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David Tannahill, Ph.D. - Publications

Affiliations: 
2010- Chemistry University of Cambridge, Cambridge, England, United Kingdom 
Area:
Molecular Biology
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Flynn SM, Dhir S, Herka K, Doyle C, Melidis L, Simeone A, Hui WWI, Araujo Tavares RC, Schoenfelder S, Tannahill D, Balasubramanian S. Improved simultaneous mapping of epigenetic features and 3D chromatin structure via ViCAR. Genome Biology. 25: 237. PMID 39227991 DOI: 10.1186/s13059-024-03377-6  0.51
2024 Chen Y, Simeone A, Melidis L, Cuesta SM, Tannahill D, Balasubramanian S. An Upstream G-Quadruplex DNA Structure Can Stimulate Gene Transcription. Acs Chemical Biology. PMID 38417105 DOI: 10.1021/acschembio.3c00775  0.591
2024 Esain-Garcia I, Kirchner A, Melidis L, Tavares RCA, Dhir S, Simeone A, Yu Z, Madden SK, Hermann R, Tannahill D, Balasubramanian S. G-quadruplex DNA structure is a positive regulator of transcription. Proceedings of the National Academy of Sciences of the United States of America. 121: e2320240121. PMID 38315865 DOI: 10.1073/pnas.2320240121  0.597
2022 Galli S, Melidis L, Flynn SM, Varshney D, Simeone A, Spiegel J, Madden SK, Tannahill D, Balasubramanian S. DNA G-Quadruplex Recognition In Vitro and in Live Cells by a Structure-Specific Nanobody. Journal of the American Chemical Society. PMID 36488193 DOI: 10.1021/jacs.2c10656  0.598
2022 Hui WWI, Simeone A, Zyner KG, Tannahill D, Balasubramanian S. Publisher Correction: Single-cell mapping of DNA G-quadruplex structures in human cancer cells. Scientific Reports. 12: 908. PMID 35022562 DOI: 10.1038/s41598-022-05047-8  0.53
2022 Zyner KG, Simeone A, Flynn SM, Doyle C, Marsico G, Adhikari S, Portella G, Tannahill D, Balasubramanian S. G-quadruplex DNA structures in human stem cells and differentiation. Nature Communications. 13: 142. PMID 35013231 DOI: 10.1038/s41467-021-27719-1  0.58
2021 Hui WWI, Simeone A, Zyner KG, Tannahill D, Balasubramanian S. Single-cell mapping of DNA G-quadruplex structures in human cancer cells. Scientific Reports. 11: 23641. PMID 34880271 DOI: 10.1038/s41598-021-02943-3  0.58
2021 Varshney D, Cuesta SM, Herdy B, Abdullah UB, Tannahill D, Balasubramanian S. RNA G-quadruplex structures control ribosomal protein production. Scientific Reports. 11: 22735. PMID 34815422 DOI: 10.1038/s41598-021-01847-6  0.54
2021 Shen J, Varshney D, Simeone A, Zhang X, Adhikari S, Tannahill D, Balasubramanian S. Promoter G-quadruplex folding precedes transcription and is controlled by chromatin. Genome Biology. 22: 143. PMID 33962653 DOI: 10.1186/s13059-021-02346-7  0.574
2021 Spiegel J, Cuesta SM, Adhikari S, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. G-quadruplexes are transcription factor binding hubs in human chromatin. Genome Biology. 22: 117. PMID 33892767 DOI: 10.1186/s13059-021-02324-z  0.507
2020 Xu YZ, Jenjaroenpun P, Wongsurawat T, Byrum SD, Shponka V, Tannahill D, Chavez EA, Hung SS, Steidl C, Balasubramanian S, Rimsza LM, Kendrick S. Activation-induced cytidine deaminase localizes to G-quadruplex motifs at mutation hotspots in lymphoma. Nar Cancer. 2: zcaa029. PMID 33094287 DOI: 10.1093/narcan/zcaa029  0.553
2020 Hänsel-Hertsch R, Simeone A, Shea A, Hui WWI, Zyner KG, Marsico G, Rueda OM, Bruna A, Martin A, Zhang X, Adhikari S, Tannahill D, Caldas C, Balasubramanian S. Landscape of G-quadruplex DNA structural regions in breast cancer. Nature Genetics. PMID 32747825 DOI: 10.1038/S41588-020-0672-8  0.557
