Edward M. Marcotte, Ph.D. - Publications

2001- Chemistry and Biochemistry, Molecular Biosciences University of Texas at Austin, Austin, Texas, U.S.A. 
proteomics, bioinformatics, systems biology

182 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 McWhite CD, Papoulas O, Drew K, Dang V, Leggere JC, Sae-Lee W, Marcotte EM. Co-fractionation/mass spectrometry to identify protein complexes. Star Protocols. 2: 100370. PMID 33748783 DOI: 10.1016/j.xpro.2021.100370  0.32
2021 Floyd BM, Drew K, Marcotte EM. Systematic Identification of Protein Phosphorylation-Mediated Interactions. Journal of Proteome Research. 20: 1359-1370. PMID 33476154 DOI: 10.1021/acs.jproteome.0c00750  0.36
2020 Drew K, Lee C, Cox RM, Dang V, Devitt CC, McWhite CD, Papoulas O, Huizar RL, Marcotte EM, Wallingford JB. A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery. Developmental Biology. PMID 32898505 DOI: 10.1016/j.ydbio.2020.08.008  0.32
2020 Boulgakov AA, Ellington AD, Marcotte EM. Bringing Microscopy-By-Sequencing into View: (Trends in Biotechnology 38, 154-162, 2020). Trends in Biotechnology. 38: 935. PMID 32673590 DOI: 10.1016/j.tibtech.2020.01.007  0.92
2020 Boulgakov AA, Moor SR, Jo HH, Metola P, Joyce LA, Marcotte E, Welch CJ, Anslyn EV. Next-Generation TLC: A Quantitative Platform for Parallel Spotting and Imaging. The Journal of Organic Chemistry. PMID 32559382 DOI: 10.1021/acs.joc.0c00349  0.8
2020 Garge RK, Laurent JM, Kachroo AH, Marcotte EM. Systematic Humanization of the Yeast Cytoskeleton Discerns Functionally Replaceable from Divergent Human Genes. Genetics. PMID 32522745 DOI: 10.1534/genetics.120.303378  0.48
2020 Laurent JM, Garge RK, Teufel AI, Wilke CO, Kachroo AH, Marcotte EM. Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs. Plos Biology. 18: e3000627. PMID 32421706 DOI: 10.1371/journal.pbio.3000627  0.48
2020 Howard CJ, Floyd BM, Bardo AM, Swaminathan J, Marcotte EM, Anslyn EV. Solid-Phase Peptide Capture and Release for Bulk and Single-Molecule Proteomics. Acs Chemical Biology. PMID 32363853 DOI: 10.1021/acschembio.0c00040  0.44
2020 McWhite CD, Papoulas O, Drew K, Cox RM, June V, Dong OX, Kwon T, Wan C, Salmi ML, Roux SJ, Browning KS, Chen ZJ, Ronald PC, Marcotte EM. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. Cell. PMID 32191846 DOI: 10.1016/j.cell.2020.02.049  0.32
2019 Bachman JL, Pavlich CI, Boley AJ, Marcotte EM, Anslyn EV. Synthesis of Carboxy ATTO 647N Using Redox Cycling for Xanthone Access. Organic Letters. PMID 31825225 DOI: 10.1021/acs.orglett.9b03981  0.36
2019 Kim JJ, Lee SY, Gong F, Battenhouse AM, Boutz DR, Bashyal A, Refvik ST, Chiang CM, Xhemalce B, Paull TT, Brodbelt JS, Marcotte EM, Miller KM. Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity. Genes & Development. PMID 31753913 DOI: 10.1101/gad.331231.119  0.88
2019 Boulgakov AA, Ellington AD, Marcotte EM. Bringing Microscopy-By-Sequencing into View. Trends in Biotechnology. PMID 31416630 DOI: 10.1016/j.tibtech.2019.06.001  0.92
2018 Huizar RL, Lee C, Boulgakov AA, Horani A, Tu F, Marcotte EM, Brody SL, Wallingford JB. A liquid-like organelle at the root of motile ciliopathy. Elife. 7. PMID 30561330 DOI: 10.7554/eLife.38497  0.8
2018 Teufel AI, Johnson MM, Laurent JM, Kachroo AH, Marcotte EM, Wilke CO. The many nuanced evolutionary consequences of duplicated genes. Molecular Biology and Evolution. PMID 30445614 DOI: 10.1093/molbev/msy216  0.48
2018 Teufel AI, Johnson MM, Laurent JM, Kachroo AH, Marcotte EM, Wilke CO. The many nuanced evolutionary consequences of duplicated genes. Molecular Biology and Evolution. PMID 30428072 DOI: 10.1093/molbev/msy210  0.48
2018 Hwang S, Kim CY, Yang S, Kim E, Hart T, Marcotte EM, Lee I. HumanNet v2: human gene networks for disease research. Nucleic Acids Research. PMID 30418591 DOI: 10.1093/nar/gky1126  0.52
2018 Swaminathan J, Boulgakov AA, Hernandez ET, Bardo AM, Bachman JL, Marotta J, Johnson AM, Anslyn EV, Marcotte EM. Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures. Nature Biotechnology. PMID 30346938 DOI: 10.1038/nbt.4278  0.8
2018 Akhmetov A, Ellington AD, Marcotte EM. A highly parallel strategy for storage of digital information in living cells. Bmc Biotechnology. 18: 64. PMID 30333005 DOI: 10.1186/s12896-018-0476-4  0.92
2018 Sun X, Boulgakov AA, Smith LN, Metola P, Marcotte EM, Anslyn EV. Photography Coupled with Self-Propagating Chemical Cascades: Differentiation and Quantitation of G- and V-Nerve Agent Mimics via Chromaticity. Acs Central Science. 4: 854-861. PMID 30062113 DOI: 10.1021/acscentsci.8b00193  0.8
2018 Akhmetov A, Laurent JM, Gollihar J, Gardner EC, Garge RK, Ellington AD, Kachroo AH, Marcotte EM. Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9. Bio-Protocol. 8. PMID 29770349 DOI: 10.21769/BioProtoc.2765  0.92
2017 Hernandez ET, Swaminathan J, Marcotte EM, Anslyn EV. Solution-phase and solid-phase sequential, selective modification of side chains in KDYWEC and KDYWE as models for usage in single-molecule protein sequencing. New Journal of Chemistry = Nouveau Journal De Chimie. 41: 462-469. PMID 28983186 DOI: 10.1039/C6NJ02932A  0.44
