Ronald Jansen, Ph.D.

Yale University, New Haven, CT 
Computational Biology and Bioinformatics
"Ronald Jansen"


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Mark B. Gerstein grad student 2002 Yale
 (Computational proteomics: Integrating expression data with genome -wide information.)
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Vaez A, Jansen R, Prins BP, et al. (2015) In Silico Post Genome-Wide Association Studies Analysis of C-Reactive Protein Loci Suggests an Important Role for Interferons. Circulation. Cardiovascular Genetics. 8: 487-97
Zhang J, Ruhlman TA, Mower JP, et al. (2013) Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing. Bmc Plant Biology. 13: 228
Yu H, Jansen R, Stolovitzky G, et al. (2007) Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinformatics (Oxford, England). 23: 2163-73
Edwards AM, Kus B, Jansen R, et al. (2004) Bridging structural biology and genomics: assessing protein interaction data with known complexes. Drug Discovery Today. 9: S32-40
Lin N, Wu B, Jansen R, et al. (2004) Information assessment on predicting protein-protein interactions. Bmc Bioinformatics. 5: 154
Jansen R, Gerstein M. (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Current Opinion in Microbiology. 7: 535-45
Xia Y, Yu H, Jansen R, et al. (2004) Analyzing cellular biochemistry in terms of molecular networks. Annual Review of Biochemistry. 73: 1051-87
Krebs WG, Tsai J, Alexandrov V, et al. (2003) Tools and databases to analyze protein flexibility; approaches to mapping implied features onto sequences. Methods in Enzymology. 374: 544-84
Jansen R, Yu H, Greenbaum D, et al. (2003) A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science (New York, N.Y.). 302: 449-53
Jansen R, Bussemaker HJ, Gerstein M. (2003) Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Research. 31: 2242-51
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