University of California, San Diego

Name Area Department Start Year Stop Year Advisor
Jacob D. Stevensonprotein folding, regulatory networks, glasses, many-body phenomena Physics2009 Peter G. Wolynes (grad student)
Yuhui ChengPhysical Chemistry Chemistry2007 J. Andrew McCammon (grad student)
Roger Larken Chang Bioinformatics2012 Bernhard O. Palsson (grad student)
Markus Willard Covert2003 Bernhard O. Palsson (grad student)
Haythem Latif Bioengineering2014 Bernhard O. Palsson (grad student)
Scott Anthony Becker Bioengineering2007 Bernhard O. Palsson (grad student)
Kai Tan Trey Ideker (post-doc)
Adam T. WrightBiomedical Engineering Bioengineering2010 Andrew D. McCulloch (grad student)
Tim R. MullenComputational Neuroscience
Paul D. Kuocomputational biology Bioengineering2011 Trey Ideker (grad student)
Anat Burgerprotein folding, regulatory networks, glasses, many-body phenomena Physics2012 Peter G. Wolynes (grad student)
Arneh BabakhaniPhysical Chemistry, Pharmaceutical Chemistry, Biochemistry Chem w/Spec Bioinformatics2009 J. Andrew McCammon (grad student)
Jeffrey David Orth Bioengineering2012 Bernhard O. Palsson (grad student)
Markus Juhana Herrgard2004 Bernhard O. Palsson (grad student)
Jeremy S. Edwards Bioengineering1999 Bernhard O. Palsson (grad student)
Adam Michael Feist Bioengineering2008 Bernhard O. Palsson (grad student)
Amy L. HsiehBiomedical Engineering Bioengineering2010 Andrew D. McCulloch (grad student)
Vivian HookNeurotransmitters, Proteomics
Kevin D. Costacardiac biomechanics, tissue engineering, atomic force microscopy Andrew D. McCulloch (grad student)
Gregory J. Hannumcomputational biology Bioengineering2012 Trey Ideker (grad student)
Gregory J. Hamerly2003 Charles Elkan (grad student)
Tze W. Ie Computer Science and Engineering2007 Yoav Freund (grad student)
Patricia M. BaulerGeneral Chemistry, Biochemistry Chemistry2012 J. Andrew McCammon (grad student)
Nathan Enoch Lewis Bioengineering2012 Bernhard O. Palsson (grad student)
Iman Famili2004 Bernhard O. Palsson (grad student)
Monica L. Mo Bioengineering2009 Bernhard O. Palsson (grad student)
Jeff SaucermanCardiac signaing, Computational biology2005 Andrew D. McCulloch (grad student)
Karen A. WeiBiomedical Engineering, Cell Biology Bioengineering2011 Andrew D. McCulloch (grad student)
Trey Idekercomputational biology
Rohith K. Srivascomputational biology Bioengineering2012 Trey Ideker (grad student)
Bianca Zadrozny2003 Charles Elkan (grad student)
Evan I. Ettinger Computer Science and Engineering2010 Yoav Freund (grad student)
Mehrnoosh ArrarBiochemistry, Biomechanics Biophysics Chemistry2014 J. Andrew McCammon (grad student)
Harish Nagarajan Bioinformatics2012 Bernhard O. Palsson (grad student)
Stephen Sailoong Fong2004 Bernhard O. Palsson (grad student)
Philip Steven LowComputational Neuroscience, Sleep Biol/Specializ Comput Neurobio2007 Charles F. Stevens (grad student)
Ines ThieleSystems Biomedicine Bioinformatics2009 Bernhard O. Palsson (grad student)
Jeffrey Holmes1995 Andrew D. McCulloch (grad student)
Yoav Freund
Michael Prentissprotein folding, regulatory networks, glasses, many-body phenomena2004 Peter G. Wolynes (grad student)
David Kauchak2006 Charles Elkan (grad student)
William M. Beaver Computer Science and Engineering2011 Yoav Freund (grad student)
