 * DIVERGENCE OF INTRATUMORAL AND SYSTEMIC T CELL REPERTOIRES REFLECTS LOCAL MONOCYTE PROFILES DURING GLIOMA PROGRESSION Neuro-Oncology. 16: v116-v117. DOI: 10.1093/Neuonc/Nou258.30  0.333
2014 Gill B, Pisapia D, Malone H, Goldstein H, Lei L, Sonabend A, Yun J, Samanamud J, Banu M, Dovas A, Sims J, Teich A, Sheth S, McKhann G, Sisti M, ... ... Sims P, et al. GE-12 * RADIOGRAPHICALLY-LOCALIZED BIOPSIES REVEAL SUBTYPE-SPECIFIC PATTERNS IN MOLECULAR AND CELLULAR COMPOSITION AT THE INFILTRATIVE MARGINS OF GLIOBLASTOMA Neuro-Oncology. 16: v98-v99. DOI: 10.1093/Neuonc/Nou256.12  0.345
2014 Canoll P, Sims P, Gil B, Pisapia D, Malone H, Goldstein H, Lei L, Sonabend A, Yun J, Samanamud J, Sims J, Teich A, Sheth S, McKhann G, Sisti M, et al. IMAGE GUIDED RNA-SEQ REVEALS SUBTYPE-SPECIFIC PATTERNS AT THE INFILTRATIVE MARGINS OF GLIOBLASTOMA Neuro-Oncology. 16: iii10-iii10. DOI: 10.1093/Neuonc/Nou206.34  0.342
2012 Shiroguchi K, Jia TZ, Sims PA, Xie XS. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes. Proceedings of the National Academy of Sciences of the United States of America. 109: 1347-52. PMID 22232676 DOI: 10.1073/pnas.1118018109  0.643
2011 Sims PA, Greenleaf WJ, Duan H, Xie XS. Fluorogenic DNA sequencing in PDMS microreactors. Nature Methods. 8: 575-80. PMID 21666670 DOI: 10.1038/Nmeth.1629  0.517
2011 Greenleaf WJ, Sims PA, Duan H, Xie XS. Fluorogenic Pyrosequencing in Microreactors Biophysical Journal. 100: 368a. DOI: 10.1016/J.Bpj.2010.12.2198  0.429
2009 Sims PA, Xie XS. Probing dynein and kinesin stepping with mechanical manipulation in a living cell. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1511-6. PMID 19504528 DOI: 10.1002/Cphc.200900113  0.385
2008 Nan X, Sims PA, Xie XS. Organelle tracking in a living cell with microsecond time resolution and nanometer spatial precision. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 9: 707-12. PMID 18383236 DOI: 10.1002/Cphc.200700839  0.569
2008 Nan X, Sims PA, Xie XS. Cover Picture: Organelle Tracking in a Living Cell with Microsecond Time Resolution and Nanometer Spatial Precision (ChemPhysChem 5/2008) Chemphyschem. 9: 653-653. DOI: 10.1002/Cphc.200890017  0.552
2005 Nan X, Sims PA, Chen P, Xie XS. Observation of individual microtubule motor steps in living cells with endocytosed quantum dots. The Journal of Physical Chemistry. B. 109: 24220-4. PMID 16375416 DOI: 10.1021/Jp056360W  0.568
2004 Sims PA, Wong CF, McCammon JA. Charge optimization of the interface between protein kinases and their ligands. Journal of Computational Chemistry. 25: 1416-29. PMID 15185335 DOI: 10.1002/Jcc.20067  0.304
2003 Sims PA, Wong CF, McCammon JA. A computational model of binding thermodynamics: the design of cyclin-dependent kinase 2 inhibitors. Journal of Medicinal Chemistry. 46: 3314-25. PMID 12852762 DOI: 10.1021/jm0205043  0.313
Low-probability matches (unlikely to be authored by this person)
2005 Sims PA, Wong CF, Vuga D, McCammon JA, Sefton BM. Relative contributions of desolvation, inter- and intramolecular interactions to binding affinity in protein kinase systems. Journal of Computational Chemistry. 26: 668-81. PMID 15754303 DOI: 10.1002/Jcc.20207  0.295
2015 Sims J, Grinshpun B, Feng Y, Ung T, Neira J, Samanamud J, Canoll P, Shen Y, Sims P, Bruce J. Precision immunophenotyping by high-throughput TCR sequencing in human glioma Journal For Immunotherapy of Cancer. 3. DOI: 10.1186/2051-1426-3-S2-P387  0.289
2019 Wang* V, Obradovic A, Chowdhury N, Aggen D, Bush E, Decastro GJ, Anderson CB, McKiernan JM, Ding H, Sims P, Califano A, Drake CG. MP21-01 SINGLE CELL TRANSCRIPTIONAL PROFILING OF IMMUNE POPULATIONS WITHIN RENAL CELL CARCINOMA TUMOR MICROENVIRONMENT Journal of Urology. 201. DOI: 10.1097/01.Ju.0000555529.56881.26  0.287
2019 Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, ... ... Sims P, et al. Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. Nature Medicine. PMID 30742119 DOI: 10.1038/S41591-019-0349-Y  0.279
2016 Yuan J, Sims PA. An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq. Scientific Reports. 6: 33883. PMID 27670648 DOI: 10.1038/srep33883  0.272
2019 Zhang J, Caruso FP, Sa JK, Justesen S, Nam D, Sims P, Ceccarelli M, Lasorella A, Iavarone A. Abstract LB-065: A high quality neoantigen fitness model cooperates with T lymphocyte infiltrates to identify glioblastoma patients with the longest survival Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-065  0.272
2019 Levitin HM, Yuan J, Cheng YL, Ruiz FJ, Bush EC, Bruce JN, Canoll P, Iavarone A, Lasorella A, Blei DM, Sims PA. gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization. Molecular Systems Biology. 15: e8557. PMID 30796088 DOI: 10.15252/Msb.20188557  0.261
2018 Yuan J, Sheng J, Sims PA. SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing. Genome Biology. 19: 227. PMID 30583733 DOI: 10.1186/s13059-018-1607-x  0.255
2014 Gill BJ, Pisapia DJ, Malone HR, Goldstein H, Lei L, Sonabend A, Yun J, Samanamud J, Sims JS, Banu M, Dovas A, Teich AF, Sheth SA, McKhann GM, Sisti MB, ... ... Sims PA, et al. MRI-localized biopsies reveal subtype-specific differences in molecular and cellular composition at the margins of glioblastoma. Proceedings of the National Academy of Sciences of the United States of America. 111: 12550-5. PMID 25114226 DOI: 10.1073/Pnas.1405839111  0.249
2020 Liu Z, Yuan J, Lasorella A, Iavarone A, Bruce JN, Canoll P, Sims PA. Integrating single-cell RNA-seq and imaging with SCOPE-seq2. Scientific Reports. 10: 19482. PMID 33173156 DOI: 10.1038/s41598-020-76599-w  0.249
2023 Olsen TR, Talla P, Furnari J, Bruce JN, Canoll P, Zha S, Sims PA. Scalable co-sequencing of RNA and DNA from individual nuclei. Biorxiv : the Preprint Server For Biology. PMID 36798358 DOI: 10.1101/2023.02.09.527940  0.247
2020 Capdevila C, Calderon RI, Bush EC, Sheldon-Collins K, Sims PA, Yan KS. Single-Cell Transcriptional Profiling of the Intestinal Epithelium. Methods in Molecular Biology (Clifton, N.J.). 2171: 129-153. PMID 32705639 DOI: 10.1007/978-1-0716-0747-3_8  0.244
2015 Worthley DL, Churchill M, Compton JT, Tailor Y, Rao M, Si Y, Levin D, Schwartz MG, Uygur A, Hayakawa Y, Gross S, Renz BW, Setlik W, Martinez AN, Chen X, ... ... Sims P, et al. Gremlin 1 identifies a skeletal stem cell with bone, cartilage, and reticular stromal potential. Cell. 160: 269-84. PMID 25594183 DOI: 10.1016/J.Cell.2014.11.042  0.239
2018 Levitin HM, Yuan J, Sims PA. Single-Cell Transcriptomic Analysis of Tumor Heterogeneity. Trends in Cancer. 4: 264-268. PMID 29606308 DOI: 10.1016/j.trecan.2018.02.003  0.236
2020 Caruso FP, Garofano L, D'Angelo F, Yu K, Tang F, Yuan J, Zhang J, Cerulo L, Pagnotta SM, Bedognetti D, Sims PA, Suvà M, Su XD, Lasorella A, Iavarone A, et al. A map of tumor-host interactions in glioma at single-cell resolution. Gigascience. 9. PMID 33155039 DOI: 10.1093/gigascience/giaa109  0.233
2014 Sims J, Grinshpun B, Feng Y, Neira J, Samanamud J, Canoll P, Sims P, Shen Y, Bruce J. TCR repertoire divergence reflects micro-environmental immune phenotypes in glioma Journal For Immunotherapy of Cancer. 2. DOI: 10.1186/2051-1426-2-S3-O19  0.231
2023 Levitin HM, Zhao W, Bruce JN, Canoll P, Sims PA. Consensus scHPF Identifies Cell Type-Specific Drug Responses in Glioma by Integrating Large-Scale scRNA-seq. Biorxiv : the Preprint Server For Biology. PMID 38105955 DOI: 10.1101/2023.12.05.570193  0.224
2023 Caron DP, Specht WL, Chen D, Wells SB, Szabo PA, Jensen IJ, Farber DL, Sims PA. Multimodal hierarchical classification of CITE-seq data delineates immune cell states across lineages and tissues. Biorxiv : the Preprint Server For Biology. PMID 37461466 DOI: 10.1101/2023.07.06.547944  0.221
2014 Gonzalez C, Sims JS, Hornstein N, Mela A, Garcia F, Lei L, Gass DA, Amendolara B, Bruce JN, Canoll P, Sims PA. Ribosome profiling reveals a cell-type-specific translational landscape in brain tumors. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 10924-36. PMID 25122893 DOI: 10.1523/JNEUROSCI.0084-14.2014  0.217
2017 Pan Y, Bush EC, Toonen JA, Ma Y, Solga AC, Sims PA, Gutmann DH. Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature. Oncotarget. 8: 52474-52487. PMID 28881745 DOI: 10.18632/Oncotarget.17193  0.217
2017 Pan Y, Bush EC, Toonen JA, Ma Y, Solga AC, Sims PA, Gutmann DH. Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature. Oncotarget. PMID 28477028 DOI: 10.18632/oncotarget.17193  0.217
2021 Zhao W, Dovas A, Spinazzi EF, Levitin HM, Banu MA, Upadhyayula P, Sudhakar T, Marie T, Otten ML, Sisti MB, Bruce JN, Canoll P, Sims PA. Deconvolution of cell type-specific drug responses in human tumor tissue with single-cell RNA-seq. Genome Medicine. 13: 82. PMID 33975634 DOI: 10.1186/s13073-021-00894-y  0.212
2019 Zhao J, Chen AX, Gartrell RD, Silverman AM, Aparicio L, Chu T, Bordbar D, Shan D, Samanamud J, Mahajan A, Filip I, Orenbuch R, Goetz M, Yamaguchi JT, Cloney M, ... ... Sims P, et al. Author Correction: Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. Nature Medicine. PMID 30996326 DOI: 10.1038/S41591-019-0449-8  0.212
