University of California, San Diego

Name Area Department Start Year Stop Year Advisor
Jeff SaucermanCardiac signaing, Computational biology2005 Andrew D. McCulloch (grad student)
Jeffrey Holmes1995 Andrew D. McCulloch (grad student)
John Craig Ventergenomics1975 Nathan O. Kaplan (grad student)
Kate Denning GaudryComputational Neuroscience, Vision; Intellectual property, patent law20032006 Pamela Reinagel (grad student)
William Stafford Noblemodeling biological processes at the molecular level1998 Charles Elkan (grad student)
Eizaburo DoiComputation & Theory20012003 Terrence J. Sejnowski (grad student)
Jochen TrieschNeural Computation Dana H. Ballard (post-doc)
Jake OlsonComputational Neuroscience Angela J. Yu (grad student)
Andreas Beyercomputational biology20062007 Trey Ideker (post-doc)
Chris Workman Trey Ideker (post-doc)
Kai Tan Trey Ideker (post-doc)
Diego U. Ferreiroprotein function, physiology, folding/binding20042008 Peter G. Wolynes (post-doc)
Song Yang2007 Philip E. Bourne (grad student)
Jason A. PapinComputational Systems Biology2004 Bernhard O. Palsson (grad student)
Kaihsu TaiBiochemistry, General Biophysics, Neuroscience Biology2002 J. Andrew McCammon (grad student)
Sharon Jane Wiback2003 Bernhard O. Palsson (grad student)
Eric C. GreenwaldCell Signaling, Computational Modeling, Cardiac Myocites2015 Jin Zhang (post-doc)
Jin ZhangFRET, cell signaling Roger Y. Tsien (post-doc)
Jennifer M. BuiGeneral Chemistry, Molecular Biology, General Biophysics2005 J. Andrew McCammon (grad student)
Markus Willard Covert2003 Bernhard O. Palsson (grad student)
Jonathan Monk2015 Bernhard O. Palsson (grad student)
Markus Juhana Herrgard2004 Bernhard O. Palsson (grad student)
Iman Famili2004 Bernhard O. Palsson (grad student)
Ali Ebrahim2016 Bernhard O. Palsson (grad student)
Stephen Sailoong Fong2004 Bernhard O. Palsson (grad student)
Timothy Eric Allen2005 Bernhard O. Palsson (grad student)
Kevin D. Costacardiac biomechanics, tissue engineering, atomic force microscopy Andrew D. McCulloch (grad student)
Jennifer Leanne Reed2005 Bernhard O. Palsson (grad student)
Pamela Reinagelvisual system, computation & theory
Nathan Daniel Price2005 Bernhard O. Palsson (grad student)
Michael Prentissprotein folding, regulatory networks, glasses, many-body phenomena2004 Peter G. Wolynes (grad student)
Tim R. MullenComputational Neuroscience
Sara M. WeisBiomedical Engineering2000 Andrew D. McCulloch (grad student)
Thuy D. Vo2006 Bernhard O. Palsson (grad student)
Samuel S. Choprotein folding, regulatory networks, glasses, many-body phenomena2007 Peter G. Wolynes (grad student)
Vivian HookNeurotransmitters, Proteomics
Derrick SungBiomedical Engineering2001 Andrew D. McCulloch (grad student)
Chenghang Zongprotein folding, regulatory networks, glasses, many-body phenomena2007 Peter G. Wolynes (grad student)
Jeffrey J. SaucermanBiomedical Engineering, Cell Biology2005 Andrew D. McCulloch (grad student)
Gregory J. Hamerly2003 Charles Elkan (grad student)
Anne Richelle20152018 Nathan Enoch Lewis (post-doc)
Natalie Christine Hurlen2006 Bernhard O. Palsson (grad student)
Robert W. MillsBiomedical Engineering, Medical Biophysics2006 Andrew D. McCulloch (grad student)
Bianca Zadrozny2003 Charles Elkan (grad student)