Patrick G. BlachlyMolecular Chemistry, Biochemistry Chemistry2014 J. Andrew McCammon (grad student)
Aarash Bordbar Bioengineering2014 Bernhard O. Palsson (grad student)
Timothy Eric Allen2005 Bernhard O. Palsson (grad student)
Neema Jamshidi Bioengineering2009 Bernhard O. Palsson (grad student)
Jason A. PapinComputational Systems Biology2004 Bernhard O. Palsson (grad student)
Andrew D. McCullochcomputational Biology, cardiac
Samuel S. Choprotein folding, regulatory networks, glasses, many-body phenomena2007 Peter G. Wolynes (grad student)
Eric D. Scheeff2003 Philip E. Bourne (grad student)
Mayank Kabra Electrical Engineering (Computer Engineering)2011 Yoav Freund (grad student)
Sara M. WeisBiomedical Engineering2000 Andrew D. McCulloch (grad student)
Joshua Adam Lerman Bioinformatics2014 Bernhard O. Palsson (grad student)
Jennifer Leanne Reed2005 Bernhard O. Palsson (grad student)
Jin ZhangFRET, cell signaling Roger Y. Tsien (post-doc)
Jonathan Monk2015 Bernhard O. Palsson (grad student)
J. Andrew McCammonStatistical mechanics and computational chemistry, with applications to biological systems
Chenghang Zongprotein folding, regulatory networks, glasses, many-body phenomena2007 Peter G. Wolynes (grad student)
Jenny Gu2006 Philip E. Bourne (grad student)
Derrick SungBiomedical Engineering2001 Andrew D. McCulloch (grad student)
Donghyuk Kim Bioengineering2014 Bernhard O. Palsson (grad student)
Nathan Daniel Price2005 Bernhard O. Palsson (grad student)
Ali Ebrahim2016 Bernhard O. Palsson (grad student)
Silpa Suthramcomputational biology Bioinformatics2008 Trey Ideker (grad student)
John Craig Ventergenomics1975 Nathan O. Kaplan (grad student)
Song Yang2007 Philip E. Bourne (grad student)
Jan Schellenberger Bioinformatics2010 Bernhard O. Palsson (grad student)
Piotr Z. Kozbialbioinformatics
Ting Luprotein folding, regulatory networks, glasses, many-body phenomena Physics (Biophysics)2007 Peter G. Wolynes (grad student)
Thuy D. Vo2006 Bernhard O. Palsson (grad student)
Jochen TrieschNeural Computation Dana H. Ballard (post-doc)
Jeffrey J. SaucermanBiomedical Engineering, Cell Biology2005 Andrew D. McCulloch (grad student)
Ramprasad Ramakrishna
Ryan LaCroix Bioengineering2016 Bernhard O. Palsson (grad student)
Huajiang C. Makcomputational biology Biology2008 Trey Ideker (grad student)
Kristine M. Briedis Bioinformatics2008 Philip E. Bourne (grad student)
Vasiliy A. Portnoy Bioengineering2010 Bernhard O. Palsson (grad student)
Gene W. YeoRNA processing, neurodevelopment, neurodegeneration, computational biology
Joachim Latzerprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2007 Peter G. Wolynes (grad student)
Stephen Federowicz Bioengineering2014 Bernhard O. Palsson (grad student)
Jake OlsonComputational Neuroscience Angela J. Yu (grad student)
Robert W. MillsBiomedical Engineering, Medical Biophysics2006 Andrew D. McCulloch (grad student)
Daniel Zielinski Bioengineering2015 Bernhard O. Palsson (grad student)
Edward J. O'Brien Bioinformatics2015 Bernhard O. Palsson (grad student)
Ryan M. Kelleycomputational biology Bioinformatics2009 Trey Ideker (grad student)
Kaihsu TaiBiochemistry, General Biophysics, Neuroscience Biology2002 J. Andrew McCammon (grad student)
Margaret Kenyon Applebee Chemistry2010 Bernhard O. Palsson (grad student)