2015 Shelanski M, Shin W, Aubry S, Sims P, Alvarez MJ, Califano A. A systems approach to drug discovery in Alzheimer's disease. Neurotherapeutics : the Journal of the American Society For Experimental Neurotherapeutics. 12: 126-31. PMID 25608936 DOI: 10.1007/S13311-014-0335-5  0.212
2013 Sonabend AM, Yun J, Lei L, Leung R, Soderquist C, Crisman C, Gill BJ, Carminucci A, Sisti J, Castelli M, Sims PA, Bruce JN, Canoll P. Murine cell line model of proneural glioma for evaluation of anti-tumor therapies. Journal of Neuro-Oncology. 112: 375-82. PMID 23504257 DOI: 10.1007/s11060-013-1082-x  0.211
2022 Metz JB, Hornstein NJ, Sharma SD, Worley J, Gonzalez C, Sims PA. High-throughput translational profiling with riboPLATE-seq. Scientific Reports. 12: 5718. PMID 35383235 DOI: 10.1038/s41598-022-09638-3  0.211
2016 Hornstein N, Torres D, Das Sharma S, Tang G, Canoll P, Sims PA. Ligation-free ribosome profiling of cell type-specific translation in the brain. Genome Biology. 17: 149. PMID 27380875 DOI: 10.1186/S13059-016-1005-1  0.211
2021 Affo S, Nair A, Brundu F, Ravichandra A, Bhattacharjee S, Matsuda M, Chin L, Filliol A, Wen W, Song X, Decker A, Worley J, Caviglia JM, Yu L, Yin D, ... ... Sims P, et al. Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations. Cancer Cell. PMID 33930309 DOI: 10.1016/j.ccell.2021.03.012  0.204
2018 Juliano J, Gil O, Hawkins-Daarud A, Noticewala S, Rockne RC, Gallaher J, Massey SC, Sims PA, Anderson ARA, Swanson KR, Canoll P. Comparative dynamics of microglial and glioma cell motility at the infiltrative margin of brain tumours. Journal of the Royal Society, Interface. 15. PMID 29445035 DOI: 10.1098/Rsif.2017.0582  0.194
2020 Hobson BD, Kong L, Hartwick EW, Gonzalez RL, Sims PA. Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes. Elife. 9. PMID 32844746 DOI: 10.7554/eLife.60048  0.193
2019 Farber DL, Sims PA. Dissecting lung development and fibrosis at single-cell resolution. Genome Medicine. 11: 33. PMID 31126351 DOI: 10.1186/S13073-019-0645-7  0.193
2023 Al-Dalahmah O, Argenziano MG, Kannan A, Mahajan A, Furnari J, Paryani F, Boyett D, Save A, Humala N, Khan F, Li J, Lu H, Sun Y, Tuddenham JF, Goldberg AR, ... ... Sims PA, et al. Re-convolving the compositional landscape of primary and recurrent glioblastoma reveals prognostic and targetable tissue states. Nature Communications. 14: 2586. PMID 37142563 DOI: 10.1038/s41467-023-38186-1  0.189
2021 Capdevila C, Trifas M, Miller J, Anderson T, Sims PA, Yan KS. Cellular origins and lineage relationships of the intestinal epithelium. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 34431400 DOI: 10.1152/ajpgi.00188.2021  0.189
2023 Sugiura K, Masuike Y, Suzuki K, Shin AE, Sakai N, Matsubara H, Ohtsuka M, Sims PA, Lengner CJ, Rustgi AK. LIN28B promotes cell invasion and colorectal cancer metastasis via CLDN1 and NOTCH3. Jci Insight. PMID 37318881 DOI: 10.1172/jci.insight.167310  0.188
2013 Grinshpun B, Sims J, Canoll P, Bruce JN, Sims P, Shen Y. Analyzing T cell repertoire diversity by high-throughput sequencing 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 53-56. DOI: 10.1109/GlobalSIP.2013.6736810  0.186
2023 Liu Z, Mela A, Argenziano MG, Banu MA, Furnari J, Kotidis C, Sperring CP, Humala N, Mahajan A, Bruce JN, Canoll P, Sims PA. Single-cell analysis of 5-aminolevulinic acid intraoperative labeling specificity for glioblastoma. Journal of Neurosurgery. 1-11. PMID 37773782 DOI: 10.3171/2023.7.JNS23122  0.185
2015 Venere M, Horbinski C, Crish JF, Jin X, Vasanji A, Major J, Burrows AC, Chang C, Prokop J, Wu Q, Sims PA, Canoll P, Summers MK, Rosenfeld SS, Rich JN. The mitotic kinesin KIF11 is a driver of invasion, proliferation, and self-renewal in glioblastoma. Science Translational Medicine. 7: 304ra143. PMID 26355032 DOI: 10.1126/Scitranslmed.Aac6762  0.185
2019 Ma W, Lee J, Backenroth D, Zhou YJ, Bush E, Sims P, Liu K, Shen Y. Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose. Bmc Molecular and Cell Biology. 20: 20. PMID 31253076 DOI: 10.1186/s12860-019-0199-y  0.183
2002 Silverman RH, Halloum A, Zhou A, Dong B, Al-Zoghaibi F, Kushner D, Zhou Q, Zhao J, Wiedmer T, Sims PJ. Suppression of ovarian carcinoma cell growth in vivo by the interferon-inducible plasma membrane protein, phospholipid scramblase 1. Cancer Research. 62: 397-402. PMID 11809687  0.183
2018 Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA. Single-cell transcriptome analysis of lineage diversity in high-grade glioma. Genome Medicine. 10: 57. PMID 30041684 DOI: 10.1186/S13073-018-0567-9  0.175
2013 Ambady P, Holdhoff M, Ferrigno C, Grossman S, Anderson MD, Liu D, Conrad C, Penas-Prado M, Gilbert MR, Yung AWK, Groot Jd, Aoki T, Nishikawa R, Sugiyama K, Nonoguchi N, ... ... Sims P, et al. Neuro/Medical Oncology Neuro-Oncology. 15: 120-120. DOI: 10.1093/Neuonc/Not182  0.174
2016 Sims JS, Grinshpun B, Feng Y, Ung TH, Neira JA, Samanamud JL, Canoll P, Shen Y, Sims PA, Bruce JN. Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire. Proceedings of the National Academy of Sciences of the United States of America. PMID 27261081 DOI: 10.1073/Pnas.1601012113  0.17
2017 Bush EC, Ray F, Alvarez MJ, Realubit R, Li H, Karan C, Califano A, Sims PA. PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens. Nature Communications. 8: 105. PMID 28740083 DOI: 10.1038/S41467-017-00136-Z  0.17
2020 Pan H, Xue C, Auerbach BJ, Fan J, Bashore AC, Cui J, Yang DY, Trignano SB, Liu W, Shi J, Ihuegbu CO, Bush EC, Worley J, Vlahos L, Laise P, ... ... Sims PA, et al. Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human. Circulation. PMID 32962412 DOI: 10.1161/CIRCULATIONAHA.120.048378  0.168
2018 Pan Y, Duron C, Bush EC, Ma Y, Sims PA, Gutmann DH, Radunskaya A, Hardin J. Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma. Plos One. 13: e0190001. PMID 29787563 DOI: 10.1371/Journal.Pone.0190001  0.165
2005 Zhou Q, Ben-Efraim I, Bigcas JL, Junqueira D, Wiedmer T, Sims PJ. Phospholipid scramblase 1 binds to the promoter region of the inositol 1,4,5-triphosphate receptor type 1 gene to enhance its expression. The Journal of Biological Chemistry. 280: 35062-8. PMID 16091359 DOI: 10.1074/Jbc.M504821200  0.163
2004 Nirmalan N, Sims PF, Hyde JE. Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition. Molecular Microbiology. 52: 1187-99. PMID 15130134 DOI: 10.1111/j.1365-2958.2004.04049.x  0.162
2017 Yuan J, Sims PA. SPOTs fill a major gap in RNA quantification. Nature Methods. 14: 1137-1138. PMID 29190269 DOI: 10.1038/nmeth.4515  0.159
2016 Lescarbeau RS, Lei L, Bakken KK, Sims PA, Sarkaria JN, Canoll P, White FM. Quantitative phosphoproteomics reveals Wee1 kinase as a therapeutic target in a model of proneural glioblastoma. Molecular Cancer Therapeutics. PMID 27009214 DOI: 10.1158/1535-7163.Mct-15-0692-T  0.158
2015 Castelli LM, Talavera D, Kershaw CJ, Mohammad-Qureshi SS, Costello JL, Rowe W, Sims PF, Grant CM, Hubbard SJ, Ashe MP, Pavitt GD. The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation. Plos Genetics. 11: e1005233. PMID 25973932 DOI: 10.1371/Journal.Pgen.1005233  0.157
2020 Mizrak D, Bayin NS, Yuan J, Liu Z, Suciu RM, Niphakis MJ, Ngo N, Lum KM, Cravatt BF, Joyner AL, Sims PA. Single-Cell Profiling and SCOPE-Seq Reveal Lineage Dynamics of Adult Ventricular-Subventricular Zone Neurogenesis and NOTUM as a Key Regulator. Cell Reports. 31: 107805. PMID 32579931 DOI: 10.1016/J.Celrep.2020.107805  0.157
2019 Szabo PA, Levitin HM, Miron M, Snyder ME, Senda T, Yuan J, Cheng YL, Bush EC, Dogra P, Thapa P, Farber DL, Sims PA. Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease. Nature Communications. 10: 4706. PMID 31624246 DOI: 10.1038/S41467-019-12464-3  0.156
2022 Agrafioti P, Morin-Baxter J, Tanagala KKK, Dubey S, Sims P, Lalla E, Momen-Heravi F. Decoding the role of macrophages in periodontitis and type 2 diabetes using single-cell RNA-sequencing. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 36: e22136. PMID 35032412 DOI: 10.1096/fj.202101198R  0.155
2016 Lescarbeau RS, Lei L, Bakken KK, Sims PA, Sarkaria JN, Canoll P, White FM. Quantitative Phosphoproteomics Reveals Wee1 Kinase as a Therapeutic Target in a Model of Proneural Glioblastoma. Molecular Cancer Therapeutics. PMID 27196784 DOI: 10.1158/1535-7163.MCT-15-0692-T  0.154
2019 Sheth RU, Li M, Jiang W, Sims PA, Leong KW, Wang HH. Spatial metagenomic characterization of microbial biogeography in the gut. Nature Biotechnology. PMID 31332325 DOI: 10.1038/S41587-019-0183-2  0.153
2021 Chen AX, Gartrell RD, Zhao J, Upadhyayula PS, Zhao W, Yuan J, Minns HE, Dovas A, Bruce JN, Lasorella A, Iavarone A, Canoll P, Sims PA, Rabadan R. Single-cell characterization of macrophages in glioblastoma reveals MARCO as a mesenchymal pro-tumor marker. Genome Medicine. 13: 88. PMID 34011400 DOI: 10.1186/s13073-021-00906-x  0.153
