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Ron C. Anafi - Publications

Affiliations: 
2011-2015 Medicine University of Pennsylvania Perelman School of Medicine 
Website:
https://www.med.upenn.edu/apps/faculty/index.php/g275/p8198976
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Li SY, Hammarlund JA, Wu G, Lian JW, Howell SJ, Clarke RB, Adamson AD, Gonçalves CF, Hogenesch JB, Anafi RC, Meng QJ. Tumor circadian clock strength influences metastatic potential and predicts patient prognosis in luminal A breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 121: e2311854121. PMID 38319971 DOI: 10.1073/pnas.2311854121  0.58
2023 Hammarlund JA, Li SY, Wu G, Lian JW, Howell SJ, Clarke R, Adamson A, Gonçalves CF, Hogenesch JB, Meng QJ, Anafi RC. Subtype-specific circadian clock dysregulation modulates breast cancer biology, invasiveness, and prognosis. Biorxiv : the Preprint Server For Biology. PMID 37293090 DOI: 10.1101/2023.05.17.540386  0.589
2022 Lee YY, Endale M, Wu G, Ruben MD, Francey LJ, Morris AR, Choo NY, Anafi RC, Smith DF, Liu AC, Hogenesch JB. Integration of genome-scale data identifies candidate sleep regulators. Sleep. PMID 36462188 DOI: 10.1093/sleep/zsac279  0.739
2022 Wu G, Ruben MD, Francey LJ, Lee YY, Anafi RC, Hogenesch JB. An in silico genome-wide screen for circadian clock strength in human samples. Bioinformatics (Oxford, England). PMID 36321857 DOI: 10.1093/bioinformatics/btac686  0.785
2020 Cal-Kayitmazbatir S, Kulkoyluoglu-Cotul E, Growe J, Selby CP, Rhoades SD, Malik D, Oner H, Asimgil H, Francey LJ, Sancar A, Kruger WD, Hogenesch JB, Weljie A, Anafi RC, Kavakli IH. CRY1-CBS binding regulates circadian clock function and metabolism. The Febs Journal. PMID 32383312 DOI: 10.1111/Febs.15360  0.777
2020 Haspel JA, Anafi R, Brown MK, Cermakian N, Depner C, Desplats P, Gelman AE, Haack M, Jelic S, Kim BS, Laposky AD, Lee YC, Mongodin E, Prather AA, Prendergast B, et al. Perfect timing: circadian rhythms, sleep, and immunity - an NIH workshop summary. Jci Insight. 5. PMID 31941836 DOI: 10.1172/Jci.Insight.131487  0.312
2020 Hammarlund J, Anafi R. 0062 Improved Circadian Data Ordering in the Presence of Biological and Technical Confounds Sleep. 43. DOI: 10.1093/Sleep/Zsaa056.060  0.335
2019 Foteinou PT, Venkataraman A, Francey LJ, Anafi RC, Hogenesch JB, Doyle FJ. Reply to Furlan et al.: The role of SIRT1 in cell autonomous clock function. Proceedings of the National Academy of Sciences of the United States of America. PMID 31239349 DOI: 10.1073/Pnas.1907923116  0.726
2018 Wu G, Ruben MD, Schmidt RE, Francey LJ, Smith DF, Anafi RC, Hughey JJ, Tasseff R, Sherrill JD, Oblong JE, Mills KJ, Hogenesch JB. Population-level rhythms in human skin with implications for circadian medicine. Proceedings of the National Academy of Sciences of the United States of America. PMID 30377266 DOI: 10.1073/Pnas.1809442115  0.773
2018 Foteinou PT, Venkataraman A, Francey LJ, Anafi RC, Hogenesch JB, Doyle FJ. Computational and experimental insights into the circadian effects of SIRT1. Proceedings of the National Academy of Sciences of the United States of America. PMID 30348778 DOI: 10.1073/Pnas.1803410115  0.77
2018 Ruben MD, Wu G, Smith DF, Schmidt RE, Francey LJ, Lee YY, Anafi RC, Hogenesch JB. A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine. Science Translational Medicine. 10. PMID 30209245 DOI: 10.1126/Scitranslmed.Aat8806  0.78
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.732
2017 Krishnaiah SY, Wu G, Altman BJ, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, ... ... Anafi RC, et al. Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. Cell Metabolism. 25: 1206. PMID 28467936 DOI: 10.1016/J.Cmet.2017.04.023  0.737
2017 Anafi RC, Francey LJ, Hogenesch JB, Kim J. CYCLOPS reveals human transcriptional rhythms in health and disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 28439010 DOI: 10.1073/Pnas.1619320114  0.767
2017 Krishnaiah SY, Wu G, Altman BJ, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, ... ... Anafi RC, et al. Clock Regulation of Metabolites Reveals Coupling between Transcription and Metabolism. Cell Metabolism. 25: 961-974.e4. PMID 28380384 DOI: 10.1016/J.Cmet.2017.03.019  0.741
2016 Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB. MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics (Oxford, England). PMID 27378304 DOI: 10.1093/Bioinformatics/Btw405  0.631
2016 Zhang R, Podtelezhnikov AA, Hogenesch JB, Anafi RC. Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA). Journal of Biological Rhythms. 31: 244-57. PMID 26955841 DOI: 10.1177/0748730416631895  0.748
2014 Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch JB. Machine learning helps identify CHRONO as a circadian clock component. Plos Biology. 12: e1001840. PMID 24737000 DOI: 10.1371/Journal.Pbio.1001840  0.731
2013 Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J. Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England). 29: 3174-80. PMID 24058056 DOI: 10.1093/Bioinformatics/Btt541  0.583
2003 Anafi RC, Beck KC, Wilson TA. Impedance, gas mixing, and bimodal ventilation in constricted lungs. Journal of Applied Physiology (Bethesda, Md. : 1985). 94: 1003-11. PMID 12571131 DOI: 10.1152/japplphysiol.00569.2002  0.71
2002 Anafi RC, Wilson TA. Empirical model for dynamic force-length behavior of airway smooth muscle. Journal of Applied Physiology (Bethesda, Md. : 1985). 92: 455-60. PMID 11796651 DOI: 10.1152/japplphysiol.00643.2001  0.693
2001 Anafi RC, Wilson TA. Airway stability and heterogeneity in the constricted lung. Journal of Applied Physiology (Bethesda, Md. : 1985). 91: 1185-92. PMID 11509514  0.691
2001 Wilson TA, Anafi RC, Hubmayr RD. Mechanics of edematous lungs. Journal of Applied Physiology (Bethesda, Md. : 1985). 90: 2088-93. PMID 11356770 DOI: 10.1152/Jappl.2001.90.6.2088  0.693
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