2017 Kachroo AH, Laurent JM, Akhmetov A, Szilagyi-Jones M, McWhite CD, Zhao A, Marcotte EM. Systematic bacterialization of yeast genes identifies a near-universally swappable pathway. Elife. 6. PMID 28661399 DOI: 10.7554/eLife.25093  0.88
2017 Drew K, Lee C, Huizar RL, Tu F, Borgeson B, McWhite CD, Ma Y, Wallingford JB, Marcotte EM. Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes. Molecular Systems Biology. 13: 932. PMID 28596423  0.32
2017 Lee T, Hwang S, Kim CY, Shim H, Kim H, Ronald PC, Marcotte EM, Lee I. WheatNet: A genome-scale functional network for hexaploid bread wheat, Triticum aestivum. Molecular Plant. PMID 28450181 DOI: 10.1016/j.molp.2017.04.006  0.52
2017 Shim JE, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom UM, Marcotte EM, Lee I. GWAB: a web server for the network-based boosting of human genome-wide association data. Nucleic Acids Research. PMID 28449091 DOI: 10.1093/nar/gkx284  0.52
2017 Caglar MU, Houser JR, Barnhart CS, Boutz DR, Carroll SM, Dasgupta A, Lenoir WF, Smith BL, Sridhara V, Sydykova DK, Vander Wood D, Marx CJ, Marcotte EM, Barrick JE, Wilke CO. The E. coli molecular phenotype under different growth conditions. Scientific Reports. 7: 45303. PMID 28417974 DOI: 10.1038/srep45303  0.88
2017 Brown CW, Sridhara V, Boutz DR, Person MD, Marcotte EM, Barrick JE, Wilke CO. Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions. Bmc Genomics. 18: 301. PMID 28412930 DOI: 10.1186/s12864-017-3676-8  0.88
2017 Hilterbrand AT, Boutz DR, Marcotte EM, Upton JW. Murine Cytomegalovirus Deubiquitinase Regulates Viral Chemokine Levels To Control Inflammation and Pathogenesis. Mbio. 8. PMID 28096485 DOI: 10.1128/mBio.01864-16  0.88
2016 Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee CH, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, ... ... Marcotte EM, et al. Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination. Nature Medicine. PMID 27820605 DOI: 10.1038/nm.4224  0.92
2016 Liebeskind BJ, McWhite CD, Marcotte EM. Towards Consensus Gene Ages. Genome Biology and Evolution. PMID 27259914 DOI: 10.1093/gbe/evw113  0.32
2016 Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun D, Pierquin G, Biver A, Wagner K, ... ... Marcotte EM, et al. The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery. Nature Genetics. PMID 27158779 DOI: 10.1038/ng.3558  1
2016 Teperek M, Simeone A, Gaggioli V, Miyamoto K, Allen G, Erkek S, Peters A, Kwon T, Marcotte E, Zegerman P, Bradshaw C, Gurdon J, Jullien J. Sperm is epigenetically programmed to regulate gene transcription in embryos. Genome Research. PMID 27034506 DOI: 10.1101/gr.201541.115  1
2016 Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, ... ... Marcotte EM, et al. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Data in Brief. 6: 715-21. PMID 26870755 DOI: 10.1016/j.dib.2015.11.062  1
2016 Young JH, Peyton M, Kim HS, McMillan E, Minna JD, White MA, Marcotte EM. Computational Discovery of Pathway-Level Genetic Vulnerabilities in Non-Small-Cell Lung Cancer. Bioinformatics (Oxford, England). PMID 26755624 DOI: 10.1093/bioinformatics/btw010  1
2015 Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, Hunicke-Smith S, Simpson ZB, Caven T, Sochat V, Shine JM, ... ... Marcotte EM, et al. Long-term neural and physiological phenotyping of a single human. Nature Communications. 6: 8885. PMID 26648521 DOI: 10.1038/ncomms9885  0.44
2015 Hwang S, Kim E, Lee I, Marcotte EM. Systematic comparison of variant calling pipelines using gold standard personal exome variants. Scientific Reports. 5: 17875. PMID 26639839 DOI: 10.1038/srep17875  1
2015 Kim E, Hwang S, Kim H, Shim H, Kang B, Yang S, Shim JH, Shin SY, Marcotte EM, Lee I. MouseNet v2: a database of gene networks for studying the laboratory mouse and eight other model vertebrates. Nucleic Acids Research. PMID 26527726 DOI: 10.1093/nar/gkv1155  0.52
2015 Laurent JM, Young JH, Kachroo AH, Marcotte EM. Efforts to make and apply humanized yeast. Briefings in Functional Genomics. PMID 26462863 DOI: 10.1093/bfgp/elv041  1
2015 Wan C, Borgeson B, Phanse S, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, ... ... Marcotte EM, et al. Panorama of ancient metazoan macromolecular complexes. Nature. 525: 339-44. PMID 26344197 DOI: 10.1038/nature14877  1
2015 McWhite CD, Liebeskind BJ, Marcotte EM. Applications of comparative evolution to human disease genetics. Current Opinion in Genetics & Development. 35: 16-24. PMID 26338499 DOI: 10.1016/j.gde.2015.08.004  0.32
2015 Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO. Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation. Plos Computational Biology. 11: e1004400. PMID 26275208 DOI: 10.1371/journal.pcbi.1004400  0.88
2015 Kachroo AH, Laurent JM, Yellman CM, Meyer AG, Wilke CO, Marcotte EM. Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity. Science (New York, N.Y.). 348: 921-5. PMID 25999509 DOI: 10.1126/science.aaa0769  1