2021 Bhattacharjee S, Hamberger F, Ravichandra A, Miller M, Nair A, Affo S, Filliol A, Chin L, Savage TM, Yin D, Wirsik NM, Mehal A, Arpaia N, Seki E, Mack M, ... ... Sims PA, et al. Tumor restriction by type I collagen opposes tumor-promoting effects of cancer-associated fibroblasts. The Journal of Clinical Investigation. PMID 33905375 DOI: 10.1172/JCI146987  0.153
2019 Mizrak D, Levitin HM, Delgado AC, Crotet V, Yuan J, Chaker Z, Silva-Vargas V, Sims PA, Doetsch F. Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages. Cell Reports. 26: 394-406.e5. PMID 30625322 DOI: 10.1016/J.Celrep.2018.12.044  0.151
2006 Huang Y, Zhao Q, Zhou CX, Gu ZM, Li D, Xu HZ, Wiedmer T, Sims PJ, Zhao KW, Chen GQ. Antileukemic roles of human phospholipid scramblase 1 gene, evidence from inducible PLSCR1-expressing leukemic cells. Oncogene. 25: 6618-27. PMID 16702944 DOI: 10.1038/sj.onc.1209677  0.15
2019 Zhang J, Caruso FP, Sa JK, Justesen S, Nam DH, Sims P, Ceccarelli M, Lasorella A, Iavarone A. The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival. Communications Biology. 2: 135. PMID 31924991 DOI: 10.1038/s42003-019-0369-7  0.15
2019 Zhang J, Caruso FP, Sa JK, Justesen S, Nam DH, Sims P, Ceccarelli M, Lasorella A, Iavarone A. The combination of neoantigen quality and T lymphocyte infiltrates identifies glioblastomas with the longest survival. Communications Biology. 2: 135. PMID 31044160 DOI: 10.1038/s42003-019-0369-7  0.15
2023 Cheng YL, Banu MA, Zhao W, Rosenfeld SS, Canoll P, Sims PA. Multiplexed single-cell lineage tracing of mitotic kinesin inhibitor resistance in glioblastoma. Biorxiv : the Preprint Server For Biology. PMID 37745469 DOI: 10.1101/2023.09.09.557001  0.149
2009 Chen S, Martin C, Maya-Mendoza A, Tang CW, Lovri? J, Sims PF, Jackson DA. Reduced expression of lamin A/C results in modified cell signaling and metabolism coupled with changes in expression of structural proteins. Journal of Proteome Research. 8: 5196-211. PMID 19775189 DOI: 10.1021/pr900549a  0.149
2023 Banu MA, Dovas A, Argenziano MG, Zhao W, Grajal HC, Higgins DMO, Sperring CP, Pereira B, Ye LF, Mahajan A, Humala N, Furnari JL, Upadhyayula PS, Zandkarimi F, Nguyen TTT, ... ... Sims PA, et al. A cell state specific metabolic vulnerability to GPX4-dependent ferroptosis in glioblastoma. Biorxiv : the Preprint Server For Biology. PMID 36865302 DOI: 10.1101/2023.02.22.529581  0.148
2007 Lu PJ, Sims PA, Oki H, Macarthur JB, Weitz DA. Target-locking acquisition with real-time confocal (TARC) microscopy. Optics Express. 15: 8702-12. PMID 19547205 DOI: 10.1364/OE.15.008702  0.147
2004 Zhao KW, Li X, Zhao Q, Huang Y, Li D, Peng ZG, Shen WZ, Zhao J, Zhou Q, Chen Z, Sims PJ, Wiedmer T, Chen GQ. Protein kinase Cdelta mediates retinoic acid and phorbol myristate acetate-induced phospholipid scramblase 1 gene expression: its role in leukemic cell differentiation. Blood. 104: 3731-8. PMID 15308560 DOI: 10.1182/Blood-2004-04-1630  0.144
2019 Martuscello RT, Kerridge CA, Chatterjee D, Hartstone WG, Kuo SH, Sims PA, Louis ED, Faust PL. Gene Expression Analysis of the Cerebellar Cortex in Essential Tremor. Neuroscience Letters. 134540. PMID 31707044 DOI: 10.1016/J.Neulet.2019.134540  0.144
2015 Kershaw CJ, Costello JL, Castelli LM, Talavera D, Rowe W, Sims PF, Ashe MP, Hubbard SJ, Pavitt GD, Grant CM. The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response. Plos Genetics. 11: e1004903. PMID 25569619 DOI: 10.1371/Journal.Pgen.1004903  0.144
2022 Masuda K, Kornberg A, Miller J, Lin S, Suek N, Botella T, Secener KA, Baccarella AM, Cheng L, Ingham M, Rosario V, Al-Mazrou AM, Lee-Kong SA, Kiran RP, Stoeckius M, ... ... Sims PA, et al. Multiplexed single-cell analysis reveals prognostic and non-prognostic T cell types in human colorectal cancer. Jci Insight. PMID 35192548 DOI: 10.1172/jci.insight.154646  0.141
2004 Ben-Efraim I, Zhou Q, Wiedmer T, Gerace L, Sims PJ. Phospholipid scramblase 1 is imported into the nucleus by a receptor-mediated pathway and interacts with DNA. Biochemistry. 43: 3518-26. PMID 15035622 DOI: 10.1021/Bi0356911  0.14
2004 Dong B, Zhou Q, Zhao J, Zhou A, Harty RN, Bose S, Banerjee A, Slee R, Guenther J, Williams BR, Wiedmer T, Sims PJ, Silverman RH. Phospholipid scramblase 1 potentiates the antiviral activity of interferon. Journal of Virology. 78: 8983-93. PMID 15308695 DOI: 10.1128/Jvi.78.17.8983-8993.2004  0.14
2008 Dittrich S, Mitchell SL, Blagborough AM, Wang Q, Wang P, Sims PF, Hyde JE. An atypical orthologue of 6-pyruvoyltetrahydropterin synthase can provide the missing link in the folate biosynthesis pathway of malaria parasites. Molecular Microbiology. 67: 609-18. PMID 18093090 DOI: 10.1111/j.1365-2958.2007.06073.x  0.14
2015 Pugliese KM, Gul OT, Choi Y, Olsen TJ, Sims PC, Collins PG, Weiss GA. Processive Incorporation of Deoxynucleoside Triphosphate Analogs by Single-Molecule DNA Polymerase I (Klenow Fragment) Nanocircuits. Journal of the American Chemical Society. PMID 26147714 DOI: 10.1021/Jacs.5B02074  0.139
2021 Damaghi M, West J, Robertson-Tessi M, Xu L, Ferrall-Fairbanks MC, Stewart PA, Persi E, Fridley BL, Altrock PM, Gatenby RA, Sims PA, Anderson ARA, Gillies RJ. The harsh microenvironment in early breast cancer selects for a Warburg phenotype. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33452133 DOI: 10.1073/pnas.2011342118  0.139
2013 Choi Y, Sims PC, Olsen TJ, Iftikhar M, Corso BL, Gul OT, Weiss GA, Collins PG. Single molecule sensing with carbon nanotube devices Proceedings of Spie - the International Society For Optical Engineering. 8814. DOI: 10.1117/12.2025661  0.138
2006 Li Y, Rogulski K, Zhou Q, Sims PJ, Prochownik EV. The negative c-Myc target onzin affects proliferation and apoptosis via its obligate interaction with phospholipid scramblase 1. Molecular and Cellular Biology. 26: 3401-13. PMID 16611984 DOI: 10.1128/MCB.26.9.3401-3413.2006  0.138
2014 Sonabend AM, Bansal M, Guarnieri P, Lei L, Amendolara B, Soderquist C, Leung R, Yun J, Kennedy B, Sisti J, Bruce S, Bruce R, Shakya R, Ludwig T, Rosenfeld S, ... Sims PA, et al. The transcriptional regulatory network of proneural glioma determines the genetic alterations selected during tumor progression. Cancer Research. 74: 1440-51. PMID 24390738 DOI: 10.1158/0008-5472.Can-13-2150  0.137
2015 Kershaw CJ, Costello JL, Talavera D, Rowe W, Castelli LM, Sims PF, Grant CM, Ashe MP, Hubbard SJ, Pavitt GD. Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p. Scientific Reports. 5: 15518. PMID 26493364 DOI: 10.1038/Srep15518  0.137
2023 Mundi PS, Dela Cruz FS, Grunn A, Diolaiti D, Mauguen A, Rainey AR, Guillan K, Siddiquee A, You D, Realubit R, Karan C, Ortiz MV, Douglass EF, Accordino M, Mistretta S, ... ... Sims PA, et al. A transcriptome-based precision oncology platform for patient-therapy alignment in a diverse set of treatment resistant malignancies. Cancer Discovery. PMID 37061969 DOI: 10.1158/2159-8290.CD-22-1020  0.137
2024 Wells SB, Rainbow DB, Mark M, Szabo PA, Ergen C, Maceiras AR, Caron DP, Rahmani E, Benuck E, Amiri VVP, Chen D, Wagner A, Howlett SK, Jarvis LB, Ellis KL, ... ... Sims PA, et al. Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age. Biorxiv : the Preprint Server For Biology. PMID 38260588 DOI: 10.1101/2024.01.03.573877  0.136
2019 Das Sharma S, Metz JB, Li H, Hobson BD, Hornstein N, Sulzer D, Tang G, Sims PA. Widespread Alterations in Translation Elongation in the Brain of Juvenile Fmr1 Knockout Mice. Cell Reports. 26: 3313-3322.e5. PMID 30893603 DOI: 10.1016/J.Celrep.2019.02.086  0.136
2009 Chen S, Maya-Mendoza A, Zeng K, Tang CW, Sims PF, Loric J, Jackson DA. Interaction with checkpoint kinase 1 modulates the recruitment of nucleophosmin to chromatin. Journal of Proteome Research. 8: 4693-704. PMID 19694479 DOI: 10.1021/pr900396d  0.136
2013 Olsen TJ, Choi Y, Sims PC, Gul OT, Corso BL, Dong C, Brown WA, Collins PG, Weiss GA. Electronic measurements of single-molecule processing by DNA polymerase I (Klenow fragment). Journal of the American Chemical Society. 135: 7855-60. PMID 23631761 DOI: 10.1021/Ja311603R  0.135
2013 Sims JS, Grinshpun B, Amendolara BI, Shen Y, Canoll PD, Sims PA, Bruce JN. Tumor-associated T cell receptor repertoires in low- and high-grade gliomas Journal For Immunotherapy of Cancer. 1. DOI: 10.1186/2051-1426-1-S1-P143  0.133
2009 Sims JS, Militello KT, Sims PA, Patel VP, Kasper JM, Wirth DF. Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle. Eukaryotic Cell. 8: 327-38. PMID 19151330 DOI: 10.1128/Ec.00340-08  0.131
2009 Martin C, Chen S, Maya-Mendoza A, Lovric J, Sims PF, Jackson DA. Lamin B1 maintains the functional plasticity of nucleoli. Journal of Cell Science. 122: 1551-62. PMID 19383719 DOI: 10.1242/jcs.046284  0.13
2004 Wang P, Nirmalan N, Wang Q, Sims PF, Hyde JE. Genetic and metabolic analysis of folate salvage in the human malaria parasite Plasmodium falciparum. Molecular and Biochemical Parasitology. 135: 77-87. PMID 15287589 DOI: 10.1016/j.molbiopara.2004.01.008  0.129
