Oleg Tsodikov - Publications

Chemistry University of Kentucky, Lexington, KY 

87 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Punetha A, Ngo HX, Holbrook SYL, Green KD, Willby MJ, Bonnett SA, Krieger K, Dennis EK, Posey JE, Parish T, Tsodikov OV, Garneau-Tsodikova S. Structure-Guided Optimization of Inhibitors of Acetyltransferase Eis from . Acs Chemical Biology. PMID 32421305 DOI: 10.1021/acschembio.0c00184  0.68
2019 Thamban Chandrika N, Fosso MY, Tsodikov OV, LeVine Iii H, Garneau-Tsodikova S. Combining Chalcones with Donepezil to Inhibit Both Cholinesterases and Aβ Fibril Assembly. Molecules (Basel, Switzerland). 25. PMID 31878304 DOI: 10.3390/molecules25010077  0.68
2019 Wheeler R, Yu X, Hou C, Mitra P, Chen JM, Herkules F, Ivanov DN, Tsodikov OV, Rohr J. Discovery of a Cryptic Intermediate in Late Steps of Mithramycin Biosynthesis. Angewandte Chemie (International Ed. in English). PMID 31702856 DOI: 10.1002/anie.201910241  0.56
2019 Green KD, Punetha A, Hou C, Garneau-Tsodikova S, Tsodikov OV. Probing the Robustness of Inhibitors of Tuberculosis Aminoglycoside Resistance Enzyme Eis by Mutagenesis. Acs Infectious Diseases. PMID 31433614 DOI: 10.1021/acsinfecdis.9b00228  0.68
2019 Hou C, Rohr J, Parkin S, Tsodikov OV. How mithramycin stereochemistry dictates its structure and DNA binding function. Medchemcomm. 10: 735-741. PMID 31191864 DOI: 10.1039/c9md00100j  0.56
2019 Mori S, Pang AH, Chandrika NT, Garneau-Tsodikova S, Tsodikov OV. Publisher Correction: Unusual substrate and halide versatility of phenolic halogenase PltM. Nature Communications. 10: 2053. PMID 31040284 DOI: 10.1038/s41467-019-09731-8  0.68
2019 Mori S, Pang AH, Thamban Chandrika N, Garneau-Tsodikova S, Tsodikov OV. Unusual substrate and halide versatility of phenolic halogenase PltM. Nature Communications. 10: 1255. PMID 30890712 DOI: 10.1038/s41467-019-09215-9  0.68
2019 Hou C, Tsodikov OV. Utilizing guanine-coordinated Zn ions to determine DNA crystal structures by single-wavelength anomalous diffraction. Acta Crystallographica. Section D, Structural Biology. 75: 32-40. PMID 30644843 DOI: 10.1107/S205979831801553X  0.56
2018 Holbrook SYL, Gentry MS, Tsodikov OV, Garneau-Tsodikova S. Nucleoside triphosphate cosubstrates control the substrate profile and efficiency of aminoglycoside 3'--phosphotransferase type IIa. Medchemcomm. 9: 1332-1339. PMID 30151088 DOI: 10.1039/c8md00234g  0.68
2018 Pang AH, Obiero JM, Kulczyk AW, Sviripa VM, Tsodikov OV. A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament. The Febs Journal. PMID 29905014 DOI: 10.1111/febs.14585  0.68
2018 Ngo HX, Green KD, Gajadeera CS, Willby MJ, Holbrook SYL, Hou C, Garzan A, Mayhoub AS, Posey JE, Tsodikov OV, Garneau-Tsodikova S. Potent 1,2,4-Triazino[5,6 b]indole-3-thioether Inhibitors of the Kanamycin Resistance Enzyme Eis from Mycobacterium tuberculosis. Acs Infectious Diseases. PMID 29601176 DOI: 10.1021/acsinfecdis.8b00074  0.68
2018 Hou C, Biswas T, Tsodikov O. Structures of the catalytic domain of bacterial primase DnaG in complexes with DNA provide insight into key priming events. Biochemistry. PMID 29558114 DOI: 10.1021/acs.biochem.8b00036  0.56
2018 Mori S, Pang AH, Lundy TA, Garzan A, Tsodikov OV, Garneau-Tsodikova S. Structural basis for backbone N-methylation by an interrupted adenylation domain. Nature Chemical Biology. PMID 29556104 DOI: 10.1038/s41589-018-0014-7  0.68
