Joshua Adam Lerman

2014 Bioinformatics University of California, San Diego, La Jolla, CA 
"Joshua Lerman"


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Bernhard O. Palsson grad student 2014 UCSD
 (Genome-scale Models of Metabolism and Gene Expression: Construction and Use for Growth Phenotype Prediction.)
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Ebrahim A, Brunk E, Tan J, et al. (2016) Multi-omic data integration enables discovery of hidden biological regularities. Nature Communications. 7: 13091
King ZA, Lu J, Dräger A, et al. (2015) BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Research
Ebrahim A, Almaas E, Bauer E, et al. (2015) Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831
Liu JK, O'Brien EJ, Lerman JA, et al. (2014) Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. Bmc Systems Biology. 8: 110
Federowicz S, Kim D, Ebrahim A, et al. (2014) Determining the control circuitry of redox metabolism at the genome-scale. Plos Genetics. 10: e1004264
Monk JM, Charusanti P, Aziz RK, et al. (2013) Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proceedings of the National Academy of Sciences of the United States of America. 110: 20338-43
O'Brien EJ, Lerman JA, Chang RL, et al. (2013) Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction. Molecular Systems Biology. 9: 693
Ebrahim A, Lerman JA, Palsson BO, et al. (2013) COBRApy: COnstraints-Based Reconstruction and Analysis for Python. Bmc Systems Biology. 7: 74
Latif H, Lerman JA, Portnoy VA, et al. (2013) The genome organization of Thermotoga maritima reflects its lifestyle. Plos Genetics. 9: e1003485
Fong NL, Lerman JA, Lam I, et al. (2013) Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant. Fems Microbiology Letters. 342: 62-9
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