2021 Kenchappa RS, Liu Y, Argenziano MG, Banu MA, Mladek AC, West R, Luu A, Quiñones-Hinojosa A, Hambardzumyan D, Justilien V, Leitges M, Sarkaria JN, Sims PA, Canoll P, Murray NR, et al. Protein kinase C and SRC signaling define reciprocally related subgroups of glioblastoma with distinct therapeutic vulnerabilities. Cell Reports. 37: 110054. PMID 34818553 DOI: 10.1016/j.celrep.2021.110054  0.129
2022 Snyder ME, Moghbeli K, Bondonese A, Craig A, Popescu I, Fan L, Tabib T, Lafyatis R, Chen K, Trejo Bittar HE, Lendermon E, Pilewski J, Johnson B, Kilaru S, Zhang Y, ... ... Sims PA, et al. Modulation of tissue resident memory T cells by glucocorticoids after acute cellular rejection in lung transplantation. The Journal of Experimental Medicine. 219. PMID 35285873 DOI: 10.1084/jem.20212059  0.126
2021 Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, ... ... Sims P, et al. ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. Nature Cancer. 2: 1372-1386. PMID 35121903 DOI: 10.1038/s43018-021-00260-2  0.126
2009 Friedberg JW, Kelly JL, Neuberg D, Peterson DR, Kutok JL, Salloum R, Brenn T, Fisher DC, Ronan E, Dalton V, Rich L, Marquis D, Sims P, Rothberg PG, Liesveld J, et al. Phase II study of a TLR-9 agonist (1018 ISS) with rituximab in patients with relapsed or refractory follicular lymphoma. British Journal of Haematology. 146: 282-91. PMID 19519691 DOI: 10.1111/J.1365-2141.2009.07773.X  0.126
2011 Brownridge P, Holman SW, Gaskell SJ, Grant CM, Harman VM, Hubbard SJ, Lanthaler K, Lawless C, O'Cualain R, Sims P, Watkins R, Beynon RJ. Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy. Proteomics. 11: 2957-70. PMID 21710569 DOI: 10.1002/Pmic.201100039  0.123
2004 Thomas-Virnig CL, Sims PA, Simske JS, Hardin J. The inositol 1,4,5-trisphosphate receptor regulates epidermal cell migration in Caenorhabditis elegans. Current Biology : Cb. 14: 1882-7. PMID 15498499 DOI: 10.1016/J.Cub.2004.10.001  0.123
2013 Choi Y, Olsen TJ, Sims PC, Moody IS, Corso BL, Dang MN, Weiss GA, Collins PG. Dissecting single-molecule signal transduction in carbon nanotube circuits with protein engineering. Nano Letters. 13: 625-31. PMID 23323846 DOI: 10.1021/Nl304209P  0.123
2021 Szabo PA, Dogra P, Gray JI, Wells SB, Connors TJ, Weisberg SP, Krupska I, Matsumoto R, Poon MML, Idzikowski E, Morris SE, Pasin C, Yates AJ, Ku A, Chait M, ... ... Sims PA, et al. Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19. Immunity. PMID 33765436 DOI: 10.1016/j.immuni.2021.03.005  0.123
2021 Poon MML, Byington E, Meng W, Kubota M, Matsumoto R, Grifoni A, Weiskopf D, Dogra P, Lam N, Szabo PA, Ural BB, Wells SB, Rosenfeld AM, Brusko MA, Brusko TM, ... ... Sims PA, et al. Heterogeneity of human anti-viral immunity shaped by virus, tissue, age, and sex. Cell Reports. 37: 110071. PMID 34852222 DOI: 10.1016/j.celrep.2021.110071  0.119
2012 Men Y, Fu Y, Chen Z, Sims PA, Greenleaf WJ, Huang Y. Digital polymerase chain reaction in an array of femtoliter polydimethylsiloxane microreactors. Analytical Chemistry. 84: 4262-6. PMID 22482776 DOI: 10.1021/Ac300761N  0.118
2002 Zhou Q, Zhao J, Wiedmer T, Sims PJ. Normal hemostasis but defective hematopoietic response to growth factors in mice deficient in phospholipid scramblase 1. Blood. 99: 4030-8. PMID 12010804 DOI: 10.1182/Blood-2001-12-0271  0.118
2022 Middelhoff M, Valenti G, Tomassoni L, Ochiai Y, Belin B, Takahashi R, Malagola E, Nienhüser H, Finlayson M, Hayakawa Y, Zamechek LB, Renz BW, Westphalen CB, Quante M, Margolis KG, ... Sims PA, et al. Adult enteric Dclk1-positive glial and neuronal cells reveal distinct responses to acute intestinal injury. American Journal of Physiology. Gastrointestinal and Liver Physiology. 322: G583-G597. PMID 35319286 DOI: 10.1152/ajpgi.00244.2021  0.117
2024 Goldberg AR, Dovas A, Torres D, Das Sharma S, Mela A, Merricks EM, Olabarria M, Shokooh LA, Zhao HT, Kotidis C, Calvaresi P, Viswanathan A, Banu MA, Razavilar A, Sudhakar TD, ... ... Sims PA, et al. Glioma-Induced Alterations in Excitatory Neurons are Reversed by mTOR Inhibition. Biorxiv : the Preprint Server For Biology. PMID 38293120 DOI: 10.1101/2024.01.10.575092  0.116
2007 Nirmalan N, Flett F, Skinner T, Hyde JE, Sims PF. Microscale solution isoelectric focusing as an effective strategy enabling containment of hemeoglobin-derived products for high-resolution gel-based analysis of the Plasmodium falciparum proteome. Journal of Proteome Research. 6: 3780-7. PMID 17696383 DOI: 10.1021/pr070278r  0.115
2023 Poon MML, Caron DP, Wang Z, Wells SB, Chen D, Meng W, Szabo PA, Lam N, Kubota M, Matsumoto R, Rahman A, Luning Prak ET, Shen Y, Sims PA, Farber DL. Tissue adaptation and clonal segregation of human memory T cells in barrier sites. Nature Immunology. PMID 36658238 DOI: 10.1038/s41590-022-01395-9  0.115
2004 Nirmalan N, Sims PF, Hyde JE. Translational up-regulation of antifolate drug targets in the human malaria parasite Plasmodium falciparum upon challenge with inhibitors. Molecular and Biochemical Parasitology. 136: 63-70. PMID 15138068 DOI: 10.1016/j.molbiopara.2004.02.013  0.114
2021 Yun TJ, Igarashi S, Zhao H, Perez OA, Pereira MR, Zorn E, Shen Y, Goodrum F, Rahman A, Sims PA, Farber DL, Reizis B. Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells. Science Immunology. 6. PMID 33811059 DOI: 10.1126/sciimmunol.abc7302  0.114
2005 Friedberg JW, Kim H, McCauley M, Hessel EM, Sims P, Fisher DC, Nadler LM, Coffman RL, Freedman AS. Combination immunotherapy with a CpG oligonucleotide (1018 ISS) and rituximab in patients with non-Hodgkin lymphoma: increased interferon-alpha/beta-inducible gene expression, without significant toxicity. Blood. 105: 489-95. PMID 15358617 DOI: 10.1182/Blood-2004-06-2156  0.114
2014 Rowe W, Kershaw CJ, Castelli LM, Costello JL, Ashe MP, Grant CM, Sims PF, Pavitt GD, Hubbard SJ. Puf3p induces translational repression of genes linked to oxidative stress. Nucleic Acids Research. 42: 1026-41. PMID 24163252 DOI: 10.1093/nar/gkt948  0.11
2009 Sims P, Coffman RL, Hessel EM. Biomarkers measuring the activity of Toll-like receptor ligands in clinical development programs. Methods in Molecular Biology (Clifton, N.J.). 517: 415-40. PMID 19378019 DOI: 10.1007/978-1-59745-541-1_25  0.11
2012 Choi Y, Moody IS, Sims PC, Hunt SR, Corso BL, Perez I, Weiss GA, Collins PG. Single-molecule lysozyme dynamics monitored by an electronic circuit. Science (New York, N.Y.). 335: 319-24. PMID 22267809 DOI: 10.1126/Science.1214824  0.11
2003 Wiedmer T, Zhao J, Nanjundan M, Sims PJ. Palmitoylation of phospholipid scramblase 1 controls its distribution between nucleus and plasma membrane. Biochemistry. 42: 1227-33. PMID 12564925 DOI: 10.1021/Bi026679W  0.109
2005 Chen MH, Ben-Efraim I, Mitrousis G, Walker-Kopp N, Sims PJ, Cingolani G. Phospholipid scramblase 1 contains a nonclassical nuclear localization signal with unique binding site in importin alpha. The Journal of Biological Chemistry. 280: 10599-606. PMID 15611084 DOI: 10.1074/jbc.M413194200  0.109
2013 Sims PC, Moody IS, Choi Y, Dong C, Iftikhar M, Corso BL, Gul OT, Collins PG, Weiss GA. Electronic measurements of single-molecule catalysis by cAMP-dependent protein kinase A. Journal of the American Chemical Society. 135: 7861-8. PMID 23631749 DOI: 10.1021/Ja311604J  0.109
2018 Kiryluk K, Bomback AS, Cheng YL, Xu K, Camara PG, Rabadan R, Sims PA, Barasch J. Precision Medicine for Acute Kidney Injury (AKI): Redefining AKI by Agnostic Kidney Tissue Interrogation and Genetics. Seminars in Nephrology. 38: 40-51. PMID 29291761 DOI: 10.1016/J.Semnephrol.2017.09.006  0.108
2011 O'Cualain RD, Sims PF, Carr CM. Structural analysis of alpha-helical proteins from wool using cysteine labelling and mass spectrometry. International Journal of Biological Macromolecules. 49: 323-30. PMID 21624395 DOI: 10.1016/j.ijbiomac.2011.05.007  0.108
2011 Southworth PM, Hyde JE, Sims PF. A mass spectrometric strategy for absolute quantification of Plasmodium falciparum proteins of low abundance. Malaria Journal. 10: 315. PMID 22027174 DOI: 10.1186/1475-2875-10-315  0.107
2010 Sims PA, Branscum KM, Kao L, Keaveny VR. An inexpensive, relatively green, and rapid method to purify genomic DNA from escherichia coli: An experiment for the undergraduate biochemistry laboratory Journal of Chemical Education. 87: 1113-1115. DOI: 10.1021/ed100237e  0.107
2013 Agarwal M, Nitta R, Dovat S, Li G, Arita H, Narita Y, Fukushima S, Tateishi K, Matsushita Y, Yoshida A, Miyakita Y, Ohno M, Collins VP, Kawahara N, Shibui S, ... ... Sims PA, et al. CELL BIOLOGY AND SIGNALING Neuro-Oncology. 15: iii12-iii31. DOI: 10.1093/Neuonc/Not174  0.106
2010 Suzuki J, Umeda M, Sims PJ, Nagata S. Calcium-dependent phospholipid scrambling by TMEM16F. Nature. 468: 834-8. PMID 21107324 DOI: 10.1038/nature09583  0.106
2020 Arriaga JM, Panja S, Alshalalfa M, Zhao J, Zou M, Giacobbe A, Madubata CJ, Yeji Kim J, Rodriguez A, Coleman I, Virk RK, Hibshoosh H, Ertunc O, Ozbek B, Fountain J, ... ... Sims PA, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer. 1: 1082-1096. PMID 34085047 DOI: 10.1038/s43018-020-00125-0  0.105