2015 Lee I, Kim E, Marcotte EM. Modes of interaction between individuals dominate the topologies of real world networks. Plos One. 10: e0121248. PMID 25793969 DOI: 10.1371/journal.pone.0121248  1
2015 Swaminathan J, Boulgakov AA, Marcotte EM. A theoretical justification for single molecule peptide sequencing. Plos Computational Biology. 11: e1004080. PMID 25714988 DOI: 10.1371/journal.pcbi.1004080  1
2015 Sardana R, Liu X, Granneman S, Zhu J, Gill M, Papoulas O, Marcotte EM, Tollervey D, Correll CC, Johnson AW. The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot. Plos Biology. 13: e1002083. PMID 25710520 DOI: 10.1371/journal.pbio.1002083  1
2015 Brown KA, Yang X, Schipper D, Hall JW, DePue LJ, Gnanam AJ, Arambula JF, Jones JN, Swaminathan J, Dieye Y, Vadivelu J, Chandler DJ, Marcotte EM, Sessler JL, Ehrlich LI, et al. A self-assembling lanthanide molecular nanoparticle for optical imaging. Dalton Transactions (Cambridge, England : 2003). 44: 2667-75. PMID 25512085 DOI: 10.1039/c4dt02646b  0.44
2015 Houser JR, Barnhart C, Boutz DR, Carroll SM, Dasgupta A, Michener JK, Needham BD, Papoulas O, Sridhara V, Sydykova DK, Marx CJ, Trent MS, Barrick JE, Marcotte EM, Wilke CO. Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004400  1
2015 McWhite CD, Liebeskind BJ, Marcotte EM. Applications of comparative evolution to human disease genetics Current Opinion in Genetics and Development. 35: 16-24. DOI: 10.1016/j.gde.2015.08.004  1
2014 Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P. Statistical Approach to Protein Quantification. Molecular & Cellular Proteomics : McP. 13: 666-677. PMID 33498146 DOI: 10.1074/mcp.M112.025445  0.4
2014 Kwon T, Chung MI, Gupta R, Baker JC, Wallingford JB, Marcotte EM. Identifying direct targets of transcription factor Rfx2 that coordinate ciliogenesis and cell movement. Genomics Data. 2: 192-194. PMID 25419512 DOI: 10.1016/j.gdata.2014.06.015  1
2014 Jones RA, Gnanam AJ, Arambula JF, Jones JN, Swaminathan J, Yang X, Schipper D, Hall JW, DePue LJ, Dieye Y, Vadivelu J, Chandler DJ, Marcotte EM, Sessler JL, Ehrlich LI, et al. Lanthanide nano-drums: a new class of molecular nanoparticles for potential biomedical applications. Faraday Discussions. 175: 241-55. PMID 25284181 DOI: 10.1039/c4fd00117f  1
2014 Hwang S, Kim E, Yang S, Marcotte EM, Lee I. MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network. Nucleic Acids Research. 42: W147-53. PMID 24861622 DOI: 10.1093/nar/gku434  1
2014 Kwon T, Huse HK, Vogel C, Whiteley M, Marcotte EM. Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains. Journal of Proteome Research. 13: 2370-80. PMID 24742327 DOI: 10.1021/pr4011684  1
2014 Boutz DR, Horton AP, Wine Y, Lavinder JJ, Georgiou G, Marcotte EM. Proteomic identification of monoclonal antibodies from serum. Analytical Chemistry. 86: 4758-66. PMID 24684310 DOI: 10.1021/ac4037679  1
2014 O'Connell JD, Tsechansky M, Royall A, Boutz DR, Ellington AD, Marcotte EM. A proteomic survey of widespread protein aggregation in yeast. Molecular Biosystems. 10: 851-61. PMID 24488121 DOI: 10.1039/c3mb70508k  1
2014 Hammerling MJ, Ellefson JW, Boutz DR, Marcotte EM, Ellington AD, Barrick JE. Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness. Nature Chemical Biology. 10: 178-80. PMID 24487692 DOI: 10.1038/nchembio.1450  1
2014 Lavinder JJ, Wine Y, Giesecke C, Ippolito GC, Horton AP, Lungu OI, Hoi KH, DeKosky BJ, Murrin EM, Wirth MM, Ellington AD, Dörner T, Marcotte EM, Boutz DR, Georgiou G. Identification and characterization of the constituent human serum antibodies elicited by vaccination. Proceedings of the National Academy of Sciences of the United States of America. 111: 2259-64. PMID 24469811 DOI: 10.1073/pnas.1317793111  1
2014 Chung MI, Kwon T, Tu F, Brooks ER, Gupta R, Meyer M, Baker JC, Marcotte EM, Wallingford JB. Coordinated genomic control of ciliogenesis and cell movement by RFX2. Elife. 3: e01439. PMID 24424412 DOI: 10.7554/eLife.01439  1
2014 Zhao A, Tsechansky M, Ellington AD, Marcotte EM. Revisiting and revising the purinosome. Molecular Biosystems. 10: 369-74. PMID 24413256 DOI: 10.1039/c3mb70397e  1
2014 Qian Y, Kachroo AH, Yellman CM, Marcotte EM, Johnson KA. Yeast cells expressing the human mitochondrial DNA polymerase reveal correlations between polymerase fidelity and human disease progression. The Journal of Biological Chemistry. 289: 5970-85. PMID 24398692 DOI: 10.1074/jbc.M113.526418  1
2014 Gerster S, Kwon T, Ludwig C, Matondo M, Vogel C, Marcotte EM, Aebersold R, Bühlmann P. Statistical approach to protein quantification. Molecular & Cellular Proteomics : McP. 13: 666-77. PMID 24255132 DOI: 10.1074/mcp.M112.025445  1
2013 Huse HK, Kwon T, Zlosnik JE, Speert DP, Marcotte EM, Whiteley M. Pseudomonas aeruginosa enhances production of a non-alginate exopolysaccharide during long-term colonization of the cystic fibrosis lung. Plos One. 8: e82621. PMID 24324811 DOI: 10.1371/journal.pone.0082621  1
