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La Jolla, CA

University of California, San Diego

Name	Area	Department	Start Year	Stop Year	Advisor
Chris Workman					Trey Ideker (post-doc)
Kai Tan					Trey Ideker (post-doc)
Jeffrey Holmes				1995	Andrew D. McCulloch (grad student)
Charles Elkan
Yoav Freund
Christophe Schilling				2000	Bernhard O. Palsson (grad student)
Sharon Jane Wiback				2003	Bernhard O. Palsson (grad student)
Markus Willard Covert				2003	Bernhard O. Palsson (grad student)
Markus Juhana Herrgard				2004	Bernhard O. Palsson (grad student)
Iman Famili				2004	Bernhard O. Palsson (grad student)
Stephen Sailoong Fong				2004	Bernhard O. Palsson (grad student)
Timothy Eric Allen				2005	Bernhard O. Palsson (grad student)
Jennifer Leanne Reed				2005	Bernhard O. Palsson (grad student)
Nathan Daniel Price				2005	Bernhard O. Palsson (grad student)
Thuy D. Vo				2006	Bernhard O. Palsson (grad student)
Stephen Federowicz		Bioengineering		2014	Bernhard O. Palsson (grad student)
Natalie Christine Hurlen				2006	Bernhard O. Palsson (grad student)
Andrew Robert Joyce		Bioinformatics		2007	Bernhard O. Palsson (grad student)
Scott Anthony Becker		Bioengineering		2007	Bernhard O. Palsson (grad student)
Adam Michael Feist		Bioengineering		2008	Bernhard O. Palsson (grad student)
Monica L. Mo		Bioengineering		2009	Bernhard O. Palsson (grad student)
Neema Jamshidi		Bioengineering		2009	Bernhard O. Palsson (grad student)
Jan Schellenberger		Bioinformatics		2010	Bernhard O. Palsson (grad student)
Vasiliy A. Portnoy		Bioengineering		2010	Bernhard O. Palsson (grad student)
Margaret Kenyon Applebee		Chemistry		2010	Bernhard O. Palsson (grad student)
Thomas Conrad		Chemistry Chemistry		2010	Bernhard O. Palsson (grad student), Alexander Hoffmann (grad student)
Roger Larken Chang		Bioinformatics Skaggs School of Pharmacy and Pharmaceutical Sciences		2012	Bernhard O. Palsson (grad student), Philip E. Bourne (grad student)
Jeffrey David Orth		Bioengineering		2012	Bernhard O. Palsson (grad student)
Nathan Enoch Lewis		Bioengineering		2012	Bernhard O. Palsson (grad student)
Harish Nagarajan		Bioinformatics		2012	Bernhard O. Palsson (grad student)
Aarash Bordbar		Bioengineering		2014	Bernhard O. Palsson (grad student)
Joshua Adam Lerman		Bioinformatics		2014	Bernhard O. Palsson (grad student)
Donghyuk Kim		Bioengineering		2014	Bernhard O. Palsson (grad student)
Ramprasad Ramakrishna
Daniel Zielinski		Bioengineering		2015	Bernhard O. Palsson (grad student)
Mallory Embree		Bioengineering		2014	Bernhard O. Palsson (grad student)
Karl Francis		Bioengineering		1999	Bernhard O. Palsson (grad student)
Haythem Latif		Bioengineering		2014	Bernhard O. Palsson (grad student)
Jeremy S. Edwards		Bioengineering		1999	Bernhard O. Palsson (grad student)
Bernhard O. Palsson
Tze W. Ie		Computer Science and Engineering		2007	Yoav Freund (grad student)
Evan I. Ettinger		Computer Science and Engineering		2010	Yoav Freund (grad student)
William M. Beaver		Computer Science and Engineering		2011	Yoav Freund (grad student)
Mayank Kabra		Electrical Engineering (Computer Engineering)		2011	Yoav Freund (grad student)
Sunsern Cheamanunkul		Computer Science and Engineering		2014	Yoav Freund (grad student)
Aditya K. Menon		Computer Science and Engineering		2013	Charles Elkan (grad student)
Gregory J. Hamerly				2003	Charles Elkan (grad student)
Bianca Zadrozny				2003	Charles Elkan (grad student)
David Kauchak				2006	Charles Elkan (grad student)
Eric D. Scheeff				2003	Philip E. Bourne (grad student)
Jenny Gu				2006	Philip E. Bourne (grad student)
Song Yang				2007	Philip E. Bourne (grad student)
Kristine M. Briedis		Bioinformatics		2008	Philip E. Bourne (grad student)
Jonathan Monk				2015	Bernhard O. Palsson (grad student)
Ali Ebrahim				2016	Bernhard O. Palsson (grad student)
Ryan LaCroix		Bioengineering		2016	Bernhard O. Palsson (grad student)
Edward J. O'Brien		Bioinformatics		2015	Bernhard O. Palsson (grad student)
