Kelly Sheppard, Ph.D. - Publications

2010- Chemistry Skidmore College, Saratoga Springs, NY, United States 
tRNA synthetase

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Nair N, Raff H, Islam MT, Feen M, Garofalo DM, Sheppard K. The Bacillus subtilis and Bacillus halodurans aspartyl-tRNA synthetases retain recognition of tRNA(Asn). Journal of Molecular Biology. PMID 26804570 DOI: 10.1016/j.jmb.2016.01.014  0.48
2015 Suzuki T, Nakamura A, Kato K, Söll D, Tanaka I, Sheppard K, Yao M. Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 112: 382-7. PMID 25548166 DOI: 10.1073/pnas.1423314112  0.48
2015 Suhanovsky MM, Sheppard K, Rowlett RS. β-Carbonic Anhydrases: General Features and Medical Implications Carbonic Anhydrases as Biocatalysts: From Theory to Medical and Industrial Applications. 247-273. DOI: 10.1016/B978-0-444-63258-6.00014-7  0.48
2014 Alperstein A, Ulrich B, Garofalo DM, Dreisbach R, Raff H, Sheppard K. The predatory bacterium Bdellovibrio bacteriovorus aspartyl-tRNA synthetase recognizes tRNAAsn as a substrate. Plos One. 9: e110842. PMID 25338061 DOI: 10.1371/journal.pone.0110842  0.48
2014 Mladenova SR, Stein KR, Bartlett L, Sheppard K. Relaxed tRNA specificity of the Staphylococcus aureus aspartyl-tRNA synthetase enables RNA-dependent asparagine biosynthesis. Febs Letters. 588: 1808-12. PMID 24685427 DOI: 10.1016/j.febslet.2014.03.042  0.48
2013 Himes BE, Sheppard K, Berndt A, Leme AS, Myers RA, Gignoux CR, Levin AM, Gauderman WJ, Yang JJ, Mathias RA, Romieu I, Torgerson DG, Roth LA, Huntsman S, Eng C, et al. Integration of mouse and human genome-wide association data identifies KCNIP4 as an asthma gene. Plos One. 8: e56179. PMID 23457522 DOI: 10.1371/journal.pone.0056179  0.36
2011 O'Donoghue P, Sheppard K, Nureki O, Söll D. Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 108: 20485-90. PMID 22158897 DOI: 10.1073/pnas.1117294108  0.48
2011 Englert M, Sheppard K, Aslanian A, Yates JR, Söll D. Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation. Proceedings of the National Academy of Sciences of the United States of America. 108: 1290-5. PMID 21209330 DOI: 10.1073/pnas.1018307108  0.48
2010 Englert M, Sheppard K, Gundllapalli S, Beier H, Söll D. Branchiostoma floridae has separate healing and sealing enzymes for 5'-phosphate RNA ligation. Proceedings of the National Academy of Sciences of the United States of America. 107: 16834-9. PMID 20837552 DOI: 10.1073/pnas.1011703107  0.48
2010 Nureki O, O'Donoghue P, Watanabe N, Ohmori A, Oshikane H, Araiso Y, Sheppard K, Söll D, Ishitani R. Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation. Nucleic Acids Research. 38: 7286-97. PMID 20601684 DOI: 10.1093/nar/gkq605  0.48
2010 Rampias T, Sheppard K, Söll D. The archaeal transamidosome for RNA-dependent glutamine biosynthesis. Nucleic Acids Research. 38: 5774-83. PMID 20457752 DOI: 10.1093/nar/gkq336  0.48
2010 Nakamura A, Sheppard K, Yamane J, Yao M, Söll D, Tanaka I. Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition. Nucleic Acids Research. 38: 672-82. PMID 19906721 DOI: 10.1093/nar/gkp955  0.48
2009 Wu J, Bu W, Sheppard K, Kitabatake M, Kwon ST, Söll D, Smith JL. Insights into tRNA-dependent amidotransferase evolution and catalysis from the structure of the Aquifex aeolicus enzyme. Journal of Molecular Biology. 391: 703-16. PMID 19520089 DOI: 10.1016/j.jmb.2009.06.014  0.48