2013 Li Z, Park Y, Marcotte EM. A Bacteriophage tailspike domain promotes self-cleavage of a human membrane-bound transcription factor, the myelin regulatory factor MYRF. Plos Biology. 11: e1001624. PMID 23966832 DOI: 10.1371/journal.pbio.1001624  1
2013 Woods JO, Singh-Blom UM, Laurent JM, McGary KL, Marcotte EM. Prediction of gene-phenotype associations in humans, mice, and plants using phenologs. Bmc Bioinformatics. 14: 203. PMID 23800157 DOI: 10.1186/1471-2105-14-203  1
2013 Marcotte E, Boone C, Babu MM, Gavin AC. Network Biology editorial 2013. Molecular Biosystems. 9: 1557-8. PMID 23712464 DOI: 10.1039/c3mb90018e  1
2013 Singh-Blom UM, Natarajan N, Tewari A, Woods JO, Dhillon IS, Marcotte EM. Prediction and validation of gene-disease associations using methods inspired by social network analyses. Plos One. 8: e58977. PMID 23650495 DOI: 10.1371/journal.pone.0058977  1
2013 Zhao A, Tsechansky M, Swaminathan J, Cook L, Ellington AD, Marcotte EM. Transiently transfected purine biosynthetic enzymes form stress bodies. Plos One. 8: e56203. PMID 23405267 DOI: 10.1371/journal.pone.0056203  1
2013 Zhou L, Zhang AB, Wang R, Marcotte EM, Vogel C. The proteomic response to mutants of the Escherichia coli RNA degradosome. Molecular Biosystems. 9: 750-7. PMID 23403814 DOI: 10.1039/c3mb25513a  1
2013 Wine Y, Boutz DR, Lavinder JJ, Miklos AE, Hughes RA, Hoi KH, Jung ST, Horton AP, Murrin EM, Ellington AD, Marcotte EM, Georgiou G. Molecular deconvolution of the monoclonal antibodies that comprise the polyclonal serum response. Proceedings of the National Academy of Sciences of the United States of America. 110: 2993-8. PMID 23382245 DOI: 10.1073/pnas.1213737110  1
2013 Wessel AK, Liew J, Kwon T, Marcotte EM, Whiteley M. Role of Pseudomonas aeruginosa peptidoglycan-associated outer membrane proteins in vesicle formation. Journal of Bacteriology. 195: 213-9. PMID 23123904 DOI: 10.1128/JB.01253-12  1
2013 Wan C, Liu J, Fong V, Lugowski A, Stoilova S, Bethune-Waddell D, Borgeson B, Havugimana PC, Marcotte EM, Emili A. ComplexQuant: high-throughput computational pipeline for the global quantitative analysis of endogenous soluble protein complexes using high resolution protein HPLC and precision label-free LC/MS/MS. Journal of Proteomics. 81: 102-11. PMID 23063720 DOI: 10.1016/j.jprot.2012.10.001  1
2012 Wang PI, Hwang S, Kincaid RP, Sullivan CS, Lee I, Marcotte EM. RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network. Genome Biology. 13: R125. PMID 23268829 DOI: 10.1186/gb-2012-13-12-r125  1
2012 Park Y, Marcotte EM. Flaws in evaluation schemes for pair-input computational predictions. Nature Methods. 9: 1134-6. PMID 23223166 DOI: 10.1038/nmeth.2259  1
2012 O'Connell JD, Zhao A, Ellington AD, Marcotte EM. Dynamic reorganization of metabolic enzymes into intracellular bodies. Annual Review of Cell and Developmental Biology. 28: 89-111. PMID 23057741 DOI: 10.1146/annurev-cellbio-101011-155841  1
2012 Uribe RA, Kwon T, Marcotte EM, Gross JM. Id2a functions to limit Notch pathway activity and thereby influence the transition from proliferation to differentiation of retinoblasts during zebrafish retinogenesis. Developmental Biology. 371: 280-92. PMID 22981606 DOI: 10.1016/j.ydbio.2012.08.032  1
2012 Havugimana PC, Hart GT, Nepusz T, Yang H, Turinsky AL, Li Z, Wang PI, Boutz DR, Fong V, Phanse S, Babu M, Craig SA, Hu P, Wan C, Vlasblom J, ... ... Marcotte EM, et al. A census of human soluble protein complexes. Cell. 150: 1068-81. PMID 22939629 DOI: 10.1016/j.cell.2012.08.011  1
2012 Cha HJ, Byrom M, Mead PE, Ellington AD, Wallingford JB, Marcotte EM. Evolutionarily repurposed networks reveal the well-known antifungal drug thiabendazole to be a novel vascular disrupting agent. Plos Biology. 10: e1001379. PMID 22927795 DOI: 10.1371/journal.pbio.1001379  1
2012 Vogel C, Marcotte EM. Label-free protein quantitation using weighted spectral counting. Methods in Molecular Biology (Clifton, N.J.). 893: 321-41. PMID 22665309 DOI: 10.1007/978-1-61779-885-6_20  1
2012 Orr SJ, Boutz DR, Wang R, Chronis C, Lea NC, Thayaparan T, Hamilton E, Milewicz H, Blanc E, Mufti GJ, Marcotte EM, Thomas NS. Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry. Molecular Systems Biology. 8: 573. PMID 22415777 DOI: 10.1038/msb.2012.5  1
2012 Vogel C, Marcotte EM. Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nature Reviews. Genetics. 13: 227-32. PMID 22411467 DOI: 10.1038/nrg3185  1
2012 Chung MI, Peyrot SM, LeBoeuf S, Park TJ, McGary KL, Marcotte EM, Wallingford JB. RFX2 is broadly required for ciliogenesis during vertebrate development. Developmental Biology. 363: 155-65. PMID 22227339 DOI: 10.1016/j.ydbio.2011.12.029  1
2011 Lee I, Seo YS, Coltrane D, Hwang S, Oh T, Marcotte EM, Ronald PC. Genetic dissection of the biotic stress response using a genome-scale gene network for rice. Proceedings of the National Academy of Sciences of the United States of America. 108: 18548-53. PMID 22042862 DOI: 10.1073/pnas.1110384108  1