Ruben Abagyan
Alex Thomas		Bioinformatics and Systems Biology	2011	2015	Nathan Enoch Lewis (grad student)
Hooman Hefzi			2013	2018	Nathan Enoch Lewis (grad student)
Jahir Mauricio Gutierrez		Bioengineering	2014	2018	Nathan Enoch Lewis (grad student)
Shangzhong Li		Bioengineering	2014	2019	Nathan Enoch Lewis (grad student)
Anne Richelle			2015	2018	Nathan Enoch Lewis (post-doc)
Joanne Liu		Bioinformatics and Systems Biology	2014	2017	Nathan Enoch Lewis (grad student)
Sang Woo Seo		Bioengineering	2013	2015	Bernhard O. Palsson (post-doc)
Ilya Shindyalov			1992	2005	Philip E. Bourne (post-doc)
Stella Veretnik		Pharmacology	2002	2010	Philip E. Bourne (post-doc)
Philip E. Bourne
Douglas McCloskey		Bioengineering	2011	2016	Bernhard O. Palsson (grad student)
Elizabeth Brunk
James Yurkovich			2013	2018	Bernhard O. Palsson (grad student)
Nathan Mih			2013	2018	Bernhard O. Palsson (grad student)
Jared Broddrick			2013	2018	Bernhard O. Palsson (grad student)
Justin Tan				2019	Bernhard O. Palsson (grad student)
Colton Lloyd				2019	Bernhard O. Palsson (grad student)
Bin Du				2019	Bernhard O. Palsson (grad student)
David Heckmann				2019	Bernhard O. Palsson (post-doc)
Julia Kleinmanns				2019	Bernhard O. Palsson (post-doc)
Ye Gao				2020	Bernhard O. Palsson (grad student)
Yara Seif				2020	Bernhard O. Palsson (grad student)
Henrique Machado				2020	Bernhard O. Palsson (post-doc)
Sonal Choudhary				2020	Bernhard O. Palsson (post-doc)
Erol Kavvas				2020	Bernhard O. Palsson (grad student)
Xin Fang				2020	Bernhard O. Palsson (grad student)
Anand Sastry				2020	Bernhard O. Palsson (grad student)
Patrick Phaneuf				2021	Bernhard O. Palsson (grad student)
Charles Norsigian				2021	Bernhard O. Palsson (grad student)
Amitesh Anand				2021	Bernhard O. Palsson (post-doc)
Mehrnoosh Arrar	Biochemistry, Biomechanics Biophysics	Chemistry		2014	J. Andrew McCammon (grad student)
Kaihsu Tai	Biochemistry, General Biophysics, Neuroscience Biology			2002	J. Andrew McCammon (grad student)
Piotr Z. Kozbial	bioinformatics
Sara M. Weis	Biomedical Engineering			2000	Andrew D. McCulloch (grad student)
Derrick Sung	Biomedical Engineering			2001	Andrew D. McCulloch (grad student)
Sarah N. Flaim	Biomedical Engineering			2006	Andrew D. McCulloch (grad student)
Adam T. Wright	Biomedical Engineering	Bioengineering		2010	Andrew D. McCulloch (grad student)
Amy L. Hsieh	Biomedical Engineering	Bioengineering		2010	Andrew D. McCulloch (grad student)
Karen A. Wei	Biomedical Engineering, Cell Biology	Bioengineering		2011	Andrew D. McCulloch (grad student)
Robert W. Mills	Biomedical Engineering, Medical Biophysics			2006	Andrew D. McCulloch (grad student)
Peter N. Costandi	Biomedical Engineering, Medical Biophysics			2006	Andrew D. McCulloch (grad student)
Kevin D. Costa	cardiac biomechanics, tissue engineering, atomic force microscopy				Andrew D. McCulloch (grad student)
Jeffrey J. Saucerman	Cardiac signaing, Computational biology			2005	Andrew D. McCulloch (grad student)
Eric C. Greenwald	Cell Signaling, Computational Modeling, Cardiac Myocites		2015		Jin Zhang (post-doc)
Eizaburo Doi	Computation & Theory		2001	2003	Terrence J. Sejnowski (grad student)
Andreas Beyer	computational biology		2006	2007	Trey Ideker (post-doc)
Trey Ideker	computational biology
Silpa Suthram	computational biology	Bioinformatics		2008	Trey Ideker (grad student)
Huajiang C. Mak	computational biology	Biology		2008	Trey Ideker (grad student)
Ryan M. Kelley	computational biology	Bioinformatics		2009	Trey Ideker (grad student)
Sourav Bandyopadhyay	computational biology	Bioinformatics		2010	Trey Ideker (grad student)
Han-Yu Chuang	computational biology	Bioinformatics		2010	Trey Ideker (grad student)
Paul D. Kuo	computational biology	Bioengineering		2011	Trey Ideker (grad student)
Gregory J. Hannum	computational biology	Bioengineering		2012	Trey Ideker (grad student)
Rohith K. Srivas	computational biology	Bioengineering		2012	Trey Ideker (grad student)
