Jeffrey David Orth

2012 Bioengineering University of California, San Diego, La Jolla, CA 
"Jeffrey Orth"


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Bernhard O. Palsson grad student 2012 UCSD
 (Systems Biology Analysis of Escherichia coli for Discovery and Metabolic Engineering.)
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Monk JM, Charusanti P, Aziz RK, et al. (2013) Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proceedings of the National Academy of Sciences of the United States of America. 110: 20338-43
Lee SY, Sohn SB, Kim HU, et al. (2013) Genome-scale network modeling Systems Metabolic Engineering. 1-23
Lerman JA, Hyduke DR, Latif H, et al. (2012) In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications. 3: 929
Orth JD, Palsson B. (2012) Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions Bmc Systems Biology. 6
Orth JD, Conrad TM, Na J, et al. (2011) A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011. Molecular Systems Biology. 7: 535
Schellenberger J, Que R, Fleming RM, et al. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nature Protocols. 6: 1290-307
Orth JD, Fleming RM, Palsson BØ. (2010) Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide. Ecosal Plus. 4
Orth JD, Palsson B. (2010) Systematizing the generation of missing metabolic knowledge Biotechnology and Bioengineering. 107: 403-412
Orth JD, Thiele I, Palsson BO. (2010) What is flux balance analysis? Nature Biotechnology. 28: 245-248
Feist AM, Zielinski DC, Orth JD, et al. (2010) Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli Metabolic Engineering. 12: 173-186
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