2011 Vogel C, Silva GM, Marcotte EM. Protein expression regulation under oxidative stress. Molecular & Cellular Proteomics : McP. 10: M111.009217. PMID 21933953 DOI: 10.1074/mcp.M111.009217  1
2011 Park Y, Marcotte EM. Revisiting the negative example sampling problem for predicting protein-protein interactions. Bioinformatics (Oxford, England). 27: 3024-8. PMID 21908540 DOI: 10.1093/bioinformatics/btr514  1
2011 Hwang S, Rhee SY, Marcotte EM, Lee I. Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network. Nature Protocols. 6: 1429-42. PMID 21886106 DOI: 10.1038/nprot.2011.372  1
2011 Lee I, Blom UM, Wang PI, Shim JE, Marcotte EM. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Research. 21: 1109-21. PMID 21536720 DOI: 10.1101/gr.118992.110  1
2011 Kwon T, Choi H, Vogel C, Nesvizhskii AI, Marcotte EM. MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines. Journal of Proteome Research. 10: 2949-58. PMID 21488652 DOI: 10.1021/pr2002116  1
2011 Boutz DR, Collins PJ, Suresh U, Lu M, Ramírez CM, Fernández-Hernando C, Huang Y, Abreu Rde S, Le SY, Shapiro BA, Liu AM, Luk JM, Aldred SF, Trinklein ND, Marcotte EM, et al. Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122. The Journal of Biological Chemistry. 286: 18066-78. PMID 21402708 DOI: 10.1074/jbc.M110.196451  1
2011 Smith KR, Kieserman EK, Wang PI, Basten SG, Giles RH, Marcotte EM, Wallingford JB. A role for central spindle proteins in cilia structure and function. Cytoskeleton (Hoboken, N.J.). 68: 112-24. PMID 21246755 DOI: 10.1002/cm.20498  1
2011 Niu W, Hart GT, Marcotte EM. High-throughput immunofluorescence microscopy using yeast spheroplast cell-based microarrays. Methods in Molecular Biology (Clifton, N.J.). 706: 83-95. PMID 21104056 DOI: 10.1007/978-1-61737-970-3_7  1
2010 Laurent JM, Vogel C, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM. Protein abundances are more conserved than mRNA abundances across diverse taxa. Proteomics. 10: 4209-12. PMID 21089048 DOI: 10.1002/pmic.201000327  1
2010 Huang N, Lee I, Marcotte EM, Hurles ME. Characterising and predicting haploinsufficiency in the human genome. Plos Genetics. 6: e1001154. PMID 20976243 DOI: 10.1371/journal.pgen.1001154  1
2010 Huse HK, Kwon T, Zlosnik JE, Speert DP, Marcotte EM, Whiteley M. Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo. Mbio. 1. PMID 20856824 DOI: 10.1128/mBio.00199-10  1
2010 Vogel C, Abreu Rde S, Ko D, Le SY, Shapiro BA, Burns SC, Sandhu D, Boutz DR, Marcotte EM, Penalva LO. Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line. Molecular Systems Biology. 6: 400. PMID 20739923 DOI: 10.1038/msb.2010.59  1
2010 Lo KY, Li Z, Bussiere C, Bresson S, Marcotte EM, Johnson AW. Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit. Molecular Cell. 39: 196-208. PMID 20670889 DOI: 10.1016/j.molcel.2010.06.018  1
2010 Wang PI, Marcotte EM. It's the machine that matters: Predicting gene function and phenotype from protein networks. Journal of Proteomics. 73: 2277-89. PMID 20637909 DOI: 10.1016/j.jprot.2010.07.005  1
2010 Lee I, Lehner B, Vavouri T, Shin J, Fraser AG, Marcotte EM. Predicting genetic modifier loci using functional gene networks. Genome Research. 20: 1143-53. PMID 20538624 DOI: 10.1101/gr.102749.109  1
2010 Orr SJ, Gaymes T, Ladon D, Chronis C, Czepulkowski B, Wang R, Mufti GJ, Marcotte EM, Thomas NS. Reducing MCM levels in human primary T cells during the G(0)-->G(1) transition causes genomic instability during the first cell cycle. Oncogene. 29: 3803-14. PMID 20440261 DOI: 10.1038/onc.2010.138  1
2010 McGary KL, Park TJ, Woods JO, Cha HJ, Wallingford JB, Marcotte EM. Systematic discovery of nonobvious human disease models through orthologous phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 107: 6544-9. PMID 20308572 DOI: 10.1073/pnas.0910200107  1
2010 Lee I, Ambaru B, Thakkar P, Marcotte EM, Rhee SY. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nature Biotechnology. 28: 149-56. PMID 20118918 DOI: 10.1038/nbt.1603  1
2009 de Sousa Abreu R, Penalva LO, Marcotte EM, Vogel C. Global signatures of protein and mRNA expression levels. Molecular Biosystems. 5: 1512-26. PMID 20023718 DOI: 10.1039/b908315d  1
2009 Hart T, Zhao A, Garg A, Bolusani S, Marcotte EM. Human cell chips: adapting DNA microarray spotting technology to cell-based imaging assays. Plos One. 4: e7088. PMID 19862318 DOI: 10.1371/journal.pone.0007088  1
2009 Li Z, Lee I, Moradi E, Hung NJ, Johnson AW, Marcotte EM. Rational extension of the ribosome biogenesis pathway using network-guided genetics. Plos Biology. 7: e1000213. PMID 19806183 DOI: 10.1371/journal.pbio.1000213  1
2009 Lo KY, Li Z, Wang F, Marcotte EM, Johnson AW. Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0. The Journal of Cell Biology. 186: 849-62. PMID 19797078 DOI: 10.1083/jcb.200904110  1
2009 Gray RS, Abitua PB, Wlodarczyk BJ, Szabo-Rogers HL, Blanchard O, Lee I, Weiss GS, Liu KJ, Marcotte EM, Wallingford JB, Finnell RH. The planar cell polarity effector Fuz is essential for targeted membrane trafficking, ciliogenesis and mouse embryonic development. Nature Cell Biology. 11: 1225-32. PMID 19767740 DOI: 10.1038/ncb1966  1