2018 Green KD, Biswas T, Pang AH, Willby MJ, Reed MS, Stuchlik O, Pohl J, Posey JE, Tsodikov OV, Garneau-Tsodikova S. Acetylation by Eis and Deacetylation by Rv1151c of Mycobacterium tuberculosis HupB: Biochemical and Structural Insight. Biochemistry. PMID 29345920 DOI: 10.1021/acs.biochem.7b01089  0.68
2017 Thamban Chandrika N, Shrestha SK, Ngo HX, Tsodikov OV, Howard KC, Garneau-Tsodikova S. Alkylated Piperazines and Piperazine-Azole Hybrids as Antifungal Agents. Journal of Medicinal Chemistry. PMID 29256601 DOI: 10.1021/acs.jmedchem.7b01138  0.68
2017 Mori S, Garzan A, Tsodikov OV, Garneau-Tsodikova S. Deciphering Nature's Intricate Way of N,S-Dimethylating l-Cysteine: Sequential Action of Two Bifunctional Adenylation Domains. Biochemistry. PMID 29112395 DOI: 10.1021/acs.biochem.7b00980  0.68
2017 Garzan A, Willby MJ, Ngo HX, Gajadeera CS, Green KD, Holbrook SY, Hou C, Posey JE, Tsodikov OV, Garneau-Tsodikova S. Combating Eis-mediated kanamycin resistance of M. tuber-culosis by novel pyrrolo[1,5-a]pyrazine-based Eis inhibitors. Acs Infectious Diseases. PMID 28192916 DOI: 10.1021/acsinfecdis.6b00193  0.68
2017 Pang AH, Garneau-Tsodikova S, Tsodikov OV. In Vitro Assays to Identify Antibiotics Targeting DNA Metabolism. Methods in Molecular Biology (Clifton, N.J.). 1520: 175-200. PMID 27873253 DOI: 10.1007/978-1-4939-6634-9_11  0.68
2016 Garzan A, Willby MJ, Green KD, Tsodikov OV, Posey JE, Garneau-Tsodikova S. Discovery and Optimization of Two Eis Inhibitor Families as Kanamycin Adjuvants against Drug-Resistant M. tuberculosis. Acs Medicinal Chemistry Letters. 7: 1219-1221. PMID 27994767 DOI: 10.1021/acsmedchemlett.6b00261  0.68
2016 Weidenbach S, Hou C, Chen JM, Tsodikov OV, Rohr J. Towards understanding the mechanism of action of mithramycin and its analogues: dimerization and DNA binding studies. Planta Medica. 81: S1-S381. PMID 27975447 DOI: 10.1055/s-0036-1596246  0.56
2016 Garzan A, Willby MJ, Green KD, Gajadeera CS, Hou C, Tsodikov OV, Posey JE, Garneau-Tsodikova S. Sulfonamide-Based Inhibitors of Aminoglycoside Acetyltransferase Eis Abolish Resistance to Kanamycin in Mycobacterium tuberculosis. Journal of Medicinal Chemistry. 59: 10619-10628. PMID 27933949 DOI: 10.1021/acs.jmedchem.6b01161  0.68
2016 Pang AH, Garzan A, Larsen MJ, McQuade TJ, Garneau-Tsodikova S, Tsodikov OV. Discovery of allosteric and selective inhibitors of inorganic pyrophosphatase from Mycobacterium tuberculosis. Acs Chemical Biology. PMID 27622287 DOI: 10.1021/acschembio.6b00510  0.68
2016 Hou C, Weidenbach S, Cano KE, Wang Z, Mitra P, Ivanov DN, Rohr J, Tsodikov OV. Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1. Nucleic Acids Research. PMID 27587584 DOI: 10.1093/nar/gkw761  0.56
2016 Willby MJ, Green KD, Gajadeera CS, Hou C, Tsodikov OV, Posey JE, Garneau-Tsodikova S. Potent inhibitors of acetyltransferase Eis overcome kanamycin re-sistance in Mycobacterium tuberculosis. Acs Chemical Biology. PMID 27010218 DOI: 10.1021/acschembio.6b00110  0.68
2016 Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D, Rajashankar K, Anderson KS, Baxter RH, Blacklow SC, Boggon TJ, ... ... Tsodikov OV, et al. Data publication with the structural biology data grid supports live analysis. Nature Communications. 7: 10882. PMID 26947396 DOI: 10.1038/ncomms10882  0.68
