Ali Saglam - Publications

Affiliations: 
2012- Chemistry University of Pittsburgh, Pittsburgh, PA, United States 

9/20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Husar A, Ordyan M, Garcia GC, Yancey JG, Saglam AS, Faeder JR, Bartol TM, Kennedy MB, Sejnowski TJ. MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface. Plos Computational Biology. 20: e1011800. PMID 38656994 DOI: 10.1371/journal.pcbi.1011800  0.345
2023 Bogetti AT, Leung JMG, Russo JD, Zhang S, Thompson JP, Saglam AS, Ray D, Mostofian B, Pratt AJ, Abraham RC, Harrison PO, Dudek M, Torrillo PA, DeGrave AJ, Adhikari U, et al. A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]. Living Journal of Computational Molecular Science. 5. PMID 37200895 DOI: 10.33011/livecoms.5.1.1655  0.723
2022 Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, ... ... Saglam AS, et al. BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Research. PMID 35524558 DOI: 10.1093/nar/gkac331  0.364
2019 Bogetti AT, Mostofian B, Dickson A, Pratt AJ, Saglam AS, Harrison PO, Adelman JL, Dudek M, Torrillo PA, DeGrave AJ, Adhikari U, Zwier MC, Zuckerman DM, Chong LT. A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]. Living Journal of Computational Molecular Science. 1. PMID 32395705 DOI: 10.33011/livecoms.1.2.10607  0.552
2019 Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR. MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework. Methods in Molecular Biology (Clifton, N.J.). 1945: 203-229. PMID 30945248 DOI: 10.1007/978-1-4939-9102-0_9  0.329
2019 Saglam AS, Chong LT. Protein-protein binding pathways and calculations of rate constants using fully-continuous, explicit-solvent simulations. Chemical Science. 10: 2360-2372. PMID 30881664 DOI: 10.1039/C8Sc04811H  0.733
2017 Saglam AS, Wang D, Zwier MC, Chong LT. Flexibility vs. Preorganization: Direct Comparison of Binding Kinetics for a Disordered Peptide and Its Exact Preorganized Analogues. The Journal of Physical Chemistry. B. PMID 28992700 DOI: 10.1021/Acs.Jpcb.7B08486  0.672
2016 Chong LT, Saglam AS, Zuckerman DM. Path-sampling strategies for simulating rare events in biomolecular systems. Current Opinion in Structural Biology. 43: 88-94. PMID 27984811 DOI: 10.1016/J.Sbi.2016.11.019  0.743
2015 Saglam AS, Chong LT. Highly Efficient Computation of the Basal kon using Direct Simulation of Protein-Protein Association with Flexible Molecular Models. The Journal of Physical Chemistry. B. PMID 26673903 DOI: 10.1021/Acs.Jpcb.5B10747  0.74
Low-probability matches (unlikely to be authored by this person)
2021 Schmucker R, Farina G, Faeder J, Fröhlich F, Saglam AS, Sandholm T. Combination treatment optimization using a pan-cancer pathway model. Plos Computational Biology. 17: e1009689. PMID 34962919 DOI: 10.1371/journal.pcbi.1009689  0.124
2024 Yildirim M, Gul SC, Angın YS, Saglam AI, Ozsoy U, Koca B, Ozkan N. Lymphocyte-to-C-reactive protein ratio as a new biomarker for predicting mortality and morbidity in Fournier's gangrene. Cirugia Y Cirujanos. 92: 181-188. PMID 38782374 DOI: 10.24875/CIRU.22000529  0.12
2024 Yildirim M, Koca B, Tufekci MF, Saglam AI, Ozkan N. Handmade Loop Versus Hem-o-Lok Clip in Closure of Appendiceal Stump During Laparoscopic Appendectomy: Limited Setting in a Peripheral University Hospital. Journal of Laparoendoscopic & Advanced Surgical Techniques. Part A. PMID 38770657 DOI: 10.1089/lap.2024.0132  0.12
2005 Baykul T, Saglam AA, Aydin U, Başak K. Incidence of cystic changes in radiographically normal impacted lower third molar follicles. Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics. 99: 542-5. PMID 15829874 DOI: 10.1016/j.tripleo.2004.08.010  0.066
2004 Saglam AA, Sanli G. Condylar asymmetry measurements in patients with temporomandibular disorders. The Journal of Contemporary Dental Practice. 5: 59-65. PMID 15318257  0.061
2020 Bulbuloglu E, Dagmura H, Daldal E, Deresoy A, Bakir H, Ozsoy U, Saglam AI, Demir O. Can Simple Tests Prior to Endoscopy Predict the OLGA Stage of Gastritis? Healthcare (Basel, Switzerland). 8. PMID 32722268 DOI: 10.3390/healthcare8030230  0.051
2004 Sağlam AM, Ozbaran HM, Sağlam AA. A comparison of mesio-distal crown dimensions of the permanent teeth in subjects with and without fluorosis. European Journal of Orthodontics. 26: 279-81. PMID 15222712  0.048
2003 Sağlam AA, Tüzüm MS. Clinical and radiologic investigation of the incidence, complications, and suitable removal times for fully impacted teeth in the Turkish population. Quintessence International (Berlin, Germany : 1985). 34: 53-9. PMID 12674360  0.024
2021 Yildirim M, Saglam AI, Ugurlu C, Angin YS, Dasiran F, Okan I. Performance of Residents During Laparoscopic Cholecystectomy: Is Self-assessment Reliable? Surgical Laparoscopy, Endoscopy & Percutaneous Techniques. PMID 34156187 DOI: 10.1097/SLE.0000000000000959  0.01
2003 Sağlam AA. Effects of tube drain with primary closure technique on postoperative trismus and swelling after removal of fully impacted mandibular third molars. Quintessence International (Berlin, Germany : 1985). 34: 143-7. PMID 12666865  0.01
2002 Sağlam AA. The vertical heights of maxillary and mandibular bones in panoramic radiographs of dentate and edentulous subjects. Quintessence International (Berlin, Germany : 1985). 33: 433-8. PMID 12073724  0.01
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