2023 Connors TJ, Matsumoto R, Verma S, Szabo PA, Guyer R, Gray J, Wang Z, Thapa P, Dogra P, Poon MML, Rybkina K, Bradley MC, Idzikowski E, McNichols J, Kubota M, ... ... Sims PA, et al. Site-specific development and progressive maturation of human tissue-resident memory T cells over infancy and childhood. Immunity. PMID 37421943 DOI: 10.1016/j.immuni.2023.06.008  0.104
2012 Li D, Yang H, Nan H, Liu P, Pang S, Zhao Q, Karni R, Kamps MP, Xu Y, Zhou J, Wiedmer T, Sims PJ, Wang F. Identification of key regulatory pathways of myeloid differentiation using an mESC-based karyotypically normal cell model. Blood. 120: 4712-9. PMID 23086752 DOI: 10.1182/Blood-2012-03-414979  0.104
2021 Garofano L, Migliozzi S, Oh YT, D'Angelo F, Najac RD, Ko A, Frangaj B, Caruso FP, Yu K, Yuan J, Zhao W, Stefano ALD, Bielle F, Jiang T, Sims P, et al. Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities. Nature Cancer. 2: 141-156. PMID 33681822 DOI: 10.1038/s43018-020-00159-4  0.104
2012 Choi Y, Moody IS, Sims PC, Hunt SR, Corso BL, Seitz DE, Blaszczak LC, Blaszcazk LC, Collins PG, Weiss GA. Single-molecule dynamics of lysozyme processing distinguishes linear and cross-linked peptidoglycan substrates. Journal of the American Chemical Society. 134: 2032-5. PMID 22239748 DOI: 10.1021/Ja211540Z  0.103
2022 Hobson BD, Kong L, Angelo MF, Lieberman OJ, Mosharov EV, Herzog E, Sulzer D, Sims PA. Subcellular and regional localization of mRNA translation in midbrain dopamine neurons. Cell Reports. 38: 110208. PMID 35021090 DOI: 10.1016/j.celrep.2021.110208  0.103
2005 Zhao KW, Li D, Zhao Q, Huang Y, Silverman RH, Sims PJ, Chen GQ. Interferon-alpha-induced expression of phospholipid scramblase 1 through STAT1 requires the sequential activation of protein kinase Cdelta and JNK. The Journal of Biological Chemistry. 280: 42707-14. PMID 16260419 DOI: 10.1074/jbc.M506178200  0.102
2007 Sims PA, Hardin JD. Fluorescence-integrated transmission electron microscopy images: integrating fluorescence microscopy with transmission electron microscopy. Methods in Molecular Biology (Clifton, N.J.). 369: 291-308. PMID 17656756 DOI: 10.1007/978-1-59745-294-6_14  0.102
2022 Spinazzi EF, Argenziano MG, Upadhyayula PS, Banu MA, Neira JA, Higgins DMO, Wu PB, Pereira B, Mahajan A, Humala N, Al-Dalahmah O, Zhao W, Save AV, Gill BJA, Boyett DM, ... ... Sims PA, et al. Chronic convection-enhanced delivery of topotecan for patients with recurrent glioblastoma: a first-in-patient, single-centre, single-arm, phase 1b trial. The Lancet. Oncology. PMID 36243020 DOI: 10.1016/S1470-2045(22)00599-X  0.101
2012 Hoehl MM, Lu PJ, Sims PA, Slocum AH. Rapid and robust detection methods for poison and microbial contamination. Journal of Agricultural and Food Chemistry. 60: 6349-58. PMID 22630610 DOI: 10.1021/Jf300817H  0.101
2008 Haining WN, Davies J, Kanzler H, Drury L, Brenn T, Evans J, Angelosanto J, Rivoli S, Russell K, George S, Sims P, Neuberg D, Li X, Kutok J, Morgan J, et al. CpG oligodeoxynucleotides alter lymphocyte and dendritic cell trafficking in humans. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 14: 5626-34. PMID 18765557 DOI: 10.1158/1078-0432.Ccr-08-0526  0.101
2011 Lott K, Bhardwaj A, Sims PJ, Cingolani G. A minimal nuclear localization signal (NLS) in human phospholipid scramblase 4 that binds only the minor NLS-binding site of importin alpha1. The Journal of Biological Chemistry. 286: 28160-9. PMID 21690087 DOI: 10.1074/jbc.M111.228007  0.097
2014 Kassas A, Moura IC, Yamashita Y, Scheffel J, Guérin-Marchand C, Blank U, Sims PJ, Wiedmer T, Monteiro RC, Rivera J, Charles N, Benhamou M. Regulation of the tyrosine phosphorylation of Phospholipid Scramblase 1 in mast cells that are stimulated through the high-affinity IgE receptor. Plos One. 9: e109800. PMID 25289695 DOI: 10.1371/Journal.Pone.0109800  0.096
2009 Bateman A, Finn RD, Sims PJ, Wiedmer T, Biegert A, Söding J. Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinformatics (Oxford, England). 25: 159-62. PMID 19010806 DOI: 10.1093/Bioinformatics/Btn595  0.096
2003 Kametaka S, Shibata M, Moroe K, Kanamori S, Ohsawa Y, Waguri S, Sims PJ, Emoto K, Umeda M, Uchiyama Y. Identification of phospholipid scramblase 1 as a novel interacting molecule with beta -secretase (beta -site amyloid precursor protein (APP) cleaving enzyme (BACE)). The Journal of Biological Chemistry. 278: 15239-45. PMID 12586838 DOI: 10.1074/jbc.M208611200  0.095
2010 Martin C, Chen S, Heilos D, Sauer G, Hunt J, Shaw AG, Sims PF, Jackson DA, Lovri? J. Changed genome heterochromatinization upon prolonged activation of the Raf/ERK signaling pathway. Plos One. 5: e13322. PMID 20967285 DOI: 10.1371/journal.pone.0013322  0.094
2022 Swaminathan B, Youn SW, Naiche LA, Du J, Villa SR, Metz JB, Feng H, Zhang C, Kopan R, Sims PA, Kitajewski JK. Endothelial Notch signaling directly regulates the small GTPase RND1 to facilitate Notch suppression of endothelial migration. Scientific Reports. 12: 1655. PMID 35102202 DOI: 10.1038/s41598-022-05666-1  0.094
2015 Akhterov MV, Choi Y, Olsen TJ, Sims PC, Iftikhar M, Gul OT, Corso BL, Weiss GA, Collins PG. Observing Lysozyme's Closing and Opening Motions by High-Resolution Single-Molecule Enzymology. Acs Chemical Biology. 10: 1495-501. PMID 25763461 DOI: 10.1021/Cb500750V  0.094
2015 Costello J, Castelli LM, Rowe W, Kershaw CJ, Talavera D, Mohammad-Qureshi SS, Sims PF, Grant CM, Pavitt GD, Hubbard SJ, Ashe MP. Global mRNA selection mechanisms for translation initiation. Genome Biology. 16: 10. PMID 25650959 DOI: 10.1186/S13059-014-0559-Z  0.093
2005 Nzila A, Ward SA, Marsh K, Sims PF, Hyde JE. Comparative folate metabolism in humans and malaria parasites (part II): activities as yet untargeted or specific to Plasmodium. Trends in Parasitology. 21: 334-9. PMID 15936248 DOI: 10.1016/j.pt.2005.05.008  0.092
2012 Holman SW, Sims PF, Eyers CE. The use of selected reaction monitoring in quantitative proteomics. Bioanalysis. 4: 1763-86. PMID 22877222 DOI: 10.4155/bio.12.126  0.092
2018 Liu B, Lee BW, Nakanishi K, Villasante A, Williamson R, Metz J, Kim J, Kanai M, Bi L, Brown K, Di Paolo G, Homma S, Sims PA, Topkara VK, Vunjak-Novakovic G. Cardiac recovery via extended cell-free delivery of extracellular vesicles secreted by cardiomyocytes derived from induced pluripotent stem cells. Nature Biomedical Engineering. 2: 293-303. PMID 30271672 DOI: 10.1038/S41551-018-0229-7  0.091
2016 Pulko V, Davies JS, Martinez C, Lanteri MC, Busch MP, Diamond MS, Knox K, Bush EC, Sims PA, Sinari S, Billheimer D, Haddad EK, Murray KO, Wertheimer AM, Nikolich-Žugich J. Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses. Nature Immunology. PMID 27270402 DOI: 10.1038/Ni.3483  0.09
2020 Szabo PA, Dogra P, Gray JI, Wells SB, Connors TJ, Weisberg SP, Krupska I, Matsumoto R, Poon MML, Idzikowski E, Morris SE, Pasin C, Yates AJ, Ku A, Chait M, ... ... Sims PA, et al. Analysis of respiratory and systemic immune responses in COVID-19 reveals mechanisms of disease pathogenesis. Medrxiv : the Preprint Server For Health Sciences. PMID 33106817 DOI: 10.1101/2020.10.15.20208041  0.09
2006 Sims PF, Hyde JE. Proteomics of the human malaria parasite Plasmodium falciparum. Expert Review of Proteomics. 3: 87-95. PMID 16445353 DOI: 10.1586/14789450.3.1.87  0.09
2008 Hyde JE, Dittrich S, Wang P, Sims PF, de Crécy-Lagard V, Hanson AD. Plasmodium falciparum: a paradigm for alternative folate biosynthesis in diverse microorganisms? Trends in Parasitology. 24: 502-8. PMID 18805734 DOI: 10.1016/j.pt.2008.08.004  0.089
2023 Hobson BD, Stanley AT, De Los Santos MB, Culbertson B, Mosharov EV, Sims PA, Sulzer D. Conserved and cell type-specific transcriptional responses to IFN-γ in the ventral midbrain. Brain, Behavior, and Immunity. PMID 37100211 DOI: 10.1016/j.bbi.2023.04.008  0.087
2012 Kirov A, Al-Hashimi H, Solomon P, Mazur C, Thorpe PE, Sims PJ, Tarantini F, Kumar TK, Prudovsky I. Phosphatidylserine externalization and membrane blebbing are involved in the nonclassical export of FGF1. Journal of Cellular Biochemistry. 113: 956-66. PMID 22034063 DOI: 10.1002/Jcb.23425  0.086
2013 Ory S, Ceridono M, Momboisse F, Houy S, Chasserot-Golaz S, Heintz D, Calco V, Haeberlé AM, Espinoza FA, Sims PJ, Bailly Y, Bader MF, Gasman S. Phospholipid scramblase-1-induced lipid reorganization regulates compensatory endocytosis in neuroendocrine cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 3545-56. PMID 23426682 DOI: 10.1523/JNEUROSCI.3654-12.2013  0.086
2010 O'Cualain RD, Hyde JE, Sims PF. A protein-centric approach for the identification of folate enzymes from the malarial parasite, Plasmodium falciparum, using OFFGEL™ solution-based isoelectric focussing and mass spectrometry. Malaria Journal. 9: 286. PMID 20955557 DOI: 10.1186/1475-2875-9-286  0.086