2015 Weidenbach S, Hou C, Chen JM, Tsodikov OV, Rohr J. Dimerization and DNA recognition rules of mithramycin and its analogues. Journal of Inorganic Biochemistry. 156: 40-47. PMID 26760230 DOI: 10.1016/j.jinorgbio.2015.12.011  0.68
2015 Hou C, Tsodikov OV. Structural basis for dimerization and DNA binding of transcription factor FLI1. Biochemistry. PMID 26618620 DOI: 10.1021/acs.biochem.5b01121  0.68
2015 Sviripa VM, Burikhanov R, Obiero JM, Yuan Y, Nickell JR, Dwoskin LP, Zhan CG, Liu C, Tsodikov OV, Rangnekar VM, Watt DS. Par-4 secretion: stoichiometry of 3-arylquinoline binding to vimentin. Organic & Biomolecular Chemistry. PMID 26548370 DOI: 10.1039/c5ob01980j  0.68
2015 Pang AH, Garneau-Tsodikova S, Tsodikov OV. Crystal structure of halogenase PltA from the pyoluteorin biosynthetic pathway. Journal of Structural Biology. PMID 26416533 DOI: 10.1016/j.jsb.2015.09.013  0.68
2015 Pratt AC, Dewage SW, Pang AH, Biswas T, Barnard-Britson S, Cisneros GA, Tsodikov OV. Structural and computational dissection of the catalytic mechanism of the inorganic pyrophosphatase from Mycobacterium tuberculosis. Journal of Structural Biology. 192: 76-87. PMID 26296329 DOI: 10.1016/j.jsb.2015.08.010  0.68
2015 Fosso MY, LeVine H, Green KD, Tsodikov OV, Garneau-Tsodikova S. Effects of structural modifications on the metal binding, anti-amyloid activity, and cholinesterase inhibitory activity of chalcones. Organic & Biomolecular Chemistry. 13: 9418-26. PMID 26248214 DOI: 10.1039/c5ob01478f  0.68
2015 Tsodikov OV, Hou C, Walsh CT, Garneau-Tsodikova S. Crystal structure of O-methyltransferase CalO6 from the calicheamicin biosynthetic pathway: a case of challenging structure determination at low resolution. Bmc Structural Biology. 15: 13. PMID 26170207 DOI: 10.1186/s12900-015-0040-6  0.68
2015 Green KD, Biswas T, Chang C, Wu R, Chen W, Janes BK, Chalupska D, Gornicki P, Hanna PC, Tsodikov OV, Joachimiak A, Garneau-Tsodikova S. Biochemical and Structural Analysis of an Eis Family Aminoglycoside Acetyltransferase from Bacillus anthracis. Biochemistry. 54: 3197-206. PMID 25928210 DOI: 10.1021/acs.biochem.5b00244  0.68
2015 Leggas D, Tsodikov OV. Determination of small crystal structures from a minimum set of diffraction intensities by homotopy continuation. Acta Crystallographica. Section a, Foundations and Advances. 71: 319-24. PMID 25921500 DOI: 10.1107/S2053273315003551  0.68
2015 Chen JM, Hou C, Wang G, Tsodikov OV, Rohr J. Structural insight into MtmC, a bifunctional ketoreductase-methyltransferase involved in the assembly of the mithramycin trisaccharide chain. Biochemistry. 54: 2481-9. PMID 25587924 DOI: 10.1021/bi501462g  0.68
2015 Gajadeera CS, Zhang X, Wei Y, Tsodikov OV. Structure of inorganic pyrophosphatase from Staphylococcus aureus reveals conformational flexibility of the active site. Journal of Structural Biology. 189: 81-6. PMID 25576794 DOI: 10.1016/j.jsb.2014.12.003  0.68
2015 Gajadeera C, Willby MJ, Green KD, Shaul P, Fridman M, Garneau-Tsodikova S, Posey JE, Tsodikov OV. Antimycobacterial activity of DNA intercalator inhibitors of Mycobacterium tuberculosis primase DnaG. The Journal of Antibiotics. 68: 153-7. PMID 25248725 DOI: 10.1038/ja.2014.131  0.68
