Silpa Suthram, Ph.D.

Bioinformatics University of California, San Diego, La Jolla, CA 
computational biology
"Silpa Suthram"


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Trey Ideker grad student 2008 UCSD
 (Understanding cellular function through the analysis of protein interaction networks.)
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Brady JJ, Li M, Suthram S, et al. (2013) Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq. Nature Cell Biology. 15: 1244-52
Prasad C, Jiang L, Singh D, et al. (2013) Self-heat reliability considerations on Intel's 22nm Tri-Gate technology Ieee International Reliability Physics Symposium Proceedings. 5D.1.1-5D.1.5
Suthram S, Dudley JT, Chiang AP, et al. (2010) Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets. Plos Computational Biology. 6: e1000662
Fossum E, Friedel CC, Rajagopala SV, et al. (2009) Evolutionarily conserved herpesviral protein interaction networks. Plos Pathogens. 5: e1000570
Suthram S, Beyer A, Karp RM, et al. (2008) eQED: an efficient method for interpreting eQTL associations using protein networks. Molecular Systems Biology. 4: 162
Beyer A, Suthram S, Ideker T. (2007) Uncovering regulatory pathways with expression quantitative trait loci Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics
Suthram S, Shlomi T, Ruppin E, et al. (2007) Comparison of protein-protein interaction confidence assignment schemes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4023: 39-50
Suthram S, Shlomi T, Ruppin E, et al. (2006) A direct comparison of protein interaction confidence assignment schemes. Bmc Bioinformatics. 7: 360
Suthram S, Sittler T, Ideker T. (2005) The Plasmodium protein network diverges from those of other eukaryotes. Nature. 438: 108-12
Sharan R, Suthram S, Kelley RM, et al. (2005) Conserved patterns of protein interaction in multiple species. Proceedings of the National Academy of Sciences of the United States of America. 102: 1974-9
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