2024 Haage V, Tuddenham JF, Comandante-Lou N, Bautista A, Monzel A, Chiu R, Fujita M, Garcia FG, Bhattarai P, Patel R, Buonfiglioli A, Idiarte J, Herman M, Rinderspacher A, Mela A, ... ... Sims PA, et al. A pharmacological toolkit for human microglia identifies Topoisomerase I inhibitors as immunomodulators for Alzheimer's disease. Biorxiv : the Preprint Server For Biology. PMID 38370689 DOI: 10.1101/2024.02.06.579103  0.086
2015 Sims JS, Grinshpun B, Feng Y, Ung TH, Neira JA, Samanamud JL, Canoll P, Shen Y, Sims PA, Bruce JN. IMPS-37PRECISION IMMUNOPHENOTYPING OF TCR REPERTOIRES IN IMMUNOTHERAPEUTIC TREATMENT OF GLIOMA Neuro-Oncology. 17: v121.2-v121. DOI: 10.1093/neuonc/nov217.36  0.085
2003 Nanjundan M, Sun J, Zhao J, Zhou Q, Sims PJ, Wiedmer T. Plasma membrane phospholipid scramblase 1 promotes EGF-dependent activation of c-Src through the epidermal growth factor receptor. The Journal of Biological Chemistry. 278: 37413-8. PMID 12871937 DOI: 10.1074/Jbc.M306182200  0.084
2004 Wang P, Wang Q, Aspinall TV, Sims PF, Hyde JE. Transfection studies to explore essential folate metabolism and antifolate drug synergy in the human malaria parasite Plasmodium falciparum. Molecular Microbiology. 51: 1425-38. PMID 14982635 DOI: 10.1111/j.1365-2958.2003.03915.x  0.084
2012 Lu PJ, Hoehl MM, Macarthur JB, Sims PA, Hongshen M, Slocum AH. Robust and economical multi-sample, multi-wavelength UV/vis absorption and fluorescence detector for biological and chemical contamination Aip Advances. 2. DOI: 10.1063/1.4738962  0.084
2011 Castelli LM, Lui J, Campbell SG, Rowe W, Zeef LA, Holmes LE, Hoyle NP, Bone J, Selley JN, Sims PF, Ashe MP. Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated. Molecular Biology of the Cell. 22: 3379-93. PMID 21795399 DOI: 10.1091/mbc.E11-02-0153  0.084
2019 Snyder ME, Finlayson MO, Connors TJ, Dogra P, Senda T, Bush E, Carpenter D, Marboe C, Benvenuto L, Shah L, Robbins H, Hook JL, Sykes M, D'Ovidio F, Bacchetta M, ... ... Sims PA, et al. Generation and persistence of human tissue-resident memory T cells in lung transplantation. Science Immunology. 4. PMID 30850393 DOI: 10.1126/Sciimmunol.Aav5581  0.083
2010 Wang P, Wang Q, Yang Y, Coward JK, Nzila A, Sims PF, Hyde JE. Characterisation of the bifunctional dihydrofolate synthase-folylpolyglutamate synthase from Plasmodium falciparum; a potential novel target for antimalarial antifolate inhibition. Molecular and Biochemical Parasitology. 172: 41-51. PMID 20350571 DOI: 10.1016/J.Molbiopara.2010.03.012  0.083
2014 Simpson CE, Lui J, Kershaw CJ, Sims PF, Ashe MP. mRNA localization to P-bodies in yeast is bi-phasic with many mRNAs captured in a late Bfr1p-dependent wave. Journal of Cell Science. 127: 1254-62. PMID 24424022 DOI: 10.1242/jcs.139055  0.082
2007 Lu B, Sims PJ, Wiedmer T, Moser AH, Shigenaga JK, Grunfeld C, Feingold KR. Expression of the phospholipid scramblase (PLSCR) gene family during the acute phase response. Biochimica Et Biophysica Acta. 1771: 1177-85. PMID 17590392 DOI: 10.1016/J.Bbalip.2007.05.002  0.081
2010 Read M, Müller IB, Mitchell SL, Sims PF, Hyde JE. Dynamic subcellular localization of isoforms of the folate pathway enzyme serine hydroxymethyltransferase (SHMT) through the erythrocytic cycle of Plasmodium falciparum. Malaria Journal. 9: 351. PMID 21129192 DOI: 10.1186/1475-2875-9-351  0.081
2015 Choi HJ, Lui A, Ogony J, Jan R, Sims PJ, Lewis-Wambi J. Targeting interferon response genes sensitizes aromatase inhibitor resistant breast cancer cells to estrogen-induced cell death. Breast Cancer Research : Bcr. 17: 6. PMID 25588716 DOI: 10.1186/s13058-014-0506-7  0.08
2016 Charych DH, Hoch U, Langowski JL, Lee SR, Addepalli MK, Kirk PB, Sheng D, Liu X, Sims PW, VanderVeen LA, Ali CF, Chang TK, Konakova M, Pena RL, Kanhere RS, et al. NKTR-214, an Engineered Cytokine with Biased IL2 Receptor Binding, Increased Tumor Exposure, and Marked Efficacy in Mouse Tumor Models. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 22: 680-90. PMID 26832745 DOI: 10.1158/1078-0432.CCR-15-1631  0.079
2007 Wang P, Wang Q, Sims PF, Hyde JE. Characterisation of exogenous folate transport in Plasmodium falciparum. Molecular and Biochemical Parasitology. 154: 40-51. PMID 17509698 DOI: 10.1016/j.molbiopara.2007.04.002  0.078
2007 Mutch DM, O'Maille G, Wikoff WR, Wiedmer T, Sims PJ, Siuzdak G. Mobilization of pro-inflammatory lipids in obese Plscr3-deficient mice. Genome Biology. 8: R38. PMID 17355638 DOI: 10.1186/Gb-2007-8-3-R38  0.078
2004 Wiedmer T, Zhao J, Li L, Zhou Q, Hevener A, Olefsky JM, Curtiss LK, Sims PJ. Adiposity, dyslipidemia, and insulin resistance in mice with targeted deletion of phospholipid scramblase 3 (PLSCR3). Proceedings of the National Academy of Sciences of the United States of America. 101: 13296-301. PMID 15328404 DOI: 10.1073/Pnas.0405354101  0.077
2019 Hobson BD, Sims PA. Critical Analysis of Particle Detection Artifacts in Synaptosome Flow Cytometry. Eneuro. PMID 31118205 DOI: 10.1523/ENEURO.0009-19.2019  0.077
2023 Matsumoto R, Gray J, Rybkina K, Oppenheimer H, Levy L, Friedman LM, Khamaisi M, Meng W, Rosenfeld AM, Guyer RS, Bradley MC, Chen D, Atkinson MA, Brusko TM, Brusko M, ... ... Sims PA, et al. Induction of bronchus-associated lymphoid tissue is an early life adaptation for promoting human B cell immunity. Nature Immunology. PMID 37460638 DOI: 10.1038/s41590-023-01557-3  0.077
2002 Sun J, Nanjundan M, Pike LJ, Wiedmer T, Sims PJ. Plasma membrane phospholipid scramblase 1 is enriched in lipid rafts and interacts with the epidermal growth factor receptor. Biochemistry. 41: 6338-45. PMID 12009895 DOI: 10.1021/Bi025610L  0.077
2013 Mauk M, Sims P, Rand J, Barnett A. Thin Silicon Solar Cells Solar Cells. 115-156. DOI: 10.1016/B978-0-12-386964-7.00006-8  0.077
2010 Taylor EJ, Campbell SG, Griffiths CD, Reid PJ, Slaven JW, Harrison RJ, Sims PF, Pavitt GD, Delneri D, Ashe MP. Fusel alcohols regulate translation initiation by inhibiting eIF2B to reduce ternary complex in a mechanism that may involve altering the integrity and dynamics of the eIF2B body. Molecular Biology of the Cell. 21: 2202-16. PMID 20444979 DOI: 10.1091/Mbc.E09-11-0962  0.075
2005 Nzila A, Ward SA, Marsh K, Sims PF, Hyde JE. Comparative folate metabolism in humans and malaria parasites (part I): pointers for malaria treatment from cancer chemotherapy. Trends in Parasitology. 21: 292-8. PMID 15922251 DOI: 10.1016/j.pt.2005.04.002  0.074
2019 Louis ED, Kerridge CA, Chatterjee D, Martuscello RT, Diaz DT, Koeppen AH, Kuo SH, Vonsattel JG, Sims PA, Faust PL. Contextualizing the pathology in the essential tremor cerebellar cortex: a patholog-omics approach. Acta Neuropathologica. PMID 31317229 DOI: 10.1007/S00401-019-02043-7  0.071
2004 Giddings KS, Zhao J, Sims PJ, Tweten RK. Human CD59 is a receptor for the cholesterol-dependent cytolysin intermedilysin. Nature Structural & Molecular Biology. 11: 1173-8. PMID 15543155 DOI: 10.1038/Nsmb862  0.07
2022 Kenchappa RS, Dovas A, Argenziano MG, Meyer CT, Stopfer LE, Banu MA, Pereira B, Griffith J, Mohammad A, Talele S, Haddock A, Zarco N, Elmquist W, White F, Quaranta V, ... Sims P, et al. Activation of STAT3 through combined SRC and EGFR signaling drives resistance to a mitotic kinesin inhibitor in glioblastoma. Cell Reports. 39: 110991. PMID 35732128 DOI: 10.1016/j.celrep.2022.110991  0.07
2015 Witkowski J, Sims PA, Strelnikova NI, Williams DM. Entogoniopsis gen. nov. and Trilamina gen. nov. (Bacillariophyta): A survey of multipolar pseudocellate diatoms with internal costae, including comments on the genus Sheshukovia Gleser Phytotaxa. 209: 1-89. DOI: 10.11646/Phytotaxa.209.1.1  0.069
2022 Hobson BD, Choi SJ, Mosharov EV, Soni RK, Sulzer D, Sims P. Subcellular proteomics of dopamine neurons in the mouse brain. Elife. 11. PMID 35098924 DOI: 10.7554/eLife.70921  0.069
2005 Salcedo E, Sims PF, Hyde JE. A glycine-cleavage complex as part of the folate one-carbon metabolism of Plasmodium falciparum. Trends in Parasitology. 21: 406-11. PMID 16039160 DOI: 10.1016/j.pt.2005.07.001  0.068
2010 Nilse L, Sturm M, Trudgian D, Salek M, Sims PFG, Carroll KM, Hubbard SJ. SILACAnalyzer - A tool for differential quantitation of stable isotope derived data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6160: 45-55. DOI: 10.1007/978-3-642-14571-1_4  0.067
2011 Chen CW, Sowden M, Zhao Q, Wiedmer T, Sims PJ. Nuclear phospholipid scramblase 1 prolongs the mitotic expansion of granulocyte precursors during G-CSF-induced granulopoiesis. Journal of Leukocyte Biology. 90: 221-33. PMID 21447647 DOI: 10.1189/Jlb.0111006  0.067
2013 Moody IS, Choi Y, Olsen TJ, Sims PC, Collins PG, Weiss GA. Dissecting lysozyme by single-molecule techniques Lysozymes: Sources, Functions and Role in Disease. 193-213.  0.066
2015 Gallagher JD, Senaratne CL, Sims P, Aoki T, Menéndez J, Kouvetakis J. Electroluminescence from GeSn heterostructure pin diodes at the indirect to direct transition Applied Physics Letters. 106. DOI: 10.1063/1.4913688  0.065