Sarah N. FlaimBiomedical Engineering2006 Andrew D. McCulloch (grad student)
David Kauchak2006 Charles Elkan (grad student)
Eric D. Scheeff2003 Philip E. Bourne (grad student)
J. Andrew McCammonStatistical mechanics and computational chemistry, with applications to biological systems
Peter N. CostandiBiomedical Engineering, Medical Biophysics2006 Andrew D. McCulloch (grad student)
Jenny Gu2006 Philip E. Bourne (grad student)
Piotr Z. Kozbialbioinformatics
Amy L. HsiehBiomedical Engineering Bioengineering2010 Andrew D. McCulloch (grad student)
Jeffrey David Orth Bioengineering2012 Bernhard O. Palsson (grad student)
Christophe Schilling2000 Bernhard O. Palsson (grad student)
Karen A. WeiBiomedical Engineering, Cell Biology Bioengineering2011 Andrew D. McCulloch (grad student)
Nathan Enoch Lewis Bioengineering2012 Bernhard O. Palsson (grad student)
Ryan LaCroix Bioengineering2016 Bernhard O. Palsson (grad student)
Aarash Bordbar Bioengineering2014 Bernhard O. Palsson (grad student)
Paul D. Kuocomputational biology Bioengineering2011 Trey Ideker (grad student)
Donghyuk Kim Bioengineering2014 Bernhard O. Palsson (grad student)
Gregory J. Hannumcomputational biology Bioengineering2012 Trey Ideker (grad student)
Ramprasad Ramakrishna
Rohith K. Srivascomputational biology Bioengineering2012 Trey Ideker (grad student)
Daniel Zielinski Bioengineering2015 Bernhard O. Palsson (grad student)
Adam Michael Feist Bioengineering2008 Bernhard O. Palsson (grad student)
Nikolaus Sonnenscheincomputational biology Bioengineering20112013 Bernhard O. Palsson (post-doc)
Mallory Embree Bioengineering2014 Bernhard O. Palsson (grad student)
Monica L. Mo Bioengineering2009 Bernhard O. Palsson (grad student)
Hooman Hefzi20132018 Nathan Enoch Lewis (grad student)
Jahir Mauricio Gutierrez Bioengineering20142018 Nathan Enoch Lewis (grad student)
Karl Francis Bioengineering1999 Bernhard O. Palsson (grad student)
Shangzhong Li Bioengineering20142019 Nathan Enoch Lewis (grad student)
Stephen Federowicz Bioengineering2014 Bernhard O. Palsson (grad student)
Haythem Latif Bioengineering2014 Bernhard O. Palsson (grad student)
Neema Jamshidi Bioengineering2009 Bernhard O. Palsson (grad student)
Jeremy S. Edwards Bioengineering1999 Bernhard O. Palsson (grad student)
Andrew D. McCullochcomputational Biology, cardiac
Bernhard O. Palsson
Vasiliy A. Portnoy Bioengineering2010 Bernhard O. Palsson (grad student)
Sang Woo Seo Bioengineering20132015 Bernhard O. Palsson (post-doc)
Scott Anthony Becker Bioengineering2007 Bernhard O. Palsson (grad student)
Adam T. WrightBiomedical Engineering Bioengineering2010 Andrew D. McCulloch (grad student)
Roger Larken Chang Bioinformatics2012 Bernhard O. Palsson (grad student)
Kristine M. Briedis Bioinformatics2008 Philip E. Bourne (grad student)
Silpa Suthramcomputational biology Bioinformatics2008 Trey Ideker (grad student)
Ryan M. Kelleycomputational biology Bioinformatics2009 Trey Ideker (grad student)
Harish Nagarajan Bioinformatics2012 Bernhard O. Palsson (grad student)
Edward J. O'Brien Bioinformatics2015 Bernhard O. Palsson (grad student)
Sourav Bandyopadhyaycomputational biology Bioinformatics2010 Trey Ideker (grad student)
Han-Yu Chuangcomputational biology Bioinformatics2010 Trey Ideker (grad student)
