Jan Schellenberger

Affiliations: 
2010 Bioinformatics University of California, San Diego, La Jolla, CA 
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"Jan Schellenberger"

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Bernhard O. Palsson grad student 2010 UCSD
 (Monte Carlo simulation in systems biology.)
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Publications

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Bordbar A, Nagarajan H, Lewis NE, et al. (2014) Minimal metabolic pathway structure is consistent with associated biomolecular interactions. Molecular Systems Biology. 10: 737
Schellenberger J, Zielinski DC, Choi W, et al. (2012) Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling. Bmc Systems Biology. 6: 9
Schellenberger J, Que R, Fleming RM, et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nature Protocols. 6: 1290-307
Schellenberger J, Lewis NE, Palsson BØ. (2011) Elimination of thermodynamically infeasible loops in steady-state metabolic models. Biophysical Journal. 100: 544-53
Lewis NE, Schramm G, Bordbar A, et al. (2010) Large-scale in silico modeling of metabolic interactions between cell types in the human brain. Nature Biotechnology. 28: 1279-85
Bordbar A, Lewis NE, Schellenberger J, et al. (2010) Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Molecular Systems Biology. 6: 422
Thiele I, Fleming RM, Bordbar A, et al. (2010) Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery. Biophysical Journal. 98: 2072-81
Schellenberger J, Park JO, Conrad TM, et al. (2010) BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions. Bmc Bioinformatics. 11: 213
Feist AM, Zielinski DC, Orth JD, et al. (2010) Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli Metabolic Engineering. 12: 173-186
Schellenberger J, Palsson BØ. (2009) Use of randomized sampling for analysis of metabolic networks. The Journal of Biological Chemistry. 284: 5457-61
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