Thomas E. Royce, Ph.D.

Affiliations: 
Yale University, New Haven, CT 
Area:
Computational Biology and Bioinformatics
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"Thomas Royce"

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Mark B. Gerstein grad student 2007 Yale
 (Tiling microarray informatics.)
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Publications

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Norman PJ, Norberg SJ, Nemat-Gorgani N, et al. (2015) Very long haplotype tracts characterized at high resolution from HLA homozygous cell lines Immunogenetics. 67: 479-485
Amini S, Pushkarev D, Christiansen L, et al. (2014) Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing. Nature Genetics. 46: 1343-9
Ivakhno S, Royce T, Cox AJ, et al. (2010) CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinformatics (Oxford, England). 26: 3051-8
Pleasance ED, Cheetham RK, Stephens PJ, et al. (2010) A comprehensive catalogue of somatic mutations from a human cancer genome. Nature. 463: 191-6
April C, Klotzle B, Royce T, et al. (2009) Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples. Plos One. 4: e8162
Seringhaus M, Rozowsky J, Royce T, et al. (2008) Mismatch oligonucleotides in human and yeast: Guidelines for probe design on tiling microarrays Bmc Genomics. 9
Setlur SR, Royce TE, Sboner A, et al. (2007) Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer. Cancer Research. 67: 10296-303
Royce TE, Rozowsky JS, Gerstein MB. (2007) Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification. Nucleic Acids Research. 35: e99
Royce TE, Carriero NJ, Gerstein MB. (2007) An efficient pseudomedian filter for tiling microrrays. Bmc Bioinformatics. 8: 186
Korbel JO, Urban AE, Grubert F, et al. (2007) Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 10110-5
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