2015 Tsodikov OV, Hou C, Walsh CT, Garneau-Tsodikova S. Crystal structure of O-methyltransferase CalO6 from the calicheamicin biosynthetic pathway: A case of challenging structure determination at low resolution Bmc Structural Biology. 15. DOI: 10.1186/s12900-015-0040-6  0.68
2015 Fosso MY, LeVine H, Green KD, Tsodikov OV, Garneau-Tsodikova S. Effects of structural modifications on the metal binding, anti-amyloid activity, and cholinesterase inhibitory activity of chalcones Organic and Biomolecular Chemistry. 13: 9418-9426. DOI: 10.1039/c5ob01478f  0.68
2014 Al-Asadi A, Leggas D, Tsodikov OV. Ambiguity of structure determination from a minimum of diffraction intensities. Acta Crystallographica. Section a, Foundations and Advances. 70: 354-7. PMID 25970192 DOI: 10.1107/S2053273314007578  0.68
2014 Sviripa VM, Zhang W, Balia AG, Tsodikov OV, Nickell JR, Gizard F, Yu T, Lee EY, Dwoskin LP, Liu C, Watt DS. 2',6'-Dihalostyrylanilines, pyridines, and pyrimidines for the inhibition of the catalytic subunit of methionine S-adenosyltransferase-2. Journal of Medicinal Chemistry. 57: 6083-91. PMID 24950374 DOI: 10.1021/jm5004864  0.68
2014 De-Donatis GM, Zhao Z, Wang S, Huang LP, Schwartz C, Tsodikov OV, Zhang H, Haque F, Guo P. Finding of widespread viral and bacterial revolution dsDNA translocation motors distinct from rotation motors by channel chirality and size. Cell & Bioscience. 4: 30. PMID 24940480 DOI: 10.1186/2045-3701-4-30  0.68
2014 Tsodikov OV, Green KD, Garneau-Tsodikova S. A random sequential mechanism of aminoglycoside acetylation by Mycobacterium tuberculosis Eis protein. Plos One. 9: e92370. PMID 24699000 DOI: 10.1371/journal.pone.0092370  0.68
2013 Houghton JL, Biswas T, Chen W, Tsodikov OV, Garneau-Tsodikova S. Chemical and structural insights into the regioversatility of the aminoglycoside acetyltransferase Eis. Chembiochem : a European Journal of Chemical Biology. 14: 2127-35. PMID 24106131 DOI: 10.1002/cbic.201300359  0.68
2013 Guinn EJ, Kontur WS, Tsodikov OV, Shkel I, Record MT. Probing the protein-folding mechanism using denaturant and temperature effects on rate constants. Proceedings of the National Academy of Sciences of the United States of America. 110: 16784-9. PMID 24043778 DOI: 10.1073/pnas.1311948110  0.68
2013 Biswas T, Green KD, Garneau-Tsodikova S, Tsodikov OV. Discovery of inhibitors of Bacillus anthracis primase DnaG. Biochemistry. 52: 6905-10. PMID 24004110 DOI: 10.1021/bi4011286  0.68
2013 Diehl RC, Guinn EJ, Capp MW, Tsodikov OV, Record MT. Quantifying additive interactions of the osmolyte proline with individual functional groups of proteins: comparisons with urea and glycine betaine, interpretation of m-values. Biochemistry. 52: 5997-6010. PMID 23909383 DOI: 10.1021/bi400683y  0.68
2013 Larrouy-Maumus G, Biswas T, Hunt DM, Kelly G, Tsodikov OV, de Carvalho LP. Discovery of a glycerol 3-phosphate phosphatase reveals glycerophospholipid polar head recycling in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 110: 11320-5. PMID 23801751 DOI: 10.1073/pnas.1221597110  0.68
2013 Furman R, Biswas T, Danhart EM, Foster MP, Tsodikov OV, Artsimovitch I. DksA2, a zinc-independent structural analog of the transcription factor DksA. Febs Letters. 587: 614-9. PMID 23416301 DOI: 10.1016/j.febslet.2013.01.073  0.68