2020 Mao SQ, Cuesta SM, Tannahill D, Balasubramanian S. Genome-wide DNA methylation signatures are determined by DNMT3A/B sequence preferences. Biochemistry. PMID 32543182 DOI: 10.1021/Acs.Biochem.0C00339.S001  0.534
2020 Varshney D, Spiegel J, Zyner K, Tannahill D, Balasubramanian S. The regulation and functions of DNA and RNA G-quadruplexes. Nature Reviews. Molecular Cell Biology. PMID 32313204 DOI: 10.1038/S41580-020-0236-X  0.633
2019 Zyner KG, Mulhearn DS, Adhikari S, Martínez Cuesta S, Di Antonio M, Erard N, Hannon GJ, Tannahill D, Balasubramanian S. Genetic interactions of G-quadruplexes in humans. Elife. 8. PMID 31287417 DOI: 10.7554/Elife.46793  0.62
2019 Zyner KG, Mulhearn DS, Adhikari S, Cuesta SM, Antonio MD, Erard N, Hannon GJ, Tannahill D, Balasubramanian S. Author response: Genetic interactions of G-quadruplexes in humans Elife. DOI: 10.7554/Elife.46793.033  0.516
2018 Mao SQ, Ghanbarian AT, Spiegel J, Martínez Cuesta S, Beraldi D, Di Antonio M, Marsico G, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. DNA G-quadruplex structures mold the DNA methylome. Nature Structural & Molecular Biology. PMID 30275516 DOI: 10.1038/S41594-018-0131-8  0.619
2018 Herdy B, Mayer C, Varshney D, Marsico G, Murat P, Taylor C, D'Santos C, Tannahill D, Balasubramanian S. Analysis of NRAS RNA G-quadruplex binding proteins reveals DDX3X as a novel interactor of cellular G-quadruplex containing transcripts. Nucleic Acids Research. PMID 30256975 DOI: 10.1093/Nar/Gky861  0.555
2018 Schaeffer J, Tannahill D, Cioni JM, Rowlands D, Keynes R. Identification of the extracellular matrix protein Fibulin-2 as a regulator of spinal nerve organization. Developmental Biology. PMID 29944871 DOI: 10.1016/J.Ydbio.2018.06.014  0.318
2018 Hänsel-Hertsch R, Spiegel J, Marsico G, Tannahill D, Balasubramanian S. Genome-wide mapping of endogenous G-quadruplex DNA structures by chromatin immunoprecipitation and high-throughput sequencing. Nature Protocols. 13: 551-564. PMID 29470465 DOI: 10.1038/Nprot.2017.150  0.628
2018 Marchetti C, Zyner KG, Ohnmacht SA, Robson M, Haider SM, Morton JP, Marsico G, Vo T, Laughlin-Toth S, Ahmed AA, Di Vita G, Pazitna I, Gunaratnam M, Besser RJ, Andrade AC, ... ... Tannahill D, et al. Targeting multiple effector pathways in pancreatic ductal adenocarcinoma with a G-quadruplex-binding small molecule. Journal of Medicinal Chemistry. PMID 29356532 DOI: 10.1021/Acs.Jmedchem.7B01781  0.535
2016 Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, Di Antonio M, Pike J, Kimura H, Narita M, Tannahill D, Balasubramanian S. G-quadruplex structures mark human regulatory chromatin. Nature Genetics. PMID 27618450 DOI: 10.1038/Ng.3662  0.629
2016 Lensing SV, Marsico G, Hänsel-Hertsch R, Lam EY, Tannahill D, Balasubramanian S. DSBCapture: in situ capture and sequencing of DNA breaks. Nature Methods. PMID 27525976 DOI: 10.1038/Nmeth.3960  0.521
2016 Lensing S, Marsico G, Hänsel-Hertsch R, Lam E, Tannahill D, Balasubramanian S. DSBCapture: in situ single-nucleotide resolution DNA double-strand break mapping Protocol Exchange. DOI: 10.1038/Protex.2016.52  0.482
2015 Sanders DA, Gormally MV, Marsico G, Beraldi D, Tannahill D, Balasubramanian S. FOXM1 binds directly to non-consensus sequences in the human genome. Genome Biology. 16: 130. PMID 26100407 DOI: 10.1186/S13059-015-0696-Z  0.534