Joshua Adam Lerman Bioinformatics2014 Bernhard O. Palsson (grad student)
Ines ThieleSystems Biomedicine Bioinformatics2009 Bernhard O. Palsson (grad student)
Jan Schellenberger Bioinformatics2010 Bernhard O. Palsson (grad student)
Andrew Robert Joyce Bioinformatics2007 Bernhard O. Palsson (grad student)
Alex Thomas Bioinformatics and Systems Biology20112015 Nathan Enoch Lewis (grad student)
Joanne Liu Bioinformatics and Systems Biology20142017 Nathan Enoch Lewis (grad student)
Philip Steven LowComputational Neuroscience, Sleep Biol/Specializ Comput Neurobio2007 Charles F. Stevens (grad student)
Huajiang C. Makcomputational biology Biology2008 Trey Ideker (grad student)
Gene W. YeoRNA processing, neurodevelopment, neurodegeneration, computational biology
Arneh BabakhaniPhysical Chemistry, Pharmaceutical Chemistry, Biochemistry Chem w/Spec Bioinformatics2009 J. Andrew McCammon (grad student)
Patrick Weinkamprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2009 Peter G. Wolynes (grad student)
Daniel Schultzprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2009 Peter G. Wolynes (grad student)
Yuhui ChengPhysical Chemistry Chemistry2007 J. Andrew McCammon (grad student)
Patricia M. BaulerGeneral Chemistry, Biochemistry Chemistry2012 J. Andrew McCammon (grad student)
Mehrnoosh ArrarBiochemistry, Biomechanics Biophysics Chemistry2014 J. Andrew McCammon (grad student)
Patrick G. BlachlyMolecular Chemistry, Biochemistry Chemistry2014 J. Andrew McCammon (grad student)
Joachim Latzerprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2007 Peter G. Wolynes (grad student)
Margaret Kenyon Applebee Chemistry2010 Bernhard O. Palsson (grad student)
Thomas Conrad Chemistry Chemistry2010 Bernhard O. Palsson (grad student), Alexander Hoffmann (grad student)
Christopher KananComputer Vision, Machine Learning, Object recognition, Neuromorphic algorithms, Theoretical neuroscience Computer Science and Engineering20072013 Garrison Cottrell (grad student)
Tze W. Ie Computer Science and Engineering2007 Yoav Freund (grad student)
Evan I. Ettinger Computer Science and Engineering2010 Yoav Freund (grad student)
Charles Elkan
William M. Beaver Computer Science and Engineering2011 Yoav Freund (grad student)
Sunsern Cheamanunkul Computer Science and Engineering2014 Yoav Freund (grad student)
Aditya K. Menon Computer Science and Engineering2013 Charles Elkan (grad student)
Yoav Freund
Trey Idekercomputational biology
Mayank Kabra Electrical Engineering (Computer Engineering)2011 Yoav Freund (grad student)
Philip M. MeierComputational Neuroscience, Vision Neurosciences20052011 Pamela Reinagel (grad student)
Jacob D. Stevensonprotein folding, regulatory networks, glasses, many-body phenomena Physics2009 Peter G. Wolynes (grad student)
Anat Burgerprotein folding, regulatory networks, glasses, many-body phenomena Physics2012 Peter G. Wolynes (grad student)
Ting Luprotein folding, regulatory networks, glasses, many-body phenomena Physics (Biophysics)2007 Peter G. Wolynes (grad student)
Werner G. KrebsData Science San Diego Supercomputer Center20022004 Philip E. Bourne (post-doc)
Philip E. Bourne
Ruben Abagyan
Zhong-Ru (Paul) XieStructural Bioinformatics, Computational Drug Discovery Skaggs School of Pharmacy and Pharmaceutical Sciences20122013 Ruben Abagyan (post-doc)