Andrew Robert Joyce

2007 Bioinformatics University of California, San Diego, La Jolla, CA 
"Andrew Joyce"


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Bernhard O. Palsson grad student 2007 UCSD
 (Modeling and analysis of the Escherichia coli transcriptional regulatory network: An assessment of its properties, plasticity, and role in adaptive evolution.)
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Murphy EF, Cotter PD, Hogan A, et al. (2013) Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity. Gut. 62: 220-6
Applebee MK, Joyce AR, Conrad TM, et al. (2011) Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli. The Journal of Biological Chemistry. 286: 23150-9
Conrad TM, Frazier M, Joyce AR, et al. (2010) RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proceedings of the National Academy of Sciences of the United States of America. 107: 20500-5
Conrad TM, Joyce AR, Applebee MK, et al. (2009) Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations. Genome Biology. 10: R118
Gianchandani EP, Joyce AR, Palsson BØ, et al. (2009) Functional states of the genome-scale Escherichia coli transcriptional regulatory system. Plos Computational Biology. 5: e1000403
Joyce AR, Palsson B. (2009) In Silico Genome-Scale Metabolic Models: The Constraint-Based Approach and Its Applications Systems Biology and Synthetic Biology. 193-233
Joyce AR, Palsson BØ. (2008) Predicting gene essentiality using genome-scale in silico models. Methods in Molecular Biology (Clifton, N.J.). 416: 433-57
Feist AM, Henry CS, Reed JL, et al. (2007) A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Molecular Systems Biology. 3: 121
Hua Q, Joyce AR, Palsson BØ, et al. (2007) Metabolic characterization of Escherichia coli strains adapted to growth on lactate. Applied and Environmental Microbiology. 73: 4639-47
Joyce AR, Palsson BO. (2007) Toward whole cell modeling and simulation: comprehensive functional genomics through the constraint-based approach. Progress in Drug Research. Fortschritte Der Arzneimittelforschung. ProgrèS Des Recherches Pharmaceutiques. 64: 265, 267-309
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