2013 Biswas T, Resto-Roldán E, Sawyer SK, Artsimovitch I, Tsodikov OV. A novel non-radioactive primase-pyrophosphatase activity assay and its application to the discovery of inhibitors of Mycobacterium tuberculosis primase DnaG. Nucleic Acids Research. 41: e56. PMID 23267008 DOI: 10.1093/nar/gks1292  0.68
2012 Malik S, Willby M, Sikes D, Tsodikov OV, Posey JE. New insights into fluoroquinolone resistance in Mycobacterium tuberculosis: functional genetic analysis of gyrA and gyrB mutations. Plos One. 7: e39754. PMID 22761889 DOI: 10.1371/journal.pone.0039754  0.68
2012 Chen W, Green KD, Tsodikov OV, Garneau-Tsodikova S. Aminoglycoside multiacetylating activity of the enhanced intracellular survival protein from Mycobacterium smegmatis and its inhibition. Biochemistry. 51: 4959-67. PMID 22646013 DOI: 10.1021/bi3004473  0.68
2012 Al-Asadi A, Chudin E, Tsodikov OV. Enumeration of one-dimensional crystal structures obtained from a minimum of diffraction intensities. Acta Crystallographica. Section a, Foundations of Crystallography. 68: 313-8. PMID 22514062 DOI: 10.1107/S0108767312002231  0.68
2012 Biswas T, Houghton JL, Garneau-Tsodikova S, Tsodikov OV. The structural basis for substrate versatility of chloramphenicol acetyltransferase CATI. Protein Science : a Publication of the Protein Society. 21: 520-30. PMID 22294317 DOI: 10.1002/pro.2036  0.68
2011 Chen W, Biswas T, Porter VR, Tsodikov OV, Garneau-Tsodikova S. Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB. Proceedings of the National Academy of Sciences of the United States of America. 108: 9804-8. PMID 21628583 DOI: 10.1073/pnas.1105379108  0.68
2011 Tsodikov OV, Biswas T. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. Journal of Molecular Biology. 410: 461-76. PMID 21620858 DOI: 10.1016/j.jmb.2011.05.007  0.68
2011 Shkel IA, Lee HS, Tsodikov OV. Conditional ambiguity of one-dimensional crystal structures determined from a minimum of diffraction intensity data. Acta Crystallographica. Section a, Foundations of Crystallography. 67: 292-6. PMID 21487188 DOI: 10.1107/S0108767311007616  0.68
2010 Biswas T, Small J, Vandal O, Odaira T, Deng H, Ehrt S, Tsodikov OV. Structural insight into serine protease Rv3671c that Protects M. tuberculosis from oxidative and acidic stress. Structure (London, England : 1993). 18: 1353-63. PMID 20947023 DOI: 10.1016/j.str.2010.06.017  0.68
2010 Biswas T, Tsodikov OV. An easy-to-use tool for planning and modeling a calorimetric titration. Analytical Biochemistry. 406: 91-3. PMID 20615384 DOI: 10.1016/j.ab.2010.06.050  0.68
2010 Biswas T, Zolova OE, Lombó F, de la Calle F, Salas JA, Tsodikov OV, Garneau-Tsodikova S. A new scaffold of an old protein fold ensures binding to the bisintercalator thiocoraline. Journal of Molecular Biology. 397: 495-507. PMID 20122935 DOI: 10.1016/j.jmb.2010.01.053  0.68
2010 Orelli B, McClendon TB, Tsodikov OV, Ellenberger T, Niedernhofer LJ, Schärer OD. The XPA-binding domain of ERCC1 is required for nucleotide excision repair but not other DNA repair pathways. The Journal of Biological Chemistry. 285: 3705-12. PMID 19940136 DOI: 10.1074/jbc.M109.067538  0.68
2009 Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV. The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase. The Journal of Biological Chemistry. 284: 30594-603. PMID 19726684 DOI: 10.1074/jbc.M109.012278  0.68