Nikolaus Sonnenschein	computational biology	Bioengineering	2011	2013	Bernhard O. Palsson (post-doc)
Andrew D. McCulloch	computational Biology, cardiac
Lei Xie	computational biology; bioinformatics; machine learning; data science		2004	2011	Philip E. Bourne (research scientist)
Jake Olson	Computational Neuroscience				Angela J. Yu (grad student)
Tim R. Mullen	Computational Neuroscience
Philip Steven Low	Computational Neuroscience, Sleep	Biol/Specializ Comput Neurobio		2007	Charles F. Stevens (grad student)
Philip M. Meier	Computational Neuroscience, Vision	Neurosciences	2005	2011	Pamela Reinagel (grad student)
Kate S Gaudry	Computational Neuroscience, Vision; Intellectual property, patent law		2003	2006	Pamela Reinagel (grad student)
Jason A. Papin	Computational Systems Biology			2004	Bernhard O. Palsson (grad student)
Werner G. Krebs	Data Science	San Diego Supercomputer Center	2002	2004	Philip E. Bourne (post-doc)
Christopher Kanan	Deep Learning, Artificial Intelligence, Computer Vision, Cognitive Science	Computer Science and Engineering	2007	2013	Garrison Cottrell (grad student)
Jin Zhang	FRET, cell signaling				Roger Y. Tsien (post-doc)
Patricia M. Bauler	General Chemistry, Biochemistry	Chemistry		2012	J. Andrew McCammon (grad student)
Jennifer M. Bui	General Chemistry, Molecular Biology, General Biophysics			2005	J. Andrew McCammon (grad student)
John Craig Venter	genomics			1975	Nathan O. Kaplan (grad student)
Hyun Gyu Lim	Microbial systems biology	Bioengineering	2018	2023	Bernhard O. Palsson (post-doc)
William Stafford Noble	modeling biological processes at the molecular level			1998	Charles Elkan (grad student)
Patrick G. Blachly	Molecular Chemistry, Biochemistry	Chemistry		2014	J. Andrew McCammon (grad student)
Jochen Triesch	Neural Computation				Dana H. Ballard (post-doc)
Vivian Hook	Neurotransmitters, Proteomics
Yuhui Cheng	Physical Chemistry	Chemistry		2007	J. Andrew McCammon (grad student)
Arneh Babakhani	Physical Chemistry, Pharmaceutical Chemistry, Biochemistry	Chem w/Spec Bioinformatics		2009	J. Andrew McCammon (grad student)
Michael Prentiss	protein folding, regulatory networks, glasses, many-body phenomena			2004	Peter G. Wolynes (grad student)
Samuel S. Cho	protein folding, regulatory networks, glasses, many-body phenomena			2007	Peter G. Wolynes (grad student)
Chenghang Zong	protein folding, regulatory networks, glasses, many-body phenomena			2007	Peter G. Wolynes (grad student)
Ting Lu	protein folding, regulatory networks, glasses, many-body phenomena	Physics (Biophysics)		2007	Peter G. Wolynes (grad student)
Joachim Latzer	protein folding, regulatory networks, glasses, many-body phenomena	Chemistry		2007	Peter G. Wolynes (grad student)
Patrick Weinkam	protein folding, regulatory networks, glasses, many-body phenomena	Chemistry		2009	Peter G. Wolynes (grad student)
Daniel Schultz	protein folding, regulatory networks, glasses, many-body phenomena	Chemistry		2009	Peter G. Wolynes (grad student)
Jacob D. Stevenson	protein folding, regulatory networks, glasses, many-body phenomena	Physics		2009	Peter G. Wolynes (grad student)
Anat Burger	protein folding, regulatory networks, glasses, many-body phenomena	Physics		2012	Peter G. Wolynes (grad student)
Peter G. Wolynes	protein folding, regulatory networks, glasses, many-body phenomena
Diego U. Ferreiro	protein function, physiology, folding/binding		2004	2008	Peter G. Wolynes (post-doc)
Gene W. Yeo	RNA processing, neurodevelopment, neurodegeneration, computational biology
J. Andrew McCammon	Statistical mechanics and computational chemistry, with applications to biological systems
Zhong-Ru (Paul) Xie	Structural Bioinformatics, Computational Drug Discovery	Skaggs School of Pharmacy and Pharmaceutical Sciences	2012	2013	Ruben Abagyan (post-doc)
Ines Thiele	Systems Biomedicine	Bioinformatics		2009	Bernhard O. Palsson (grad student)
Pamela Reinagel	visual system, computation & theory