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Jouko J. Virtanen, Ph.D. - Publications

Affiliations: 
2012 Chemistry University of Chicago, Chicago, IL 
Area:
statistical mechanics of polymers in the liquid phase, protein dynamics aggregation, and folding, equilibrium aggregation phenomena, and molecular electronic structure
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Virtanen JJ, Zhang Y. MR-REX: molecular replacement by cooperative conformational search and occupancy optimization on low-accuracy protein models. Acta Crystallographica. Section D, Structural Biology. 74: 606-620. PMID 29968671 DOI: 10.1107/S2059798318005612  0.422
2017 Wang Y, Virtanen J, Xue Z, Zhang Y. I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation. Nucleic Acids Research. PMID 28472524 DOI: 10.1093/Nar/Gkx349  0.371
2016 Virtanen JJ, Sosnick TR, Freed KF. Erratum: "Ionic strength independence of charge distributions in solvation of biomolecules" [J. Chem. Phys. 141, 22D503 (2014)]. The Journal of Chemical Physics. 145: 059903. PMID 27497583 DOI: 10.1063/1.4959170  0.374
2016 Wang Y, Virtanen J, Xue Z, Tesmer JJ, Zhang Y. Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteins. Acta Crystallographica. Section D, Structural Biology. 72: 616-628. PMID 27139625 DOI: 10.1107/S2059798316003016  0.412
2015 Zhang W, Yang J, He B, Walker SE, Zhang H, Govindarajoo B, Virtanen J, Xue Z, Shen HB, Zhang Y. Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11. Proteins. PMID 26370505 DOI: 10.1002/Prot.24930  0.414
2015 Yang J, Zhang W, He B, Walker SE, Zhang H, Govindarajoo B, Virtanen J, Xue Z, Shen HB, Zhang Y. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade. Proteins. PMID 26343917 DOI: 10.1002/Prot.24918  0.425
2014 Virtanen JJ, Sosnick TR, Freed KF. Ionic strength independence of charge distributions in solvation of biomolecules. The Journal of Chemical Physics. 141: 22D503. PMID 25494774 DOI: 10.1063/1.4895522  0.436
2011 Virtanen JJ, Makowski L, Sosnick TR, Freed KF. Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering. Biophysical Journal. 101: 2061-9. PMID 22004761 DOI: 10.1016/J.Bpj.2011.09.021  0.473
2010 Virtanen JJ, Makowski L, Sosnick TR, Freed KF. Modeling the hydration layer around proteins: HyPred. Biophysical Journal. 99: 1611-9. PMID 20816074 DOI: 10.1016/J.Bpj.2010.06.027  0.49
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