Ines Thiele, PhD

2004-2009 Bioinformatics University of California, San Diego, La Jolla, CA 
 2009-2013 University of Iceland, Reykjavík, Iceland 
 2013-2019 University of Luxembourg 
 2019- National University of Ireland, Galway, Galway, County Galway, Ireland 
Systems Biomedicine
"Ines Thiele"


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Bernhard O. Palsson grad student 2009 UCSD
 (A stoichiometric model of Escherichia coli's macromolecular synthesis machinery and its integration with metabolism.)


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Nikos Vlassis collaborator
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Baldini F, Hertel J, Sandt E, et al. (2020) Parkinson's disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions. Bmc Biology. 18: 62
Thiele I, Sahoo S, Heinken A, et al. (2020) Personalized whole-body models integrate metabolism, physiology, and the gut microbiome. Molecular Systems Biology. 16: e8982
Hertel J, Harms AC, Heinken A, et al. (2019) Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson's Disease. Cell Reports. 29: 1767-1777.e8
Poupin N, Tremblay-Franco M, Amiel A, et al. (2019) Arterio-venous metabolomics exploration reveals major changes across liver and intestine in the obese Yucatan minipig. Scientific Reports. 9: 12527
Ravcheev DA, Moussu L, Smajic S, et al. (2019) Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome. Frontiers in Genetics. 10: 636
Ben Guebila M, Thiele I. (2019) Predicting gastrointestinal drug effects using contextualized metabolic models. Plos Computational Biology. 15: e1007100
Heinken A, Ravcheev DA, Baldini F, et al. (2019) Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease. Microbiome. 7: 75
Greenhalgh K, Ramiro-Garcia J, Heinken A, et al. (2019) Integrated In Vitro and In Silico Modeling Delineates the Molecular Effects of a Synbiotic Regimen on Colorectal-Cancer-Derived Cells. Cell Reports. 27: 1621-1632.e9
Heirendt L, Arreckx S, Pfau T, et al. (2019) Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature Protocols
Baldini F, Heinken A, Heirendt L, et al. (2018) The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities. Bioinformatics (Oxford, England)
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