2021 Bayin NS, Mizrak D, Stephen DN, Lao Z, Sims PA, Joyner AL. Injury-induced ASCL1 expression orchestrates a transitory cell state required for repair of the neonatal cerebellum. Science Advances. 7: eabj1598. PMID 34878841 DOI: 10.1126/sciadv.abj1598  0.065
2007 George B, Sims P, McLean AN, Mayer D. Discovering your authentic leadership. Harvard Business Review. 85: 129-30, 132-8, 157. PMID 17345686  0.065
2015 Xu C, Gallagher JD, Wallace PM, Senaratne CL, Sims P, Menéndez J, Kouvetakis J. In situ low temperature As-doping of Ge films using As(SiH3)3 and As(GeH3)3: Fundamental properties and device prototypes Semiconductor Science and Technology. 30. DOI: 10.1088/0268-1242/30/10/105028  0.064
2022 Chait M, Yilmaz MM, Shakil S, Ku AW, Dogra P, Connors TJ, Szabo PA, Gray JI, Wells SB, Kubota M, Matsumoto R, Poon MM, Snyder ME, Baldwin MR, Sims PA, et al. Immune and epithelial determinants of age-related risk and alveolar injury in fatal COVID-19. Jci Insight. PMID 35446789 DOI: 10.1172/jci.insight.157608  0.064
2013 Kodigepalli KM, Anur P, Spellman P, Sims PJ, Nanjundan M. Phospholipid Scramblase 1, an interferon-regulated gene located at 3q23, is regulated by SnoN/SkiL in ovarian cancer cells. Molecular Cancer. 12: 32. PMID 23621864 DOI: 10.1186/1476-4598-12-32  0.063
2018 Rabadan R, Sims PA. Editorial overview: Genomics and epigenomics Current Opinion in Systems Biology. 7: vi. DOI: 10.1016/J.Coisb.2018.02.001  0.062
2002 Christian SL, Sims PV, Gold MR. The B cell antigen receptor regulates the transcriptional activator beta-catenin via protein kinase C-mediated inhibition of glycogen synthase kinase-3. Journal of Immunology (Baltimore, Md. : 1950). 169: 758-69. PMID 12097378  0.06
2013 Sims PG. Preoperative, intraoperative, and postoperative anesthesia assessment and monitoring in oral surgery. Oral and Maxillofacial Surgery Clinics of North America. 25: 367-71, v. PMID 23706930 DOI: 10.1016/j.coms.2013.03.007  0.06
2013 Sims PE, Chizmeshya AV, Jiang L, Beeler RT, Poweleit CD, Gallagher J, Smith DJ, Menéndez J, Kouvetakis J. Rational design of monocrystalline (InP)(y)Ge(5-2y)/Ge/Si(100) semiconductors: synthesis and optical properties. Journal of the American Chemical Society. 135: 12388-99. PMID 23899409 DOI: 10.1021/Ja405726B  0.057
2006 Sims PA, Menefee AL, Larsen TM, Mansoorabadi SO, Reed GH. Structure and catalytic properties of an engineered heterodimer of enolase composed of one active and one inactive subunit. Journal of Molecular Biology. 355: 422-31. PMID 16309698 DOI: 10.1016/J.Jmb.2005.10.050  0.056
2006 Wang Q, Hauser V, Read M, Wang P, Hanson AD, Sims PF, Hyde JE. Functional identification of orthologous genes encoding pterin recycling activity in Plasmodium falciparum and Toxoplasma gondii. Molecular and Biochemical Parasitology. 146: 109-12. PMID 16337017 DOI: 10.1016/j.molbiopara.2005.11.002  0.055
2012 Xia D, Ghali F, Gaskell SJ, O'Cualain R, Sims PF, Jones AR. Software for analysing ion mobility mass spectrometry data to improve peptide identification. Proteomics. 12: 1912-6. PMID 22623287 DOI: 10.1002/pmic.201200029  0.055
2015 Xu C, Gallagher JD, Sims P, Smith DJ, Menéndez J, Kouvetakis J. Non-conventional routes to SiGe:P/Si(100) materials and devices based on -SiH3 and -GeH3 derivatives of phosphorus: Synthesis, electrical performance and optical behavior Semiconductor Science and Technology. 30. DOI: 10.1088/0268-1242/30/4/045007  0.055
2013 Cruthirds D, Sims PJ, Louis PJ. Review and recommendations for the prevention, management, and treatment of postoperative and postdischarge nausea and vomiting. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. 115: 601-11. PMID 23313231 DOI: 10.1016/j.oooo.2012.09.088  0.055
2022 Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, ... ... Sims P, et al. Publisher Correction: ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma. Nature Cancer. PMID 35149861 DOI: 10.1038/s43018-022-00343-8  0.052
2016 Kuo SH, Lin CY, Wang J, Sims PA, Pan MK, Liou JY, Lee D, Tate WJ, Kelly GC, Louis ED, Faust PL. Climbing fiber-Purkinje cell synaptic pathology in tremor and cerebellar degenerative diseases. Acta Neuropathologica. PMID 27704282 DOI: 10.1007/S00401-016-1626-1  0.051
2014 Corso BL, Perez I, Sheps T, Sims PC, Gül OT, Collins PG. Electrochemical charge-transfer resistance in carbon nanotube composites. Nano Letters. 14: 1329-36. PMID 24527984 DOI: 10.1021/Nl404349G  0.051
2014 Waits J, Cretton-Scott E, Childers NK, Sims PJ. Pediatric psychopharmacology and local anesthesia: potential adverse drug reactions with vasoconstrictor use in dental practice. Pediatric Dentistry. 36: 18-23. PMID 24717703  0.049
2013 Thomas LM, Harper AR, Miner WA, Ajufo HO, Branscum KM, Kao L, Sims PA. Structure of Escherichia coli AdhP (ethanol-inducible dehydrogenase) with bound NAD. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 730-2. PMID 23832197 DOI: 10.1107/S1744309113015170  0.045
2002 Thun D, Sims PL, Adams MA, Webb T. Effects of group therapy on female adolescent survivors of sexual abuse: a pilot study. Journal of Child Sexual Abuse. 11: 1-16. PMID 16221650  0.041
1998 Sims P, Wang P, Hyde JE. On ;the efficacy of antifolate antimalarial combinations in Africa'. Parasitology Today (Personal Ed.). 14: 136-7. PMID 17040729  0.04
2007 Sims PJ, Sims KM. Drug interactions important for periodontal therapy. Periodontology 2000. 44: 15-28. PMID 17474923 DOI: 10.1111/j.1600-0757.2006.00195.x  0.04
2015 Qiu W, Tang SM, Lee S, Turk AT, Sireci AN, Qiu A, Rose C, Xie C, Kitajewski J, Wen HJ, Crawford HC, Sims PA, Hruban RH, Remotti HE, Su GH. Loss of Activin Receptor Type 1B Accelerates Development of Intraductal Papillary Mucinous Neoplasms in Mice With Activated KRAS. Gastroenterology. PMID 26408346 DOI: 10.1053/J.Gastro.2015.09.013  0.04
2011 Sims PA, O'Mealey GB, Khan NA, Larabee CM. Design for a simple and inexpensive cylinder-within-a-cylinder gradient maker for the undergraduate biochemistry laboratory Journal of Chemical Education. 88: 508-509. DOI: 10.1021/ed1008427  0.04
2013 Choi Y, Sims PC, Olsen T, Gul OT, Corso BL, Iftikhar M, Weiss GA, Collins PG. Single molecule enzymology using carbon nanotube circuits 2013 Transducers and Eurosensors Xxvii: the 17th International Conference On Solid-State Sensors, Actuators and Microsystems, Transducers and Eurosensors 2013. 633-636. DOI: 10.1109/Transducers.2013.6626846  0.039
2013 Potts KJ, Butterfield DT, Sims P, Henderson M, Shames CB. Cost savings associated with an education campaign on the diagnosis and management of sleep-disordered breathing: a retrospective, claims-based US study. Population Health Management. 16: 7-13. PMID 22823227 DOI: 10.1089/pop.2011.0102  0.039
2013 Jiang L, Sims PE, Grzybowski G, Beeler RT, Chizmeshya AVG, Smith DJ, Kouvetakis J, Menéndez J. Nanoscale assembly of silicon-like [Al(As1-xNx)] ySi5-2y alloys: Fundamental theoretical and experimental studies of structural and optical properties Physical Review B - Condensed Matter and Materials Physics. 88. DOI: 10.1103/Physrevb.88.045208  0.039
2015 Gallagher JD, Senaratne CL, Xu C, Sims P, Aoki T, Smith DJ, Menéndez J, Kouvetakis J. Non-radiative recombination in Ge1-ySny light emitting diodes: The role of strain relaxation in tuned heterostructure designs Journal of Applied Physics. 117. DOI: 10.1063/1.4923060  0.038
2011 Sims PA. Reply to "spreadsheet enhancement to calculating the p i of proteins" Journal of Chemical Education. 88: 142. DOI: 10.1021/ed1010129  0.038
2012 Sims PA. Use of a spreadsheet to help students understand the origin of the empirical equation that allows estimation of the extinction coefficients of proteins Journal of Chemical Education. 89: 738-742. DOI: 10.1021/ed200600d  0.038
2011 Azem W, Candler J, Galvan J, Kapila M, Dunlop J, Fastovets A, Ige A, Kotochigov E, Nicodano C, Sealy I, Sims P. Technology for environmental advances Oilfield Review. 23: 44-52.  0.037
2010 Sims P. The next-generation separator: Changing the rules Oilfield Review. 22: 50-54.  0.035
2009 Sims PA. Observations on the genera centroporus pantocsek and tschestnovia pantocsek Diatom Research. 24: 405-414.  0.035
2010 Sims PA. Use of a spreadsheet to calculate the net charge of peptides and proteins as a function of pH: An alternative to using "canned" programs to estimate the isoelectric point of these important biomolecules Journal of Chemical Education. 87: 803-808. DOI: 10.1021/ed100232j  0.034
2012 Sims PA, Witkowski J. Generic limits within the Eupodiscaceae: I. Observations on three unusual species of Cerataulus, with reference to the type species, C. turgidus Diatom Research. 27: 223-236. DOI: 10.1080/0269249X.2012.720613  0.034
2012 Sims PQ, Vaughn R, Hung SK, Würsig B. Sounds of Indo-Pacific humpback dolphins (Sousa chinensis) in West Hong Kong: a preliminary description. The Journal of the Acoustical Society of America. 131: EL48-53. PMID 22280729 DOI: 10.1121/1.3663281  0.032