2009 Vogel C, Marcotte EM. Absolute abundance for the masses. Nature Biotechnology. 27: 825-6. PMID 19741640 DOI: 10.1038/nbt0909-825  1
2009 Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP. Mining gene functional networks to improve mass-spectrometry-based protein identification. Bioinformatics (Oxford, England). 25: 2955-61. PMID 19633097 DOI: 10.1093/bioinformatics/btp461  1
2009 Marcotte EM, Tsechansky M. Disorder, promiscuity, and toxic partnerships. Cell. 138: 16-8. PMID 19596229 DOI: 10.1016/j.cell.2009.06.024  1
2009 Tabor JJ, Salis HM, Simpson ZB, Chevalier AA, Levskaya A, Marcotte EM, Voigt CA, Ellington AD. A synthetic genetic edge detection program. Cell. 137: 1272-81. PMID 19563759 DOI: 10.1016/j.cell.2009.04.048  1
2009 Narayanaswamy R, Levy M, Tsechansky M, Stovall GM, O'Connell JD, Mirrielees J, Ellington AD, Marcotte EM. Widespread reorganization of metabolic enzymes into reversible assemblies upon nutrient starvation. Proceedings of the National Academy of Sciences of the United States of America. 106: 10147-52. PMID 19502427 DOI: 10.1073/pnas.0812771106  1
2009 Lee I, Marcotte EM. Effects of functional bias on supervised learning of a gene network model. Methods in Molecular Biology (Clifton, N.J.). 541: 463-75. PMID 19381535 DOI: 10.1007/978-1-59745-243-4_20  1
2009 Ramakrishnan SR, Vogel C, Prince JT, Li Z, Penalva LO, Myers M, Marcotte EM, Miranker DP, Wang R. Integrating shotgun proteomics and mRNA expression data to improve protein identification. Bioinformatics (Oxford, England). 25: 1397-403. PMID 19318424 DOI: 10.1093/bioinformatics/btp168  1
2009 Narayanaswamy R, Moradi EK, Niu W, Hart GT, Davis M, McGary KL, Ellington AD, Marcotte EM. Systematic definition of protein constituents along the major polarization axis reveals an adaptive reuse of the polarization machinery in pheromone-treated budding yeast. Journal of Proteome Research. 8: 6-19. PMID 19053807 DOI: 10.1021/pr800524g  1
2008 Hannay K, Marcotte EM, Vogel C. Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation. Bmc Genomics. 9: 609. PMID 19087332 DOI: 10.1186/1471-2164-9-609  1
2008 Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results. Bmc Bioinformatics. 9: 529. PMID 19068132 DOI: 10.1186/1471-2105-9-529  1
2008 Kim WK, Marcotte EM. Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence. Plos Computational Biology. 4: e1000232. PMID 19043579 DOI: 10.1371/journal.pcbi.1000232  1
2008 Prince JT, Marcotte EM. mspire: mass spectrometry proteomics in Ruby. Bioinformatics (Oxford, England). 24: 2796-7. PMID 18930952 DOI: 10.1093/bioinformatics/btn513  1
2008 Vogel C, Marcotte EM. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data. Nature Protocols. 3: 1444-51. PMID 18772871 DOI: 10.1038/nport.2008.132  1
2008 Lee I, Marcotte EM. Integrating functional genomics data. Methods in Molecular Biology (Clifton, N.J.). 453: 267-78. PMID 18712309 DOI: 10.1007/978-1-60327-429-6_14  1
2008 Niu W, Li Z, Zhan W, Iyer VR, Marcotte EM. Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae. Plos Genetics. 4: e1000120. PMID 18617996 DOI: 10.1371/journal.pgen.1000120  1
2008 Kim WK, Krumpelman C, Marcotte EM. Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy. Genome Biology. 9: S5. PMID 18613949 DOI: 10.1186/gb-2008-9-s1-s5  1
2008 Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, ... ... Marcotte EM, et al. A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biology. 9: S2. PMID 18613946 DOI: 10.1186/gb-2008-9-s1-s2  1
2008 Zhao J, Niu W, Yao J, Mohr S, Marcotte EM, Lambowitz AM. Group II intron protein localization and insertion sites are affected by polyphosphate. Plos Biology. 6: e150. PMID 18593213 DOI: 10.1371/journal.pbio.0060150  1
2008 Ramani AK, Li Z, Hart GT, Carlson MW, Boutz DR, Marcotte EM. A map of human protein interactions derived from co-expression of human mRNAs and their orthologs. Molecular Systems Biology. 4: 180. PMID 18414481 DOI: 10.1038/msb.2008.19  1
2008 White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW. Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. Molecular and Cellular Biology. 28: 3151-61. PMID 18332120 DOI: 10.1128/MCB.01674-07  1
2008 Wang R, Marcotte EM. The proteomic response of Mycobacterium smegmatis to anti-tuberculosis drugs suggests targeted pathways. Journal of Proteome Research. 7: 855-65. PMID 18275136 DOI: 10.1021/pr0703066  1
2008 Lee I, Lehner B, Crombie C, Wong W, Fraser AG, Marcotte EM. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nature Genetics. 40: 181-8. PMID 18223650 DOI: 10.1038/ng.2007.70  1
2007 McGary KL, Lee I, Marcotte EM. Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes. Genome Biology. 8: R258. PMID 18053250 DOI: 10.1186/gb-2007-8-12-r258  1
2007 Lee I, Li Z, Marcotte EM. An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. Plos One. 2: e988. PMID 17912365 DOI: 10.1371/journal.pone.0000988  1
