Dario Beraldi - Publications

Affiliations: 
University of Cambridge, Cambridge, England, United Kingdom 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Raiber EA, Portella G, Martínez Cuesta S, Hardisty R, Murat P, Li Z, Iurlaro M, Dean W, Spindel J, Beraldi D, Liu Z, Dawson MA, Reik W, Balasubramanian S. 5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells. Nature Chemistry. PMID 30349137 DOI: 10.1038/s41557-018-0149-x  0.76
2018 Mao SQ, Ghanbarian AT, Spiegel J, Martínez Cuesta S, Beraldi D, Di Antonio M, Marsico G, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. DNA G-quadruplex structures mold the DNA methylome. Nature Structural & Molecular Biology. PMID 30275516 DOI: 10.1038/s41594-018-0131-8  0.76
2018 Kawasaki F, Martínez Cuesta S, Beraldi D, Mahtey A, Hardisty RE, Carrington M, Balasubramanian S. Sequencing 5-hydroxymethyluracil at single-base resolution. Angewandte Chemie (International Ed. in English). PMID 29882366 DOI: 10.1002/anie.201804046  0.76
2017 Raiber EA, Beraldi D, Martínez Cuesta S, McInroy GR, Kingsbury Z, Becq J, James T, Lopes M, Allinson K, Field S, Humphray S, Santarius T, Watts C, Bentley D, Balasubramanian S. Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma. Npj Genomic Medicine. 2: 6. PMID 29263824 DOI: 10.1038/s41525-017-0007-6  0.76
2017 Kawasaki F, Beraldi D, Hardisty RE, McInroy GR, van Delft P, Balasubramanian S. Genome-wide mapping of 5-hydroxymethyluracil in the eukaryote parasite Leishmania. Genome Biology. 18: 23. PMID 28137275 DOI: 10.1186/s13059-017-1150-1  0.76
2016 Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, Di Antonio M, Pike J, Kimura H, Narita M, Tannahill D, Balasubramanian S. G-quadruplex structures mark human regulatory chromatin. Nature Genetics. PMID 27618450 DOI: 10.1038/ng.3662  0.64
2016 Iurlaro M, McInroy GR, Burgess HE, Dean W, Raiber EA, Bachman M, Beraldi D, Balasubramanian S, Reik W. In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine. Genome Biology. 17: 141. PMID 27356509 DOI: 10.1186/s13059-016-1001-5  0.64
2016 McInroy GR, Beraldi D, Raiber EA, Modrzynska K, van Delft P, Billker O, Balasubramanian S. Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments. Plos One. 11: e0152322. PMID 27031619 DOI: 10.1371/journal.pone.0152322  0.64
2015 Robert C, Kapetanovic R, Beraldi D, Watson M, Archibald AL, Hume DA. Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome. Bmc Genomics. 16: 970. PMID 26582032 DOI: 10.1186/s12864-015-2111-2  0.64
2015 Sanders DA, Gormally MV, Marsico G, Beraldi D, Tannahill D, Balasubramanian S. FOXM1 binds directly to non-consensus sequences in the human genome. Genome Biology. 16: 130. PMID 26100407 DOI: 10.1186/s13059-015-0696-z  0.64
2015 Field SF, Beraldi D, Bachman M, Stewart SK, Beck S, Balasubramanian S. Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array). Plos One. 10: e0118202. PMID 25706862 DOI: 10.1371/journal.pone.0118202  0.64
2015 Raiber EA, Murat P, Chirgadze DY, Beraldi D, Luisi BF, Balasubramanian S. 5-Formylcytosine alters the structure of the DNA double helix. Nature Structural & Molecular Biology. 22: 44-9. PMID 25504322 DOI: 10.1038/nsmb.2936  0.64
2014 Booth MJ, Marsico G, Bachman M, Beraldi D, Balasubramanian S. Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution. Nature Chemistry. 6: 435-40. PMID 24755596 DOI: 10.1038/nchem.1893  0.64
2013 Booth MJ, Ost TW, Beraldi D, Bell NM, Branco MR, Reik W, Balasubramanian S. Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine. Nature Protocols. 8: 1841-51. PMID 24008380 DOI: 10.1038/nprot.2013.115  0.64
