Vasiliy A. Portnoy

Affiliations: 
2010 Bioengineering University of California, San Diego, La Jolla, CA 
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"Vasiliy Portnoy"

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Bernhard O. Palsson grad student 2010 UCSD
 (Model-driven development and utilization of an oxygen-independent platform strain.)
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Publications

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Latif H, Sahin M, Tarasova J, et al. (2015) Adaptive Evolution of Thermotoga maritima Reveals Plasticity of the ABC Transporter Network. Applied and Environmental Microbiology. 81: 5477-85
Rodionov DA, Rodionova IA, Li X, et al. (2013) Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima. Frontiers in Microbiology. 4: 244
Latif H, Lerman JA, Portnoy VA, et al. (2013) The genome organization of Thermotoga maritima reflects its lifestyle. Plos Genetics. 9: e1003485
Lerman JA, Hyduke DR, Latif H, et al. (2012) In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications. 3: 929
Schellenberger J, Zielinski DC, Choi W, et al. (2012) Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling. Bmc Systems Biology. 6: 9
Portnoy VA, Bezdan D, Zengler K. (2011) Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering. Current Opinion in Biotechnology. 22: 590-4
Portnoy VA, Scott DA, Lewis NE, et al. (2010) Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655. Applied and Environmental Microbiology. 76: 6529-40
Portnoy VA, Herrgård MJ, Palsson BØ. (2008) Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain. Applied and Environmental Microbiology. 74: 7561-9
Shlomi T, Herrgard M, Portnoy V, et al. (2007) Systematic condition-dependent annotation of metabolic genes. Genome Research. 17: 1626-33
Herrgård MJ, Lee BS, Portnoy V, et al. (2006) Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. Genome Research. 16: 627-35
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