2015 Kendrick SL, Tannahill D, Balasubramanian S, Rimsza LM. Concurrent BCL2 / MYC Gene Amplification Associates with Increased DNA G-Quadruplex Formation in DLBCL Blood. 126: 2641-2641. DOI: 10.1182/Blood.V126.23.2641.2641  0.592
2014 Biffi G, Tannahill D, Miller J, Howat WJ, Balasubramanian S. Elevated levels of G-quadruplex formation in human stomach and liver cancer tissues. Plos One. 9: e102711. PMID 25033211 DOI: 10.1371/Journal.Pone.0102711  0.599
2014 Biffi G, Di Antonio M, Tannahill D, Balasubramanian S. Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells. Nature Chemistry. 6: 75-80. PMID 24345950 DOI: 10.1038/Nchem.1805  0.609
2013 McLuckie KI, Di Antonio M, Zecchini H, Xian J, Caldas C, Krippendorff BF, Tannahill D, Lowe C, Balasubramanian S. G-quadruplex DNA as a molecular target for induced synthetic lethality in cancer cells. Journal of the American Chemical Society. 135: 9640-3. PMID 23782415 DOI: 10.1021/Ja404868T  0.577
2013 Lam EY, Beraldi D, Tannahill D, Balasubramanian S. G-quadruplex structures are stable and detectable in human genomic DNA. Nature Communications. 4: 1796. PMID 23653208 DOI: 10.1038/Ncomms2792  0.635
2013 Biffi G, Tannahill D, McCafferty J, Balasubramanian S. Quantitative visualization of DNA G-quadruplex structures in human cells. Nature Chemistry. 5: 182-6. PMID 23422559 DOI: 10.1038/Nchem.1548  0.622
2012 Biffi G, Tannahill D, Balasubramanian S. An intramolecular G-quadruplex structure is required for binding of telomeric repeat-containing RNA to the telomeric protein TRF2. Journal of the American Chemical Society. 134: 11974-6. PMID 22780456 DOI: 10.1021/Ja305734X  0.596
2007 Pimanda JE, Ottersbach K, Knezevic K, Kinston S, Chan WY, Wilson NK, Landry JR, Wood AD, Kolb-Kokocinski A, Green AR, Tannahill D, Lacaud G, Kouskoff V, Göttgens B. Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development. Proceedings of the National Academy of Sciences of the United States of America. 104: 17692-7. PMID 17962413 DOI: 10.1073/Pnas.0707045104  0.32
2007 Pimanda JE, Donaldson IJ, de Bruijn MF, Kinston S, Knezevic K, Huckle L, Piltz S, Landry JR, Green AR, Tannahill D, Göttgens B. The SCL transcriptional network and BMP signaling pathway interact to regulate RUNX1 activity. Proceedings of the National Academy of Sciences of the United States of America. 104: 840-5. PMID 17213321 DOI: 10.1073/Pnas.0607196104  0.313
2006 Pimanda JE, Donaldson IJ, Bruijn MF, Kinston SJ, Knezevic K, Huckle L, Piltz S, Landry J, Green AR, Tannahill D, Gottgens B. Genome-Wide Computational Screen for Blood Stem Cell Enhancers Integrates RUNX1 and the BMP Signaling Pathway into the SCL Transcriptional Network. Blood. 108: 4196-4196. DOI: 10.1182/Blood.V108.11.4196.4196  0.32
2005 Adams DJ, van der Weyden L, Gergely FV, Arends MJ, Ng BL, Tannahill D, Kanaar R, Markus A, Morris BJ, Bradley A. BRCTx is a novel, highly conserved RAD18-interacting protein. Molecular and Cellular Biology. 25: 779-88. PMID 15632077 DOI: 10.1128/Mcb.25.2.779-788.2005  0.371
1989 Tannahill D, Melton DA. Localized synthesis of the Vg1 protein during early Xenopus development. Development (Cambridge, England). 106: 775-85. PMID 2562668  0.426
1984 Preston CM, Tannahill D. Effects of orientation and position on the activity of a herpes simplex virus immediate early gene far-upstream region. Virology. 137: 439-44. PMID 6091340 DOI: 10.1016/0042-6822(84)90238-1  0.312
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