2009 Garneau-Tsodikova S, Shkel IA, Tsodikov OV. Exact and user-friendly kinetic analysis of the two-step rapid equilibrium Michaelis-Menten mechanism. Analytical Biochemistry. 387: 276-9. PMID 19344659 DOI: 10.1016/j.ab.2009.01.023  0.68
2009 Biswas T, Pero JM, Joseph CG, Tsodikov OV. DNA-dependent ATPase activity of bacterial XPB helicases. Biochemistry. 48: 2839-48. PMID 19199647 DOI: 10.1021/bi8022416  0.68
2009 McQuade TJ, Shallop AD, Sheoran A, Delproposto JE, Tsodikov OV, Garneau-Tsodikova S. A nonradioactive high-throughput assay for screening and characterization of adenylation domains for nonribosomal peptide combinatorial biosynthesis. Analytical Biochemistry. 386: 244-50. PMID 19135023 DOI: 10.1016/j.ab.2008.12.014  0.68
2008 Bagwell CE, Bhat S, Hawkins GM, Smith BW, Biswas T, Hoover TR, Saunders E, Han CS, Tsodikov OV, Shimkets LJ. Survival in nuclear waste, extreme resistance, and potential applications gleaned from the genome sequence of Kineococcus radiotolerans SRS30216. Plos One. 3: e3878. PMID 19057647 DOI: 10.1371/journal.pone.0003878  0.68
2008 Biswas T, Tsodikov OV. Hexameric ring structure of the N-terminal domain of Mycobacterium tuberculosis DnaB helicase. The Febs Journal. 275: 3064-71. PMID 18479467 DOI: 10.1111/j.1742-4658.2008.06460.x  0.68
2007 Tsodikov OV, Ivanov D, Orelli B, Staresincic L, Shoshani I, Oberman R, Schärer OD, Wagner G, Ellenberger T. Structural basis for the recruitment of ERCC1-XPF to nucleotide excision repair complexes by XPA. The Embo Journal. 26: 4768-76. PMID 17948053 DOI: 10.1038/sj.emboj.7601894  0.68
2007 Ivanov D, Tsodikov OV, Kasanov J, Ellenberger T, Wagner G, Collins T. Domain-swapped dimerization of the HIV-1 capsid C-terminal domain. Proceedings of the National Academy of Sciences of the United States of America. 104: 4353-8. PMID 17360528 DOI: 10.1073/pnas.0609477104  0.68
2006 Pascal JM, Tsodikov OV, Hura GL, Song W, Cotner EA, Classen S, Tomkinson AE, Tainer JA, Ellenberger T. A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA. Molecular Cell. 24: 279-91. PMID 17052461 DOI: 10.1016/j.molcel.2006.08.015  0.68
2005 Tsodikov OV, Enzlin JH, Schärer OD, Ellenberger T. Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proceedings of the National Academy of Sciences of the United States of America. 102: 11236-41. PMID 16076955 DOI: 10.1073/pnas.0504341102  0.68
2005 Varadwaj PK, Lahiri T, Tsodikov O. Surface roughness index, a novel approach to compare protein surfaces Proceedings - 2005 International Conference On Intelligent Sensing and Information Processing, Icisip'05. 2005: 474-478. DOI: 10.1109/ICISIP.2005.1529501  0.68
2003 Saecker RM, Tsodikov OV, Capp MW, Record MT. Rapid quench mixing to quantify kinetics of steps in association of Escherichia coli RNA polymerase with promoter DNA. Methods in Enzymology. 370: 535-46. PMID 14712673 DOI: 10.1016/S0076-6879(03)70045-7  0.68
2002 Saecker RM, Tsodikov OV, McQuade KL, Schlax PE, Capp MW, Record MT. Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates. Journal of Molecular Biology. 319: 649-71. PMID 12054861 DOI: 10.1016/S0022-2836(02)00293-0  0.68
2002 Tsodikov OV, Record MT, Sergeev YV. Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. Journal of Computational Chemistry. 23: 600-9. PMID 11939594 DOI: 10.1002/jcc.10061  0.68