2013 Kapetanovic R, Fairbairn L, Downing A, Beraldi D, Sester DP, Freeman TC, Tuggle CK, Archibald AL, Hume DA. The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide. Bmc Genomics. 14: 581. PMID 23984833 DOI: 10.1186/1471-2164-14-581  0.64
2013 Dawson HD, Loveland JE, Pascal G, Gilbert JG, Uenishi H, Mann KM, Sang Y, Zhang J, Carvalho-Silva D, Hunt T, Hardy M, Hu Z, Zhao SH, Anselmo A, Shinkai H, ... ... Beraldi D, et al. Structural and functional annotation of the porcine immunome. Bmc Genomics. 14: 332. PMID 23676093 DOI: 10.1186/1471-2164-14-332  0.64
2013 Fairbairn L, Kapetanovic R, Beraldi D, Sester DP, Tuggle CK, Archibald AL, Hume DA. Comparative analysis of monocyte subsets in the pig. Journal of Immunology (Baltimore, Md. : 1950). 190: 6389-96. PMID 23667115 DOI: 10.4049/jimmunol.1300365  0.64
2013 Lam EY, Beraldi D, Tannahill D, Balasubramanian S. G-quadruplex structures are stable and detectable in human genomic DNA. Nature Communications. 4: 1796. PMID 23653208 DOI: 10.1038/ncomms2792  0.64
2013 Sanders DA, Ross-Innes CS, Beraldi D, Carroll JS, Balasubramanian S. Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells. Genome Biology. 14: R6. PMID 23347430 DOI: 10.1186/gb-2013-14-1-r6  0.64
2013 Brown EA, Pilkington JG, Nussey DH, Watt KA, Hayward AD, Tucker R, Graham AL, Paterson S, Beraldi D, Pemberton JM, Slate J. Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach. Molecular Ecology. 22: 757-73. PMID 22998224 DOI: 10.1111/j.1365-294X.2012.05757.x  0.64
2012 Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, et al. A gene expression atlas of the domestic pig. Bmc Biology. 10: 90. PMID 23153189 DOI: 10.1186/1741-7007-10-90  0.64
2012 Endale Ahanda ML, Fritz ER, Estellé J, Hu ZL, Madsen O, Groenen MA, Beraldi D, Kapetanovic R, Hume DA, Rowland RR, Lunney JK, Rogel-Gaillard C, Reecy JM, Giuffra E. Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region. Plos One. 7: e48607. PMID 23139801 DOI: 10.1371/journal.pone.0048607  0.64
2012 Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. Genome Biology. 13: R69. PMID 22902005 DOI: 10.1186/gb-2012-13-8-r69  0.64
2012 Kapetanovic R, Fairbairn L, Beraldi D, Sester DP, Archibald AL, Tuggle CK, Hume DA. Pig bone marrow-derived macrophages resemble human macrophages in their response to bacterial lipopolysaccharide. Journal of Immunology (Baltimore, Md. : 1950). 188: 3382-94. PMID 22393154 DOI: 10.4049/jimmunol.1102649  0.64
2011 Johnston SE, McEwan JC, Pickering NK, Kijas JW, Beraldi D, Pilkington JG, Pemberton JM, Slate J. Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population. Molecular Ecology. 20: 2555-66. PMID 21651634 DOI: 10.1111/j.1365-294X.2011.05076.x  0.64
2011 Pemberton JM, Beraldi D, Craig BH, Hopkins J. Digital gene expression analysis of gastrointestinal helminth resistance in Scottish blackface lambs. Molecular Ecology. 20: 910-9. PMID 21324010 DOI: 10.1111/j.1365-294X.2010.04992.x  0.64
2010 Hernández-Sánchez J, Chatzipli A, Beraldi D, Gratten J, Pilkington JG, Pemberton JM. Mapping quantitative trait loci in a wild population using linkage and linkage disequilibrium analyses. Genetics Research. 92: 273-81. PMID 20943008 DOI: 10.1017/S0016672310000340  0.64
2010 Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S, Thomson M, Trivedi U, Otto TD, Pain A, Blaxter M, et al. Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. Bmc Genomics. 11: 499. PMID 20846421 DOI: 10.1186/1471-2164-11-499  0.64