Christophe Schilling2000 Bernhard O. Palsson (grad student)
Patrick Weinkamprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2009 Peter G. Wolynes (grad student)
Natalie Christine Hurlen2006 Bernhard O. Palsson (grad student)
Sarah N. FlaimBiomedical Engineering2006 Andrew D. McCulloch (grad student)
Mallory Embree Bioengineering2014 Bernhard O. Palsson (grad student)
William Stafford Noblemodeling biological processes at the molecular level1998 Charles Elkan (grad student)
Ruben Abagyan
Sourav Bandyopadhyaycomputational biology Bioinformatics2010 Trey Ideker (grad student)
Sunsern Cheamanunkul Computer Science and Engineering2014 Yoav Freund (grad student)
Daniel Schultzprotein folding, regulatory networks, glasses, many-body phenomena Chemistry2009 Peter G. Wolynes (grad student)
Jennifer M. BuiGeneral Chemistry, Molecular Biology, General Biophysics2005 J. Andrew McCammon (grad student)
Thomas Conrad Chemistry Chemistry2010 Bernhard O. Palsson (grad student), Alexander Hoffmann (grad student)
Sharon Jane Wiback2003 Bernhard O. Palsson (grad student)
Karl Francis Bioengineering1999 Bernhard O. Palsson (grad student)
Andrew Robert Joyce Bioinformatics2007 Bernhard O. Palsson (grad student)
Chris Workman Trey Ideker (post-doc)
Peter N. CostandiBiomedical Engineering, Medical Biophysics2006 Andrew D. McCulloch (grad student)
Pamela Reinagelvisual system, computation & theory
Han-Yu Chuangcomputational biology Bioinformatics2010 Trey Ideker (grad student)
Aditya K. Menon Computer Science and Engineering2013 Charles Elkan (grad student)
Charles Elkan
Bernhard O. Palsson
Philip E. Bourne
Eizaburo DoiComputation & Theory20012003 Terrence J. Sejnowski (grad student)
Werner G. KrebsData Science San Diego Supercomputer Center20022004 Philip E. Bourne (post-doc)
Kate Denning GaudryComputational Neuroscience, Vision; Intellectual property, patent law20032006 Pamela Reinagel (grad student)
Diego U. Ferreiroprotein function, physiology, folding/binding20042008 Peter G. Wolynes (post-doc)
Philip M. MeierComputational Neuroscience, Vision Neurosciences20052011 Pamela Reinagel (grad student)
Andreas Beyercomputational biology20062007 Trey Ideker (post-doc)
Christopher KananComputer Vision, Machine Learning, Object recognition, Neuromorphic algorithms, Theoretical neuroscience Computer Science and Engineering20072013 Garrison Cottrell (grad student)
Alex Thomas Bioinformatics and Systems Biology20112015 Nathan Enoch Lewis (grad student)
Nikolaus Sonnenscheincomputational biology Bioengineering20112013 Bernhard O. Palsson (post-doc)
Jahir Mauricio Gutierrez Bioengineering20142018 Nathan Enoch Lewis (grad student)
Shangzhong Li Bioengineering20142019 Nathan Enoch Lewis (grad student)
Zhong-Ru (Paul) XieStructural Bioinformatics, Computational Drug Discovery Skaggs School of Pharmacy and Pharmaceutical Sciences20122013 Ruben Abagyan (post-doc)
Sang Woo Seo Bioengineering20132015 Bernhard O. Palsson (post-doc)
Hooman Hefzi20132018 Nathan Enoch Lewis (grad student)
Joanne Liu Bioinformatics and Systems Biology20142017 Nathan Enoch Lewis (grad student)
Eric C. GreenwaldCell Signaling, Computational Modeling, Cardiac Myocites2015 Jin Zhang (post-doc)
Anne Richelle20152018 Nathan Enoch Lewis (post-doc)