2002 Tsujikawa L, Tsodikov OV, deHaseth PL. Interaction of RNA polymerase with forked DNA: evidence for two kinetically significant intermediates on the pathway to the final complex. Proceedings of the National Academy of Sciences of the United States of America. 99: 3493-8. PMID 11891334 DOI: 10.1073/pnas.062487299  0.68
2002 Shkel IA, Tsodikov OV, Record MT. Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient. Proceedings of the National Academy of Sciences of the United States of America. 99: 2597-602. PMID 11880615 DOI: 10.1073/pnas.032480699  0.68
2001 Tsodikov OV, Holbrook JA, Shkel IA, Record MT. Analytic binding isotherms describing competitive interactions of a protein ligand with specific and nonspecific sites on the same DNA oligomer. Biophysical Journal. 81: 1960-9. PMID 11566770 DOI: 10.1016/S0006-3495(01)75847-X  0.68
2001 Holbrook JA, Tsodikov OV, Saecker RM, Record MT. Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding. Journal of Molecular Biology. 310: 379-401. PMID 11428896 DOI: 10.1006/jmbi.2001.4768  0.68
2000 Shkel IA, Tsodikov OV, Record MT. Complete Asymptotic Solution of Cylindrical and Spherical Poisson-Boltzmann Equations at Experimental Salt Concentrations Journal of Physical Chemistry B. 104: 5161-5170.  0.68
1999 Tsodikov OV, Saecker RM, Melcher SE, Levandoski MM, Frank DE, Capp MW, Record MT. Wrapping of flanking non-operator DNA in lac repressor-operator complexes: implications for DNA looping. Journal of Molecular Biology. 294: 639-55. PMID 10610786 DOI: 10.1006/jmbi.1999.3283  0.68
1999 Arenson TA, Tsodikov OV, Cox MM. Quantitative analysis of the kinetics of end-dependent disassembly of RecA filaments from ssDNA. Journal of Molecular Biology. 288: 391-401. PMID 10329149 DOI: 10.1006/jmbi.1999.2705  0.68
1999 Tsodikov OV, Record MT. General method of analysis of kinetic equations for multistep reversible mechanisms in the single-exponential regime: application to kinetics of open complex formation between Esigma70 RNA polymerase and lambdaP(R) promoter DNA. Biophysical Journal. 76: 1320-9. PMID 10049315 DOI: 10.1016/S0006-3495(99)77294-2  0.68
1998 Tsodikov OV, Craig ML, Saecker RM, Record MT. Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase. Journal of Molecular Biology. 283: 757-69. PMID 9790838 DOI: 10.1006/jmbi.1998.2130  0.68
1998 Craig ML, Tsodikov OV, McQuade KL, Schlax PE, Capp MW, Saecker RM, Record MT. DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA. Journal of Molecular Biology. 283: 741-56. PMID 9790837 DOI: 10.1006/jmbi.1998.2129  0.68
1997 Frank DE, Saecker RM, Bond JP, Capp MW, Tsodikov OV, Melcher SE, Levandoski MM, Record MT. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. Journal of Molecular Biology. 267: 1186-206. PMID 9150406 DOI: 10.1006/jmbi.1997.0920  0.68
1996 Levandoski MM, Tsodikov OV, Frank DE, Melcher SE, Saecker RM, Record MT. Cooperative and anticooperative effects in binding of the first and second plasmid Osym operators to a LacI tetramer: evidence for contributions of non-operator DNA binding by wrapping and looping. Journal of Molecular Biology. 260: 697-717. PMID 8709149 DOI: 10.1006/jmbi.1996.0431  0.68
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