2010 Gratten J, Wilson AJ, McRae AF, Beraldi D, Visscher PM, Pemberton JM, Slate J. No evidence for warming climate theory of coat colour change in Soay sheep: a comment on Maloney et al. Biology Letters. 6: 678-9; discussion 68. PMID 20375045 DOI: 10.1098/rsbl.2010.0160  0.64
2010 Tarka M, Akesson M, Beraldi D, Hernández-Sánchez J, Hasselquist D, Bensch S, Hansson B. A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers. Proceedings. Biological Sciences / the Royal Society. 277: 2361-9. PMID 20335216 DOI: 10.1098/rspb.2010.0033  0.64
2010 Johnston SE, Beraldi D, McRae AF, Pemberton JM, Slate J. Horn type and horn length genes map to the same chromosomal region in Soay sheep. Heredity. 104: 196-205. PMID 19690581 DOI: 10.1038/hdy.2009.109  0.64
2010 Gratten J, Pilkington JG, Brown EA, Beraldi D, Pemberton JM, Slate J. The genetic basis of recessive self-colour pattern in a wild sheep population. Heredity. 104: 206-14. PMID 19672282 DOI: 10.1038/hdy.2009.105  0.64
2009 Slate J, Gratten J, Beraldi D, Stapley J, Hale M, Pemberton JM. Gene mapping in the wild with SNPs: guidelines and future directions. Genetica. 136: 97-107. PMID 18780148 DOI: 10.1007/s10709-008-9317-z  0.64
2008 Beraldi D, Craig BH, Bishop SC, Hopkins J, Pemberton JM. Phenotypic analysis of host-parasite interactions in lambs infected with Teladorsagia circumcincta. International Journal For Parasitology. 38: 1567-77. PMID 18589425 DOI: 10.1016/j.ijpara.2008.04.011  0.64
2008 Gratten J, Wilson AJ, McRae AF, Beraldi D, Visscher PM, Pemberton JM, Slate J. A localized negative genetic correlation constrains microevolution of coat color in wild sheep. Science (New York, N.Y.). 319: 318-20. PMID 18202287 DOI: 10.1126/science.1151182  0.64
2007 Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM. Mapping quantitative trait Loci underlying fitness-related traits in a free-living sheep population. Evolution; International Journal of Organic Evolution. 61: 1403-16. PMID 17542849 DOI: 10.1111/j.1558-5646.2007.00106.x  0.64
2007 Gratten J, Beraldi D, Lowder BV, McRae AF, Visscher PM, Pemberton JM, Slate J. Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep. Proceedings. Biological Sciences / the Royal Society. 274: 619-26. PMID 17254985 DOI: 10.1098/rspb.2006.3762  0.64
2007 Beraldi D, McRae AF, Gratten J, Pilkington JG, Slate J, Visscher PM, Pemberton JM. Quantitative trait loci (QTL) mapping of resistance to strongyles and coccidia in the free-living Soay sheep (Ovis aries). International Journal For Parasitology. 37: 121-9. PMID 17067607 DOI: 10.1016/j.ijpara.2006.09.007  0.64
2006 Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM. Development of a linkage map and mapping of phenotypic polymorphisms in a free-living population of Soay sheep (Ovis aries). Genetics. 173: 1521-37. PMID 16868121 DOI: 10.1534/genetics.106.057141  0.64
2006 Csilléry K, Johnson T, Beraldi D, Clutton-Brock T, Coltman D, Hansson B, Spong G, Pemberton JM. Performance of marker-based relatedness estimators in natural populations of outbred vertebrates. Genetics. 173: 2091-101. PMID 16783017 DOI: 10.1534/genetics.106.057331  0.64
2006 McRae AF, Beraldi D. Examination of a region showing linkage map discrepancies across sheep breeds. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 346-53. PMID 16596456 DOI: 10.1007/s00335-005-0087-y  0.64
2004 Beraldi D, Picarella ME, Soressi GP, Mazzucato A. Fine mapping of the parthenocarpic fruit ( pat) mutation in tomato. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 108: 209-16. PMID 14564391 DOI: 10.1007/s00122-003-1442-6  0.64
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