2008 Yuan J, Sheppard K, Söll D. Amino acid modifications on tRNA. Acta Biochimica Et Biophysica Sinica. 40: 539-53. PMID 18604446 DOI: 10.1111/j.1745-7270.2008.00435.x  0.48
2008 Sheppard K, Sherrer RL, Söll D. Methanothermobacter thermautotrophicus tRNA Gln confines the amidotransferase GatCAB to asparaginyl-tRNA Asn formation. Journal of Molecular Biology. 377: 845-53. PMID 18291416 DOI: 10.1016/j.jmb.2008.01.064  0.48
2008 Sheppard K, Söll D. On the evolution of the tRNA-dependent amidotransferases, GatCAB and GatDE. Journal of Molecular Biology. 377: 831-44. PMID 18279892 DOI: 10.1016/j.jmb.2008.01.016  0.48
2008 Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Söll D. From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucleic Acids Research. 36: 1813-25. PMID 18252769 DOI: 10.1093/nar/gkn015  0.48
2008 Sheppard K, Akochy PM, Söll D. Assays for transfer RNA-dependent amino acid biosynthesis. Methods (San Diego, Calif.). 44: 139-45. PMID 18241795 DOI: 10.1016/j.ymeth.2007.06.010  0.48
2007 Sheppard K, Akochy PM, Salazar JC, Söll D. The Helicobacter pylori amidotransferase GatCAB is equally efficient in glutamine-dependent transamidation of Asp-tRNAAsn and Glu-tRNAGln. The Journal of Biological Chemistry. 282: 11866-73. PMID 17329242 DOI: 10.1074/jbc.M700398200  0.48
2007 Namgoong S, Sheppard K, Sherrer RL, Söll D. Co-evolution of the archaeal tRNA-dependent amidotransferase GatCAB with tRNA(Asn). Febs Letters. 581: 309-14. PMID 17214986 DOI: 10.1016/j.febslet.2006.12.033  0.48
2007 Ambrogelly A, Salazar JC, Sheppard K, Polycarpo C, Oshikane H, Nakamura Y, Fukai S, Nureki O, Söll D. Aminoacyl-tRNAs: Deciphering and Defining the Genetic Message Archaea: Evolution, Physiology, and Molecular Biology. 207-215. DOI: 10.1002/9780470750865.ch18  0.48
2006 Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Söll D, Nureki O. Structural basis of RNA-dependent recruitment of glutamine to the genetic code. Science (New York, N.Y.). 312: 1950-4. PMID 16809540 DOI: 10.1126/science.1128470  0.48
2005 Feng L, Sheppard K, Tumbula-Hansen D, Söll D. Gln-tRNAGln formation from Glu-tRNAGln requires cooperation of an asparaginase and a Glu-tRNAGln kinase. The Journal of Biological Chemistry. 280: 8150-5. PMID 15611111 DOI: 10.1074/jbc.M411098200  0.48
2004 Feng L, Sheppard K, Namgoong S, Ambrogelly A, Polycarpo C, Randau L, Tumbula-Hansen D, Söll D. Aminoacyl-tRNA synthesis by pre-translational amino acid modification. Rna Biology. 1: 16-20. PMID 17194933  0.48
2001 Olivier M, Bustos VI, Levy MR, Smick GA, Moreno I, Bushard JM, Almendras AA, Sheppard K, Zierten DL, Aggarwal A, Carlson CS, Foster BD, Vo N, Kelly L, Liu X, et al. Complex high-resolution linkage disequilibrium and haplotype patterns of single-nucleotide polymorphisms in 2.5 Mb of sequence on human chromosome 21. Genomics. 78: 64-72. PMID 11707074 DOI: 10.1006/geno.2001.6646  0.48
2001 Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, Chung TR, De Witte A, Denys ME, Dominguez R, Fang NY, ... ... Sheppard K, et al. A high-resolution radiation hybrid map of the human genome draft sequence. Science (New York, N.Y.). 291: 1298-302. PMID 11181994 DOI: 10.1126/science.1057437  0.48
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