2007 Marcotte EM. How do shotgun proteomics algorithms identify proteins? Nature Biotechnology. 25: 755-7. PMID 17621303 DOI: 10.1038/nbt0707-755  1
2007 Hart GT, Lee I, Marcotte ER. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. Bmc Bioinformatics. 8: 236. PMID 17605818 DOI: 10.1186/1471-2105-8-236  1
2007 Carlson MW, Iyer VR, Marcotte EM. Quantitative gene expression assessment identifies appropriate cell line models for individual cervical cancer pathways. Bmc Genomics. 8: 117. PMID 17493265 DOI: 10.1186/1471-2164-8-117  1
2007 Lu P, Vogel C, Wang R, Yao X, Marcotte EM. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nature Biotechnology. 25: 117-24. PMID 17187058 DOI: 10.1038/nbt1270  1
2007 Lu P, Rangan A, Chan SY, Appling DR, Hoffman DW, Marcotte EM. Global metabolic changes following loss of a feedback loop reveal dynamic steady states of the yeast metabolome. Metabolic Engineering. 9: 8-20. PMID 17049899 DOI: 10.1016/j.ymben.2006.06.003  1
2007 Lee I, Narayanaswamy R, Marcotte EM. 24 Bioinformatic Prediction of Yeast Gene Function Methods in Microbiology. 36: 597-628. DOI: 10.1016/S0580-9517(06)36024-2  1
2006 Hart GT, Ramani AK, Marcotte EM. How complete are current yeast and human protein-interaction networks? Genome Biology. 7: 120. PMID 17147767 DOI: 10.1186/gb-2006-7-11-120  1
2006 Prince JT, Marcotte EM. Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping. Analytical Chemistry. 78: 6140-52. PMID 16944896 DOI: 10.1021/ac0605344  1
2006 Ramakrishnan SR, Mao R, Nakorchevskiy AA, Prince JT, Willard WS, Xu W, Marcotte EM, Miranker DP. A fast coarse filtering method for peptide identification by mass spectrometry. Bioinformatics (Oxford, England). 22: 1524-31. PMID 16585069 DOI: 10.1093/bioinformatics/btl118  1
2006 Eisenberg D, Marcotte E, McLachlan AD, Pellegrini M. Bioinformatic challenges for the next decade(s). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 525-7. PMID 16524841 DOI: 10.1098/rstb.2005.1797  1
2006 Narayanaswamy R, Niu W, Scouras AD, Hart GT, Davies J, Ellington AD, Iyer VR, Marcotte EM. Systematic profiling of cellular phenotypes with spotted cell microarrays reveals mating-pheromone response genes. Genome Biology. 7: R6. PMID 16507139 DOI: 10.1186/gb-2006-7-1-r6  1
2005 Levskaya A, Chevalier AA, Tabor JJ, Simpson ZB, Lavery LA, Levy M, Davidson EA, Scouras A, Ellington AD, Marcotte EM, Voigt CA. Synthetic biology: engineering Escherichia coli to see light. Nature. 438: 441-2. PMID 16306980 DOI: 10.1038/nature04405  1
2005 Wang R, Prince JT, Marcotte EM. Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. Genome Research. 15: 1118-26. PMID 16077011 DOI: 10.1101/gr.3994105  1
2005 Ramani AK, Bunescu RC, Mooney RJ, Marcotte EM. Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome. Genome Biology. 6: R40. PMID 15892868 DOI: 10.1186/gb-2005-6-5-r40  1
2005 Bunescu R, Ge R, Kate RJ, Marcotte EM, Mooney RJ, Ramani AK, Wong YW. Comparative experiments on learning information extractors for proteins and their interactions. Artificial Intelligence in Medicine. 33: 139-55. PMID 15811782 DOI: 10.1016/j.artmed.2004.07.016  1
2005 Date SV, Marcotte EM. Protein function prediction using the Protein Link EXplorer (PLEX). Bioinformatics (Oxford, England). 21: 2558-9. PMID 15701682 DOI: 10.1093/bioinformatics/bti313  1
2004 Lee I, Date SV, Adai AT, Marcotte EM. A probabilistic functional network of yeast genes. Science (New York, N.Y.). 306: 1555-8. PMID 15567862 DOI: 10.1126/science.1099511  1
2004 Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Research. 14: 2221-34. PMID 15520287 DOI: 10.1101/gr.2700304  1
2004 Fraser AG, Marcotte EM. Development through the eyes of functional genomics. Current Opinion in Genetics & Development. 14: 336-42. PMID 15261648 DOI: 10.1016/j.gde.2004.06.015  1
2004 Bork P, Jensen LJ, von Mering C, Ramani AK, Lee I, Marcotte EM. Protein interaction networks from yeast to human. Current Opinion in Structural Biology. 14: 292-9. PMID 15193308 DOI: 10.1016/j.sbi.2004.05.003  1
2004 Adai AT, Date SV, Wieland S, Marcotte EM. LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. Journal of Molecular Biology. 340: 179-90. PMID 15184029 DOI: 10.1016/j.jmb.2004.04.047  1
2004 Fraser AG, Marcotte EM. A probabilistic view of gene function. Nature Genetics. 36: 559-64. PMID 15167932 DOI: 10.1038/ng1370  1
2004 Prince JT, Carlson MW, Wang R, Lu P, Marcotte EM. The need for a public proteomics repository. Nature Biotechnology. 22: 471-2. PMID 15085804 DOI: 10.1038/nbt0404-471  1
2004 McDermott J, Samudrala R, Date SV, Marcotte EM. Enhanced functional information from predicted protein networks Trends in Biotechnology. 22: 60-63. PMID 14757037 DOI: 10.1016/j.tibtech.2003.11.010  1
2004 Marcotte EM. Practical computational approaches to inferring protein function Drug Discovery Today: Biosilico. 2: 24-29. DOI: 10.1016/S1741-8364(04)02386-8  1
2003 Dhillon IS, Marcotte EM, Roshan U. Diametrical clustering for identifying anti-correlated gene clusters. Bioinformatics (Oxford, England). 19: 1612-9. PMID 12967956 DOI: 10.1093/bioinformatics/btg209  1