2009 Sims PA. An "aufbau" approach to understanding how the King-Altman method of deriving rate equations for enzyme-catalyzed reactions works Journal of Chemical Education. 86: 385-389. DOI: 10.1021/ed086p385  0.032
2004 Sims P. How the poor die in the settlements of Port Moresby, 2003-2004. Papua and New Guinea Medical Journal. 47: 192-201. PMID 16862943  0.03
2012 Khan ZA, Behera BK, Kumar V, Sims P. Solving the challenges of time, temperature and pressure World Oil. 233: 75-77.  0.028
2005 Temple V, Mapira P, Adeniyi K, Sims P. Iodine deficiency in Papua New Guinea (sub-clinical iodine deficiency and salt iodization in the highlands of Papua New Guinea). Journal of Public Health (Oxford, England). 27: 45-8. PMID 15564273 DOI: 10.1093/pubmed/fdh199  0.028
2015 Xu C, Gallagher JD, Senaratne CL, Sims PE, Kouvetakis J, Menéndez J. CMOS compatible in-situ n-type doping of ge using new generation doping agents P(MH3)3 and As(MH3)3 (M=Si, Ge) Ecs Transactions. 69: 3-15. DOI: 10.1149/06914.0003ecst  0.028
2014 Clark P, Sims PL. The Practice of Fee Setting and Collection: Implications for Clinical Training Programs American Journal of Family Therapy. 42: 386-397. DOI: 10.1080/01926187.2013.857914  0.028
2011 Polley HW, Phillips RL, Frank AB, Bradford JA, Sims PL, Morgan JA, Kiniry JR. Variability in Light-Use Efficiency for Gross Primary Productivity on Great Plains Grasslands Ecosystems. 14: 15-27. DOI: 10.1007/s10021-010-9389-3  0.027
2002 Sims P. NHS direct--a new paradigm of medical care. Journal of Public Health Medicine. 24: 70. PMID 11939388  0.026
2014 Sims PA. "Big-picture" worksheets to help students learn and understand the pentose phosphate pathway and the Calvin cycle Journal of Chemical Education. 91: 541-545. DOI: 10.1021/ed300898c  0.026
2013 Finn CA, Sims PK. Signs from the Precambrian: The Geologic Framework of Rocky Mountain Region Derived From Aeromagnetic Data The Rocky Mountain Region: An Evolving Lithosphere: Tectonics, Geochemistry, and Geophysics. 39-54. DOI: 10.1029/154GM04  0.025
2003 Sims PA. Papua New Guinea needs law and order above all. Bmj (Clinical Research Ed.). 326: 165. PMID 12531860  0.025
2013 Jackson BR, Krasowski MD, Sims PJ. Laboratory diagnostic oversight committees and the profession of laboratory medicine. American Journal of Clinical Pathology. 139: 273-4. PMID 23429362 DOI: 10.1309/AJCPYK7EKWDCBTJC  0.024
2014 Campbell R, Allan S, Sims P. Service attachment: the relative contributions of ward climate perceptions and attachment anxiety and avoidance in male inpatients with psychosis. Criminal Behaviour and Mental Health : Cbmh. 24: 49-59. PMID 24014501 DOI: 10.1002/cbm.1880  0.023
2012 Sims PG, Kates CH, Moyer DJ, Rollert MK, Todd DW. Anesthesia in outpatient facilities. Journal of Oral and Maxillofacial Surgery : Official Journal of the American Association of Oral and Maxillofacial Surgeons. 70: e31-49. PMID 23128005 DOI: 10.1016/j.joms.2012.07.030  0.021
2003 Sims P. Medical education--front page news in Papua New Guinea. The British Journal of General Practice : the Journal of the Royal College of General Practitioners. 53: 817. PMID 14989249  0.02
2011 Sims PA. Amino acid crossword puzzle Journal of Chemical Education. 88: 434-436. DOI: 10.1021/ed100780n  0.02
2012 Avant C, Daungkaew S, Behera BK, Danpanich S, Laprabang W, De Santo I, Heath G, Osman K, Khan ZA, Russell J, Sims P, Slapal M, Tevis C. Testing the limits in extreme well conditions Oilfield Review. 24: 4-19.  0.019
2004 Lavu EK, Kutson N, Connie C, Tau G, Sims P. Total lymphocyte counts in adult HIV/AIDS patients in Port Moresby General Hospital. Papua and New Guinea Medical Journal. 47: 31-8. PMID 16496513  0.019
2008 Sims P, Stavitsky G. George Inness in Montclair New York Review of Books. 55.  0.019
2021 Affo S, Nair A, Brundu F, Ravichandra A, Bhattacharjee S, Matsuda M, Chin L, Filliol A, Wen W, Song X, Decker A, Worley J, Caviglia JM, Yu L, Yin D, ... ... Sims P, et al. Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations. Cancer Cell. 39: 883. PMID 34129825 DOI: 10.1016/j.ccell.2021.05.010  0.019
2015 Sims P, Aoki T, Menéndez J, Kouvetakis J. Crystalline tetrahedral phases Al1-xBxPSi3 and Al1-xBxAsT3 (T = Si, Ge) Via Reactions of Al(BH4)3 and M(TH3)3 (M = P, As) Ecs Transactions. 69: 83-93. DOI: 10.1149/06914.0083ecst  0.018
2007 Sims PA, Crawford RM. The fossil diatom genus Truania pantocsek and its relationship with Ellerbeckia Crawford Diatom Research. 22: 197-207.  0.018
2015 Senaratne CL, Gallagher JD, Xu C, Sims PE, Menéndez J, Kouvetakis J. Doping of direct gap Ge1-ySny Alloys to attain electroluminescence and enhanced photoluminescence Ecs Transactions. 69: 157-164. DOI: 10.1149/06914.0157ecst  0.017
2007 Sims PJ. A study on video over IP and the effects on FTTx architectures Globecom - Ieee Global Telecommunications Conference. DOI: 10.1109/GLOCOMW.2007.4437840  0.017
2009 Crawford RM, Sims PA. Anuloplicata (gleser) gleser, its species and relationships with ellerbeckia crawford and truania pantocsek within the radialiplicataceae gleser and moisseeva Diatom Research. 24: 253-272.  0.015
2015 Sims P, Aoki T, Favaro R, Wallace P, White A, Xu C, Menendez J, Kouvetakis J. Crystalline (Al1-xBx)PSi3 and (Al1-xBx)AsSi3 tetrahedral phases via reactions of Al(BH4)3 and M(SiH3)3 (M = P, As) Chemistry of Materials. 27: 3030-3039. DOI: 10.1021/Acs.Chemmater.5B00412  0.015
2003 Sims PA. Working with metaphor. American Journal of Psychotherapy. 57: 528-36. PMID 14735878  0.014
2010 Bednarik RG, Andrews G, Cameron S, Sims PC, Williams C, Bednarik E. The elusive Meenamatta petroglyphs, Tasmania: Comment on Jo Field's and Peter D. McIntosh's 'A re-evaluation of 'petroglyphs' on Blue Tier, northeast Tasmania' Australian Archaeology. 70: 86-87.  0.014
2010 Polley HW, Emmerich W, Bradford JA, Sims PL, Johnson DA, Saliendra NZ, Svejcar T, Angell R, Frank AB, Phillips RL, Snyder KA, Morgan JA. Physiological and environmental regulation of interannual variability in CO2 exchange on rangelands in the western United States Global Change Biology. 16: 990-1002. DOI: 10.1111/j.1365-2486.2009.01966.x  0.011
2014 Sims PL, Garrison S. Childhood Sexual Abuse and Intimate Relationships: A Support Group for Male Partners Contemporary Family Therapy. 36: 17-24. DOI: 10.1007/s10591-013-9293-z  0.01
2012 Carlson ER, Sims PG. Preface to the fifth edition. AAOMS Parameters of Care 2012. Journal of Oral and Maxillofacial Surgery : Official Journal of the American Association of Oral and Maxillofacial Surgeons. 70: e1-11. PMID 23127997 DOI: 10.1016/j.joms.2012.08.013  0.01
2012 Sims P. U.S. Navy world war II war damage reports Marine Technology Society Journal. 46: 49-60. DOI: 10.4031/MTSJ.46.6.3  0.01
2010 Polley HW, Emmerich W, Bradford JA, Sims PL, Johnson DA, Saliendra NZ, Svejcar T, Angell R, Frank AB, Phillips RL, Snyder KA, Morgan JA, Sanabria J, Mielnick PC, Dugas WA. Precipitation regulates the response of net ecosystem CO2 exchange to environmental variation on united states rangelands Rangeland Ecology and Management. 63: 176-186. DOI: 10.2111/REM-D-09-00015.1  0.01
2010 Bednarik RG, Andrews G, Cameron S, Sims PC, Bednarik E. The contested Meenamatta petroglyphs, Tasmania Rock Art Research. 27: 251-256.  0.01
2010 Sims P, Moyer J, Gatto S. The decay of the Andrea Doria Journal of Ship Production. 26: 187-198.  0.01
2009 Sims PK. The trans-Rocky Mountain fault system-A fundamental precambrian strike-slip system Us Geological Survey Circular. 1-21.  0.01
2009 Sims P. Thermal oxidars Pollution Engineering. 41: 32-34.  0.01
2008 Svejcar T, Angell R, Bradford JA, Dugas W, Emmerich W, Frank AB, Gilmanov T, Haferkamp M, Johnson DA, Mayeux H, Mielnick P, Morgan J, Saliendra NZ, Schuman GE, Sims PL, et al. Carbon fluxes on North American rangelands Rangeland Ecology and Management. 61: 465-474. DOI: 10.2111/07-108.1  0.01
2008 Sims PA. Ceratangula gen. nov. is proposed together with a discussion on the genera Cerataulus, Eupodiscus, Amphitetras, Amphipentas and Diommatetras Diatom Research. 23: 435-444.  0.01
2007 Hinton WJ, Sims PL, Adams MA, West C. Juvenile justice: A system divided Criminal Justice Policy Review. 18: 466-483. DOI: 10.1177/0887403407304578  0.01
2007 Sims P. Bulging merchant ships Naval Engineers Journal. 119: 53-65. DOI: 10.1111/j.1559-3584.2007.00068.x  0.01
2007 Sims P. Thermal oxidizers aid in pollution control Hydrocarbon Processing. 86: 69-70.  0.01
2007 Sims P. Keep the heat, lose the buildup Pollution Engineering. 39: 58-63.  0.01
2007 Crawford RM, Sims PA. Ellerbeckia Baileyi (H.L. Smith) Crawford and Sims comb. nov.: Typification and frustule morphology of rare freshwater fossil diatom Diatom Research. 22: 17-26.  0.01
2007 Sims P. RTOs the media matters Finishing Today. 83: 32-35.  0.01
2002 Sims P. All passion spent. Ageism and public health--a view from the south-west Pacific. The British Journal of General Practice : the Journal of the Royal College of General Practitioners. 52: 261. PMID 12030686  0.01
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