2003 Lu P, Nakorchevskiy A, Marcotte EM. Expression deconvolution: a reinterpretation of DNA microarray data reveals dynamic changes in cell populations. Proceedings of the National Academy of Sciences of the United States of America. 100: 10370-5. PMID 12934019 DOI: 10.1073/pnas.1832361100  1
2003 Date SV, Marcotte EM. Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages. Nature Biotechnology. 21: 1055-62. PMID 12923548 DOI: 10.1038/nbt861  1
2003 Marcotte EM. Assembling a jigsaw puzzle with 20,000 parts. Genome Biology. 4: 323. PMID 12801408 DOI: 10.1186/gb-2003-4-6-323  1
2003 Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Marcotte E, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/nature01554  1
2003 Ramani AK, Marcotte EM. Exploiting the co-evolution of interacting proteins to discover interaction specificity. Journal of Molecular Biology. 327: 273-84. PMID 12614624 DOI: 10.1016/S0022-2836(03)00114-1  1
2002 Marcotte CJ, Marcotte EM. Predicting functional linkages from gene fusions with confidence. Applied Bioinformatics. 1: 93-100. PMID 15130848  1
2001 Marcotte EM. The path not taken. Nature Biotechnology. 19: 626-7. PMID 11433271 DOI: 10.1038/90222  1
2001 Marcotte EM, Xenarios I, Eisenberg D. Mining literature for protein-protein interactions. Bioinformatics (Oxford, England). 17: 359-63. PMID 11301305  1
2001 Marcotte EM. Measuring the dynamics of the proteome. Genome Research. 11: 191-3. PMID 11157781 DOI: 10.1101/gr.178301  1
2001 Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D. DIP: The Database of Interacting Proteins: 2001 update. Nucleic Acids Research. 29: 239-41. PMID 11125102  1
2000 Marcotte EM, Xenarios I, van Der Bliek AM, Eisenberg D. Localizing proteins in the cell from their phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 97: 12115-20. PMID 11035803 DOI: 10.1073/pnas.220399497  1
2000 Eisenberg D, Marcotte EM, Xenarios I, Yeates TO. Protein function in the post-genomic era. Nature. 405: 823-6. PMID 10866208 DOI: 10.1038/35015694  1
2000 Marcotte EM. Computational genetics: finding protein function by nonhomology methods. Current Opinion in Structural Biology. 10: 359-65. PMID 10851184 DOI: 10.1016/S0959-440X(00)00097-X  1
2000 Yang H, Fitz-Gibbon S, Marcotte EM, Tai JH, Hyman EC, Miller JH. Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum. Journal of Bacteriology. 182: 1272-9. PMID 10671447 DOI: 10.1128/JB.182.5.1272-1279.2000  1
2000 Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D. DIP: the database of interacting proteins. Nucleic Acids Research. 28: 289-91. PMID 10592249  1
1999 Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature. 402: 83-6. PMID 10573421 DOI: 10.1038/47048  1
1999 Marcotte EM, Pellegrini M, Yeates TO, Eisenberg D. A census of protein repeats. Journal of Molecular Biology. 293: 151-60. PMID 10512723 DOI: 10.1006/jmbi.1999.3136  1
1999 Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science (New York, N.Y.). 285: 751-3. PMID 10427000 DOI: 10.1126/science.285.5428.751  1
1999 Pellegrini M, Marcotte EM, Yeates TO. A fast algorithm for genome-wide analysis of proteins with repeated sequences. Proteins. 35: 440-6. PMID 10382671 DOI: 10.1002/(SICI)1097-0134(19990601)35:4<440::AID-PROT7>3.0.CO;2-Y  1
1999 Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America. 96: 4285-8. PMID 10200254 DOI: 10.1073/pnas.96.8.4285  1
1999 Marcotte EM, Eisenberg D. Chicken prion tandem repeats form a stable, protease-resistant domain. Biochemistry. 38: 667-76. PMID 9888807 DOI: 10.1021/bi981487f  1
1998 Robertus JD, Monzingo AF, Marcotte EM, Hart PJ. Structural analysis shows five glycohydrolase families diverged from a common ancestor. The Journal of Experimental Zoology. 282: 127-32. PMID 9723170 DOI: 10.1002/(SICI)1097-010X(199809/10)282:1/2<127::AID-JEZ14>3.0.CO;2-R  1
1997 Hollis T, Honda Y, Fukamizo T, Marcotte E, Day PJ, Robertus JD. Kinetic analysis of barley chitinase. Archives of Biochemistry and Biophysics. 344: 335-42. PMID 9264547 DOI: 10.1006/abbi.1997.0225  1
1996 Marcotte EM, Monzingo AF, Ernst SR, Brzezinski R, Robertus JD. X-ray structure of an anti-fungal chitosanase from streptomyces N174. Nature Structural Biology. 3: 155-62. PMID 8564542 DOI: 10.1038/nsb0296-155  1
1996 Monzingo AF, Marcotte EM, Hart PJ, Robertus JD. Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core. Nature Structural Biology. 3: 133-40. PMID 8564539 DOI: 10.1038/nsb0296-133  1
1994 Kim YJ, Francisco L, Chen GC, Marcotte E, Chan CS. Control of cellular morphogenesis by the Ip12/Bem2 GTPase-activating protein: possible role of protein phosphorylation. The Journal of Cell Biology. 127: 1381-94. PMID 7962097 DOI: 10.1083/jcb.127.5.1381  0.56
1993 Marcotte E, Hart PJ, Boucher I, Brzezinski R, Robertus JD. Crystallization of a chitosanase from Streptomyces N174. Journal of Molecular Biology. 232: 995-6. PMID 8355284 DOI: 10.1006/jmbi.1993.1447  1
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